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Gene: Lmo1 (LIM domain only 1) Chinchilla lanigera

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Symbol:

Lmo1

Name:

LIM domain only 1

RGD ID:

8809338

Description:

INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); regulation of T cell homeostatic proliferation (ortholog); ASSOCIATED WITH neuroblastoma (ortholog); T-cell acute lymphoblastic leukemia (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LIM domain only 1 (rhombotin 1); rhombotin-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LMO1 (LIM domain only 1)	NCBI	Ortholog
Mus musculus (house mouse):	Lmo1 (LIM domain only 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Lmo1 (LIM domain only 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LMO1 (LIM domain only 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LMO1 (LIM domain only 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lmo1 (LIM domain only 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LMO1 (LIM domain only 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LMO1 (LIM domain only 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lmo1 (LIM domain only 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955414	24,021,218 - 24,061,183 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955414	24,021,275 - 24,072,098 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lmo1	Chinchilla	neuroblastoma		ISO	LMO1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neuroblastoma more ...	ClinVar	PMID:21124317 and PMID:26560027

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lmo1	Chinchilla	T-cell acute lymphoblastic leukemia		ISO	LMO1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:19246562 more ...

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lmo1	Chinchilla	negative regulation of transcription by RNA polymerase II	involved_in	ISO	LMO1 (Sus scrofa)	9068941	PMID:19228115	AgBase	PMID:19228115
Lmo1	Chinchilla	negative regulation of transcription by RNA polymerase II	acts_upstream_of_or_within	ISO	MGI:98480 and MGI:98510	9068941	PMID:10373552	MGI	PMID:10373552
Lmo1	Chinchilla	positive regulation of transcription by RNA polymerase II	involved_in	ISO	LMO1 (Homo sapiens)	9068941	PMID:20855495	BHF-UCL	PMID:20855495
Lmo1	Chinchilla	positive regulation of transcription by RNA polymerase II	acts_upstream_of_or_within	ISO	MGI:95663 and MGI:98480	9068941	PMID:9819382	MGI	PMID:9819382
Lmo1	Chinchilla	regulation of T cell homeostatic proliferation	acts_upstream_of_or_within	ISO	Lmo1 (Mus musculus)	9068941	PMID:1508213	MGI	PMID:1508213

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lmo1	Chinchilla	nucleolus	NOT\|located_in	ISO	Lmo1 (Mus musculus)	9068941	PMID:1703797	UniProt	PMID:1703797
Lmo1	Chinchilla	nucleus	located_in	ISO	Lmo1 (Mus musculus)	9068941	PMID:1703797	UniProt	PMID:1703797

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lmo1	Chinchilla	protein binding	enables	ISO	PR:P22091	9068941	PMID:19323994	MGI	PMID:19323994
Lmo1	Chinchilla	protein binding	enables	ISO	UniProtKB:O43298 and UniProtKB:Q86U70	9068941	PMID:33961781	IntAct	PMID:33961781
Lmo1	Chinchilla	protein binding	enables	ISO	UniProtKB:Q06547	9068941	PMID:21516116	IntAct	PMID:21516116
Lmo1	Chinchilla	protein binding	enables	ISO	UniProtKB:A6NC98 more ...	9068941	PMID:32296183	IntAct	PMID:32296183
Lmo1	Chinchilla	protein binding	enables	ISO	UniProtKB:O43298 more ...	9068941	PMID:31515488	IntAct	PMID:31515488
Lmo1	Chinchilla	protein binding	enables	ISO	UniProtKB:O14627 more ...	9068941	PMID:25416956	IntAct	PMID:25416956
Lmo1	Chinchilla	protein binding	enables	ISO	UniProtKB:Q9UJ70-2	9068941	PMID:27107012	IntAct	PMID:27107012

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

PMID:30032202

Lmo1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955414	24,021,218 - 24,061,183 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955414	24,021,275 - 24,072,098 (-)	NCBI	ChiLan1.0	ChiLan1.0

LMO1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	8,224,309 - 8,268,787 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	8,224,309 - 8,268,716 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	8,245,856 - 8,290,334 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	8,202,433 - 8,241,982 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	8,202,432 - 8,241,982	NCBI
Celera	11	8,363,953 - 8,403,488 (-)	NCBI		Celera
Cytogenetic Map	11	p15.4	NCBI
HuRef	11	7,913,914 - 7,958,156 (-)	NCBI		HuRef
CHM1_1	11	8,244,701 - 8,288,993 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	8,305,646 - 8,350,087 (-)	NCBI		T2T-CHM13v2.0

