Zcchc3 (zinc finger CCHC-type containing 3) - Rat Genome Database

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Gene: Zcchc3 (zinc finger CCHC-type containing 3) Chinchilla lanigera
Analyze
Symbol: Zcchc3
Name: zinc finger CCHC-type containing 3
RGD ID: 8803091
Description: ENCODES a protein that exhibits double-stranded DNA binding (ortholog); INVOLVED IN activation of innate immune response (ortholog); cellular response to exogenous dsRNA (ortholog); defense response to virus (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger CCHC domain-containing protein 3; zinc finger, CCHC domain containing 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955597195,002 - 196,231 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955597194,912 - 197,697 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Zcchc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955597195,002 - 196,231 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955597194,912 - 197,697 (+)NCBIChiLan1.0ChiLan1.0
ZCCHC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3820297,570 - 300,321 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl20297,570 - 300,321 (+)EnsemblGRCh38hg38GRCh38
GRCh3720278,211 - 280,965 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3620226,204 - 228,965 (+)NCBINCBI36Build 36hg18NCBI36
Build 3420226,203 - 228,961NCBI
Celera20373,047 - 375,805 (+)NCBICelera
Cytogenetic Map20p13NCBI
HuRef20229,449 - 232,207 (+)NCBIHuRef
CHM1_120278,201 - 280,959 (+)NCBICHM1_1
T2T-CHM13v2.020340,752 - 343,503 (+)NCBIT2T-CHM13v2.0
Zcchc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392152,253,875 - 152,256,711 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2152,253,875 - 152,256,947 (-)EnsemblGRCm39 Ensembl
GRCm382152,411,956 - 152,415,044 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2152,411,955 - 152,415,027 (-)EnsemblGRCm38mm10GRCm38
MGSCv372152,237,692 - 152,240,780 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362152,104,396 - 152,106,468 (-)NCBIMGSCv36mm8
Celera2158,224,872 - 158,227,955 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map274.98NCBI
Zcchc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83161,332,760 - 161,335,591 (-)NCBIGRCr8
mRatBN7.23140,872,460 - 140,875,292 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3140,872,460 - 140,882,408 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3144,777,641 - 144,780,474 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03153,361,487 - 153,364,319 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03151,101,349 - 151,104,179 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03147,877,321 - 147,881,434 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,878,936 - 147,880,138 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03154,225,218 - 154,228,259 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43142,727,648 - 142,730,465 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3139,624,087 - 139,628,200 (-)NCBICelera
Cytogenetic Map3q41NCBI
ZCCHC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2211,376,883 - 1,388,569 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1201,381,953 - 1,385,396 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v020504,967 - 508,354 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.120274,522 - 277,493 (+)NCBIpanpan1.1PanPan1.1panPan2
ZCCHC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12420,537,849 - 20,540,098 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2420,190,822 - 20,193,772 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02421,231,074 - 21,234,025 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2421,232,594 - 21,234,183 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12420,506,754 - 20,509,706 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02420,612,306 - 20,615,248 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02421,043,099 - 21,046,051 (-)NCBIUU_Cfam_GSD_1.0
Zcchc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494472,532,832 - 72,547,892 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366703,048,914 - 3,049,809 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZCCHC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1734,882,816 - 34,885,505 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11734,882,812 - 34,885,632 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21739,662,491 - 39,665,335 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZCCHC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1235,422,903 - 35,426,145 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl235,423,430 - 35,424,638 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660787,594,906 - 7,598,250 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zcchc3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247411,399,481 - 1,400,701 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247411,399,405 - 1,400,980 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000000331   ⟹   ENSCLAP00000000303
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955597195,002 - 196,231 (+)Ensembl
RefSeq Acc Id: XM_005414712   ⟹   XP_005414769
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955597194,912 - 197,697 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005414769 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000000303.1
RefSeq Acc Id: XP_005414769   ⟸   XM_005414712
- UniProtKB: A0A8C2UIR3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000000303   ⟸   ENSCLAT00000000331
Protein Domains
CCHC-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000269 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000000331.1 UniProtKB/TrEMBL
Gene3D-CATH Zinc finger, CCHC-type UniProtKB/TrEMBL
InterPro ZCCHC3 UniProtKB/TrEMBL
  Znf_CCHC UniProtKB/TrEMBL
  Znf_CCHC_sf UniProtKB/TrEMBL
NCBI Gene Zcchc3 ENTREZGENE
PANTHER PTHR22639 UniProtKB/TrEMBL
  ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
Pfam zf-CCHC UniProtKB/TrEMBL
PROSITE ZF_CCHC UniProtKB/TrEMBL
SMART ZnF_C2HC UniProtKB/TrEMBL
Superfamily-SCOP SSF57756 UniProtKB/TrEMBL
UniProt A0A8C2UIR3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Zcchc3  zinc finger CCHC-type containing 3    zinc finger, CCHC domain containing 3  Symbol and/or name change 5135510 APPROVED