Pex5 (peroxisomal biogenesis factor 5) - Rat Genome Database

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Gene: Pex5 (peroxisomal biogenesis factor 5) Chinchilla lanigera
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Symbol: Pex5
Name: peroxisomal biogenesis factor 5
RGD ID: 8815742
Description: ENCODES a protein that exhibits enzyme binding (ortholog); peroxisome matrix targeting signal-1 binding (ortholog); peroxisome membrane targeting sequence binding (ortholog); INVOLVED IN cell development (ortholog); cellular response to reactive oxygen species (ortholog); cerebral cortex cell migration (ortholog); ASSOCIATED WITH Cerebrohepatorenal Syndrome, Variant Types (ortholog); developmental and epileptic encephalopathy 21 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554134,736,189 - 4,755,766 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554134,736,189 - 4,755,559 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pex5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554134,736,189 - 4,755,766 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554134,736,189 - 4,755,559 (+)NCBIChiLan1.0ChiLan1.0
PEX5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38127,188,653 - 7,218,574 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl127,188,685 - 7,218,574 (+)EnsemblGRCh38hg38GRCh38
GRCh37127,341,249 - 7,371,170 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36127,234,225 - 7,255,343 (+)NCBINCBI36Build 36hg18NCBI36
Build 34127,234,223 - 7,255,342NCBI
Celera128,917,914 - 8,946,785 (+)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef127,154,705 - 7,183,873 (+)NCBIHuRef
CHM1_1127,340,679 - 7,369,353 (+)NCBICHM1_1
T2T-CHM13v2.0127,201,809 - 7,231,939 (+)NCBIT2T-CHM13v2.0
Pex5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396124,373,774 - 124,392,878 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6124,373,775 - 124,392,026 (-)EnsemblGRCm39 Ensembl
GRCm386124,396,816 - 124,415,944 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6124,396,816 - 124,415,067 (-)EnsemblGRCm38mm10GRCm38
MGSCv376124,346,834 - 124,365,085 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366124,362,437 - 124,380,668 (-)NCBIMGSCv36mm8
Celera6126,087,349 - 126,105,596 (-)NCBICelera
Cytogenetic Map6F2NCBI
cM Map659.15NCBI
Pex5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84158,956,973 - 158,983,581 (-)NCBIGRCr8
mRatBN7.24157,270,671 - 157,296,432 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4157,270,672 - 157,296,431 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4163,487,111 - 163,512,826 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04159,270,018 - 159,295,731 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04157,915,420 - 157,941,178 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04156,983,914 - 157,009,675 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4156,403,016 - 156,427,755 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl4156,983,915 - 157,009,674 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04224,003,341 - 224,029,474 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.04223,418,715 - 223,444,193 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44160,567,258 - 160,595,985 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14160,813,343 - 160,858,163 (-)NCBI
Celera4146,011,937 - 146,037,676 (-)NCBICelera
Cytogenetic Map4q42NCBI
PEX5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21012,753,209 - 12,775,098 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11212,750,866 - 12,771,857 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0127,318,637 - 7,340,428 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1127,235,049 - 7,255,815 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl127,235,049 - 7,255,815 (+)Ensemblpanpan1.1panPan2
PEX5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12737,843,218 - 37,860,664 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2737,809,717 - 37,860,376 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha278,756,138 - 8,773,549 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02738,196,735 - 38,214,157 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2738,196,420 - 38,214,129 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12738,070,618 - 38,088,021 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02738,111,918 - 38,129,293 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0278,233,881 - 8,251,302 (+)NCBIUU_Cfam_GSD_1.0
Pex5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945101,919,747 - 101,938,591 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936709587,295 - 606,247 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936709587,296 - 606,085 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PEX5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl563,542,431 - 63,562,849 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1563,542,422 - 63,562,762 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2565,936,442 - 65,956,834 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PEX5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,255,078 - 7,286,500 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl117,256,182 - 7,274,938 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666063923,792 - 955,255 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pex5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248603,771,963 - 3,790,985 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248603,771,949 - 3,790,982 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000021967   ⟹   ENSCLAP00000021764
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554134,736,189 - 4,755,766 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000021968   ⟹   ENSCLAP00000021765
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554134,737,270 - 4,755,559 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000021969   ⟹   ENSCLAP00000021766
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554134,737,690 - 4,755,766 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000021970   ⟹   ENSCLAP00000021767
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554134,737,690 - 4,755,766 (+)Ensembl
RefSeq Acc Id: XM_013511628   ⟹   XP_013367082
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554134,737,041 - 4,755,559 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013511629   ⟹   XP_013367083
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554134,737,452 - 4,755,559 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013511630   ⟹   XP_013367084
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554134,737,452 - 4,755,559 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013511631   ⟹   XP_013367085
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554134,736,189 - 4,755,559 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013511632   ⟹   XP_013367086
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554134,737,039 - 4,755,559 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013511633   ⟹   XP_013367087
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554134,737,041 - 4,755,559 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013511634   ⟹   XP_013367088
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554134,737,270 - 4,755,559 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013367085   ⟸   XM_013511631
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W1A3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013367086   ⟸   XM_013511632
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013367082   ⟸   XM_013511628
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W1A3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013367087   ⟸   XM_013511633
- Peptide Label: isoform X3
- UniProtKB: A0A8C2W3S7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013367088   ⟸   XM_013511634
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VYY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013367084   ⟸   XM_013511630
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W1A3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013367083   ⟸   XM_013511629
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W1A3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000021767   ⟸   ENSCLAT00000021970
Ensembl Acc Id: ENSCLAP00000021764   ⟸   ENSCLAT00000021967
Ensembl Acc Id: ENSCLAP00000021766   ⟸   ENSCLAT00000021969
Ensembl Acc Id: ENSCLAP00000021765   ⟸   ENSCLAT00000021968


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014902 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000021967 ENTREZGENE
  ENSCLAT00000021967.1 UniProtKB/TrEMBL
  ENSCLAT00000021968 ENTREZGENE
  ENSCLAT00000021968.1 UniProtKB/TrEMBL
  ENSCLAT00000021969 ENTREZGENE
  ENSCLAT00000021969.1 UniProtKB/TrEMBL
  ENSCLAT00000021970 ENTREZGENE
  ENSCLAT00000021970.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro PEX5/PEX5L UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
NCBI Gene Pex5 ENTREZGENE
PANTHER PTHR10130 UniProtKB/TrEMBL
  PTHR10130:SF2 UniProtKB/TrEMBL
Pfam TPR_16 UniProtKB/TrEMBL
  TPR_8 UniProtKB/TrEMBL
PROSITE TPR UniProtKB/TrEMBL
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A8C2VYY8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2W1A3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2W3S7 ENTREZGENE, UniProtKB/TrEMBL