Lmo1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	108,737,776 - 108,774,356 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	108,737,779 - 108,774,414 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	109,138,565 - 109,175,207 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	109,138,572 - 109,175,207 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	116,282,086 - 116,313,822 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	108,929,748 - 108,961,690 (-)	NCBI		MGSCv36	mm8
Celera	7	109,115,069 - 109,146,750 (-)	NCBI		Celera
Cytogenetic Map	7	E3	NCBI
cM Map	7	57.21	NCBI

Lmo1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	172,567,156 - 172,603,282 (-)	NCBI		GRCr8
mRatBN7.2	1	163,132,338 - 163,168,521 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	163,132,339 - 163,168,522 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	171,473,978 - 171,509,933 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	178,660,040 - 178,695,995 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	171,332,980 - 171,368,943 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	173,728,183 - 173,764,288 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	173,728,184 - 173,764,250 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	180,718,642 - 180,753,931 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	166,706,025 - 166,741,550 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	166,817,032 - 166,852,213 (-)	NCBI
Celera	1	161,038,350 - 161,074,053 (-)	NCBI		Celera
Cytogenetic Map	1	q33	NCBI

LMO1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	10,648,739 - 10,693,150 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	10,610,883 - 10,655,271 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	8,342,318 - 8,386,659 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	8,088,223 - 8,127,704 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	8,088,223 - 8,132,215 (-)	Ensembl	panpan1.1		panPan2

LMO1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	31,727,723 - 31,780,179 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	31,727,242 - 31,763,645 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	31,296,487 - 31,348,744 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	32,601,145 - 32,653,395 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	32,601,145 - 32,641,571 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	31,870,976 - 31,923,201 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	32,036,918 - 32,089,231 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	32,330,836 - 32,383,167 (-)	NCBI		UU_Cfam_GSD_1.0

Lmo1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	53,626,372 - 53,713,474 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936528	9,707,677 - 9,747,468 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936528	9,707,683 - 9,747,449 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LMO1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	1,076,938 - 1,082,974 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	1,045,138 - 1,082,974 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	1,248,307 - 1,282,660 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LMO1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	56,533,530 - 56,578,167 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	56,571,860 - 56,577,855 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	154,259,090 - 154,304,334 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lmo1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624766	392,953 - 431,015 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624766	393,017 - 431,118 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005380218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005380219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005380220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013511707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013511708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01015532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01015533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDI01322766	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000024555 ⟹ ENSCLAP00000024320

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955414	24,021,218 - 24,057,352 (-)	Ensembl

Ensembl Acc Id:

ENSCLAT00000024556 ⟹ ENSCLAP00000024321

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955414	24,021,581 - 24,061,183 (-)	Ensembl

RefSeq Acc Id:

XM_005380218 ⟹ XP_005380275

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955414	24,021,275 - 24,061,222 (-)	NCBI

Sequence:

show sequence

GCGTCCTCTGCCGGGGCCTGGCTGGAGCCGCCGGGCAGCATGGTGTTGCACCGGGAGGACGTTCGTAGTTCCTTGCAATTCTGAGGCACAAAAGTAGGTGAGACTGCTTTTGTATCTGCGAAGTGCTT
CACTCCTGAATGTAATTCTAGCTGAGTGCAATCTAGGTTAAGAGCCGGACAAGCGGGTAATTAGAGCCCGCTCGCTGCCTGCCCGAGGACCGACCGCCCCGCCAAGCGCGCCCGAGTCGGCGCCCTTC
TCCCGGCCGAGCCGAGCTGCGGTTGGACACGGAGCGCCCGAGATGATGGTGCTGGACAAGGAGGACGGTGTGCCGATGCTCTCCGTCCAACCCAAAGGGAAGCAGAAGGGCTGTGCAGGCTGTAACCG
CAAGATCAAGGACCGCTACCTGCTGAAGGCGCTGGACAAGTACTGGCACGAGGACTGCCTCAAGTGTGCCTGCTGTGACTGCCGCCTGGGCGAGGTGGGCTCCACCCTCTACACCAAGGCCAACCTCA
TCCTGTGCCGGCGTGACTACCTGAGGCTCTTTGGCACCACAGGGAACTGTGCCGCCTGCAGCAAACTGATCCCAGCTTTCGAGATGGTGATGCGGGCCCGGGACAACGTGTATCACCTCGACTGCTTC
GCCTGCCAGCTGTGTAACCAGAGATTTTGTGTGGGGGACAAATTCTTCCTGAAGAACAACATGATCTTGTGTCAGATGGACTATGAGGAGGGCCAGCTCAACGGCACCTTTGAATCCCAGGTTCAGTA
ACACCCGGCGCCCGGCCTCCAGGCCCGTCCAGCCTTCTGCCCGCCTGCCCACCCTCCTGGCAGACCAGCCAGCCACCTGCCGCCATGGGCTGGCCAGCTGCTGTCCTGCCGAATCAGAACTTCTCCGT
CTTGGATGGGAGGGTAACCCTTCCTCTGCCGCCGCCGCCCCTCTGTGTGTGACCCCTCCTGGGGCCGGGCTGGGCCTGTACAGTCTGTCTTCTGTATATAAATGGGAACATTTATTTTATGAGAAATG
TAATGCGATTTTATTACTGGCGTGGATTAAACTTATGAATGTTTCCGCGGA

hide sequence

RefSeq Acc Id:

XM_005380219 ⟹ XP_005380276

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955414	24,021,275 - 24,072,098 (-)	NCBI

Sequence:

show sequence

CCCAGCCAGTCGGAGTCCATGAAGCTCGCAGACCAGGACCAGCCTGAGGAGCACTTGGCAACAT
CTGGCCTGTGAGACCCAGCCCAGGATTGCTTGGGGTCTCCAGTCCTCAGTGGACAGTTCGTAGTTCCTTGCAATTCTGAGGCACAAAAGTAGGTGAGACTGCTTTTGTATCTGCGAAGTGCTTCACTC
CTGAATGTAATTCTAGCTGAGTGCAATCTAGGTTAAGAGCCGGACAAGCGGGTAATTAGAGCCCGCTCGCTGCCTGCCCGAGGACCGACCGCCCCGCCAAGCGCGCCCGAGTCGGCGCCCTTCTCCCG
GCCGAGCCGAGCTGCGGTTGGACACGGAGCGCCCGAGATGATGGTGCTGGACAAGGAGGACGGTGTGCCGATGCTCTCCGTCCAACCCAAAGGGAAGCAGAAGGGCTGTGCAGGCTGTAACCGCAAGA
TCAAGGACCGCTACCTGCTGAAGGCGCTGGACAAGTACTGGCACGAGGACTGCCTCAAGTGTGCCTGCTGTGACTGCCGCCTGGGCGAGGTGGGCTCCACCCTCTACACCAAGGCCAACCTCATCCTG
TGCCGGCGTGACTACCTGAGGCTCTTTGGCACCACAGGGAACTGTGCCGCCTGCAGCAAACTGATCCCAGCTTTCGAGATGGTGATGCGGGCCCGGGACAACGTGTATCACCTCGACTGCTTCGCCTG
CCAGCTGTGTAACCAGAGATTTTGTGTGGGGGACAAATTCTTCCTGAAGAACAACATGATCTTGTGTCAGATGGACTATGAGGAGGGCCAGCTCAACGGCACCTTTGAATCCCAGGTTCAGTAACACC
CGGCGCCCGGCCTCCAGGCCCGTCCAGCCTTCTGCCCGCCTGCCCACCCTCCTGGCAGACCAGCCAGCCACCTGCCGCCATGGGCTGGCCAGCTGCTGTCCTGCCGAATCAGAACTTCTCCGTCTTGG
ATGGGAGGGTAACCCTTCCTCTGCCGCCGCCGCCCCTCTGTGTGTGACCCCTCCTGGGGCCGGGCTGGGCCTGTACAGTCTGTCTTCTGTATATAAATGGGAACATTTATTTTATGAGAAATGTAATG
CGATTTTATTACTGGCGTGGATTAAACTTATGAATGTTTCCGCGGA

hide sequence

RefSeq Acc Id:

XM_005380220 ⟹ XP_005380277

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955414	24,021,275 - 24,072,098 (-)	NCBI

Sequence:

show sequence

CCCAGCCAGTCGGAGTCCATGAAGCTCGCAGACCAGGACCAGCCTGAGGAGCACTTGGCAACAT
CTGGCCTGTGAGACCCAGCCCAGGATTGCTTGGGGTCTCCAGTCCTCAGTGGACAGGTGTGCCGATGCTCTCCGTCCAACCCAAAGGGAAGCAGAAGGGCTGTGCAGGCTGTAACCGCAAGATCAAGG
ACCGCTACCTGCTGAAGGCGCTGGACAAGTACTGGCACGAGGACTGCCTCAAGTGTGCCTGCTGTGACTGCCGCCTGGGCGAGGTGGGCTCCACCCTCTACACCAAGGCCAACCTCATCCTGTGCCGG
CGTGACTACCTGAGGCTCTTTGGCACCACAGGGAACTGTGCCGCCTGCAGCAAACTGATCCCAGCTTTCGAGATGGTGATGCGGGCCCGGGACAACGTGTATCACCTCGACTGCTTCGCCTGCCAGCT
GTGTAACCAGAGATTTTGTGTGGGGGACAAATTCTTCCTGAAGAACAACATGATCTTGTGTCAGATGGACTATGAGGAGGGCCAGCTCAACGGCACCTTTGAATCCCAGGTTCAGTAACACCCGGCGC
CCGGCCTCCAGGCCCGTCCAGCCTTCTGCCCGCCTGCCCACCCTCCTGGCAGACCAGCCAGCCACCTGCCGCCATGGGCTGGCCAGCTGCTGTCCTGCCGAATCAGAACTTCTCCGTCTTGGATGGGA
GGGTAACCCTTCCTCTGCCGCCGCCGCCCCTCTGTGTGTGACCCCTCCTGGGGCCGGGCTGGGCCTGTACAGTCTGTCTTCTGTATATAAATGGGAACATTTATTTTATGAGAAATGTAATGCGATTT
TATTACTGGCGTGGATTAAACTTATGAATGTTTCCGCGGA

hide sequence

RefSeq Acc Id:

XM_013511707 ⟹ XP_013367161

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955414	24,021,275 - 24,057,131 (-)	NCBI

Sequence:

show sequence

AGCAGGAGTGCAAACCTCATACATTGAGGGAGAAAGGCAGCGGGAGGCGGCCGCCGAGATTCCC
CCATCTCTTTGAATATAATTTTAGATTGAGATTCAGATTAAATCCGAGGGGAAAACACTTTATGAGGCTGAAAGCTGTGTCGTTGCCAGAGCCAGGGTTATGAGCTATCAAATGCAATTACATTAAGA
CAGATTATACTGGGCAAATTGAGCCATTTAGAAGGTGAGAATCAAAGAAACGGCTCTGATCCTCTCTTCCCTCTTGTCTCTCCCTCTCTCTCTCCCTCTCTCTCTCTAAATTGCAGTTCGTAGTTCCT
TGCAATTCTGAGGCACAAAAGTAGGTGAGACTGCTTTTGTATCTGCGAAGTGCTTCACTCCTGAATGTAATTCTAGCTGAGTGCAATCTAGGTTAAGAGCCGGACAAGCGGGTAATTAGAGCCCGCTC
GCTGCCTGCCCGAGGACCGACCGCCCCGCCAAGCGCGCCCGAGTCGGCGCCCTTCTCCCGGCCGAGCCGAGCTGCGGTTGGACACGGAGCGCCCGAGATGATGGTGCTGGACAAGGAGGACGGTGTGC
CGATGCTCTCCGTCCAACCCAAAGGGAAGCAGAAGGGCTGTGCAGGCTGTAACCGCAAGATCAAGGACCGCTACCTGCTGAAGGCGCTGGACAAGTACTGGCACGAGGACTGCCTCAAGTGTGCCTGC
TGTGACTGCCGCCTGGGCGAGGTGGGCTCCACCCTCTACACCAAGGCCAACCTCATCCTGTGCCGGCGTGACTACCTGAGGCTCTTTGGCACCACAGGGAACTGTGCCGCCTGCAGCAAACTGATCCC
AGCTTTCGAGATGGTGATGCGGGCCCGGGACAACGTGTATCACCTCGACTGCTTCGCCTGCCAGCTGTGTAACCAGAGATTTTGTGTGGGGGACAAATTCTTCCTGAAGAACAACATGATCTTGTGTC
AGATGGACTATGAGGAGGGCCAGCTCAACGGCACCTTTGAATCCCAGGTTCAGTAACACCCGGCGCCCGGCCTCCAGGCCCGTCCAGCCTTCTGCCCGCCTGCCCACCCTCCTGGCAGACCAGCCAGC
CACCTGCCGCCATGGGCTGGCCAGCTGCTGTCCTGCCGAATCAGAACTTCTCCGTCTTGGATGGGAGGGTAACCCTTCCTCTGCCGCCGCCGCCCCTCTGTGTGTGACCCCTCCTGGGGCCGGGCTGG
GCCTGTACAGTCTGTCTTCTGTATATAAATGGGAACATTTATTTTATGAGAAATGTAATGCGATTTTATTACTGGCGTGGATTAAACTTATGAATGTTTCCGCGGA

hide sequence

RefSeq Acc Id:

XM_013511708 ⟹ XP_013367162

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955414	24,021,275 - 24,070,098 (-)	NCBI

Sequence:

show sequence

GGAAGATTCTGCGTCAAAAAGCAGGTGTGCCGATGCTCTCCGTCCAACCCAAAGGGAAGCAGAAGGGCTGTGCAGGCTGTAACCGCAAGATCAAGGACCGCTACCTGCTGAAGGCGCTGGACAAGTAC
TGGCACGAGGACTGCCTCAAGTGTGCCTGCTGTGACTGCCGCCTGGGCGAGGTGGGCTCCACCCTCTACACCAAGGCCAACCTCATCCTGTGCCGGCGTGACTACCTGAGGCTCTTTGGCACCACAGG
GAACTGTGCCGCCTGCAGCAAACTGATCCCAGCTTTCGAGATGGTGATGCGGGCCCGGGACAACGTGTATCACCTCGACTGCTTCGCCTGCCAGCTGTGTAACCAGAGATTTTGTGTGGGGGACAAAT
TCTTCCTGAAGAACAACATGATCTTGTGTCAGATGGACTATGAGGAGGGCCAGCTCAACGGCACCTTTGAATCCCAGGTTCAGTAACACCCGGCGCCCGGCCTCCAGGCCCGTCCAGCCTTCTGCCCG
CCTGCCCACCCTCCTGGCAGACCAGCCAGCCACCTGCCGCCATGGGCTGGCCAGCTGCTGTCCTGCCGAATCAGAACTTCTCCGTCTTGGATGGGAGGGTAACCCTTCCTCTGCCGCCGCCGCCCCTC
TGTGTGTGACCCCTCCTGGGGCCGGGCTGGGCCTGTACAGTCTGTCTTCTGTATATAAATGGGAACATTTATTTTATGAGAAATGTAATGCGATTTTATTACTGGCGTGGATTAAACTTATGAATGTT
TCCGCGGA

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Protein RefSeqs	XP_005380275	(Get FASTA)	NCBI Sequence Viewer
	XP_005380276	(Get FASTA)	NCBI Sequence Viewer
	XP_005380277	(Get FASTA)	NCBI Sequence Viewer
	XP_013367161	(Get FASTA)	NCBI Sequence Viewer
	XP_013367162	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000024320
	ENSCLAP00000024320.1
	ENSCLAP00000024321
	ENSCLAP00000024321.1

RefSeq Acc Id:	XP_005380277 ⟸ XM_005380220
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2W2R6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQ MDYEEGQLNGTFESQVQ hide sequence

RefSeq Acc Id:	XP_005380276 ⟸ XM_005380219
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2YUI5 (UniProtKB/TrEMBL), A0A8C2W2R6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGST LYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ hide sequence

RefSeq Acc Id:	XP_005380275 ⟸ XM_005380218
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2YUI5 (UniProtKB/TrEMBL), A0A8C2W2R6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDK FFLKNNMILCQMDYEEGQLNGTFESQVQ hide sequence

RefSeq Acc Id:	XP_013367162 ⟸ XM_013511708
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2W2R6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCR RDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ hide sequence

RefSeq Acc Id:	XP_013367161 ⟸ XM_013511707
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2YUI5 (UniProtKB/TrEMBL), A0A8C2W2R6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDK FFLKNNMILCQMDYEEGQLNGTFESQVQ hide sequence

Protein Domains

LIM zinc-binding

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000016697	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000024555	ENTREZGENE
	ENSCLAT00000024555.1	UniProtKB/TrEMBL
	ENSCLAT00000024556	ENTREZGENE
	ENSCLAT00000024556.1	UniProtKB/TrEMBL
Gene3D-CATH	Cysteine Rich Protein	UniProtKB/TrEMBL
InterPro	LMO_RBTN_TF	UniProtKB/TrEMBL
	Znf_LIM	UniProtKB/TrEMBL
NCBI Gene	Lmo1	ENTREZGENE
PANTHER	LD11652P	UniProtKB/TrEMBL
	RHOMBOTIN-1	UniProtKB/TrEMBL
Pfam	LIM	UniProtKB/TrEMBL
PROSITE	LIM_DOMAIN_1	UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/TrEMBL
SMART	LIM	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
UniProt	A0A8C2W2R6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2YUI5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-16	Lmo1	LIM domain only 1		LIM domain only 1 (rhombotin 1)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD