Zcchc3 (zinc finger, CCHC domain containing 3)

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Gene: Zcchc3 (zinc finger, CCHC domain containing 3) Mus musculus

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Symbol:

Zcchc3

Name:

zinc finger, CCHC domain containing 3

RGD ID:

1621536

MGI Page

MGI

Description:

Predicted to enable double-stranded DNA binding activity. Involved in several processes, including cellular response to exogenous dsRNA; defense response to virus; and positive regulation of type I interferon production. Predicted to be active in cytoplasm. Is expressed in Meckel's cartilage; medulla oblongata basal plate mantle layer; skeleton; and ventral grey horn. Orthologous to human ZCCHC3 (zinc finger CCHC-type containing 3).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

2810406K24Rik; zinc finger CCHC domain-containing protein 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	152,253,875 - 152,256,711 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	152,253,875 - 152,256,947 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	152,411,956 - 152,415,044 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	152,411,955 - 152,415,027 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	152,237,692 - 152,240,780 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	152,104,396 - 152,106,468 (-)	NCBI		MGSCv36	mm8
Celera	2	158,224,872 - 158,227,955 (-)	NCBI		Celera
Cytogenetic Map	2	H1	NCBI
cM Map	2	74.98	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (EXP)

4-hydroxyphenyl retinamide (EXP)

6-propyl-2-thiouracil (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

amitrole (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (ISO)

choline (EXP)

cobalt dichloride (ISO)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

endosulfan (ISO)

folic acid (EXP)

ivermectin (ISO)

L-methionine (EXP)

lead(0) (ISO)

methimazole (ISO)

methyl methanesulfonate (ISO)

paracetamol (ISO)

potassium chromate (ISO)

sulfadimethoxine (ISO)

tetrachloromethane (ISO)

thioacetamide (ISO)

titanium dioxide (EXP)

tris(2-butoxyethyl) phosphate (ISO)

troglitazone (EXP)

urethane (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

activation of innate immune response (IBA,IMP,ISO)

cellular response to exogenous dsRNA (IBA,IMP,ISO)

defense response to virus (IBA,IMP)

detection of virus (IBA,ISO,ISS)

innate immune response (IEA)

positive regulation of RIG-I signaling pathway (IBA,ISO,ISS)

positive regulation of type I interferon production (IBA,IMP)

Cellular Component

cytoplasm (IBA,ISO,ISS)

Molecular Function

double-stranded DNA binding (IBA,ISO,ISS)

protein binding (ISO)

RNA binding (IEA)

zinc ion binding (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal innate immunity (IAGP)

decreased circulating CXCL10 level (IAGP)

decreased circulating interferon-beta level (IAGP)

decreased circulating interleukin-6 level (IAGP)

increased circulating bilirubin level (IEA)

increased circulating serum albumin level (IEA)

increased susceptibility to Herpesvirales infection (IAGP)

increased susceptibility to Herpesvirales infection induced morbidity/mortality (IAGP)

increased susceptibility to Poxviridae infection induced morbidity/mortality (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11125038	PMID:11217851	PMID:12466851	PMID:12477932	PMID:15172686	PMID:16141072	PMID:16141073
PMID:21267068	PMID:21873635	PMID:30135424	PMID:30193849	PMID:32133501	PMID:38355793

Genomics

Comparative Map Data

Zcchc3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	152,253,875 - 152,256,711 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	152,253,875 - 152,256,947 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	152,411,956 - 152,415,044 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	152,411,955 - 152,415,027 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	152,237,692 - 152,240,780 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	152,104,396 - 152,106,468 (-)	NCBI		MGSCv36	mm8
Celera	2	158,224,872 - 158,227,955 (-)	NCBI		Celera
Cytogenetic Map	2	H1	NCBI
cM Map	2	74.98	NCBI

ZCCHC3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	297,570 - 300,321 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	297,570 - 300,321 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	278,211 - 280,965 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	226,204 - 228,965 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	226,203 - 228,961	NCBI
Celera	20	373,047 - 375,805 (+)	NCBI		Celera
Cytogenetic Map	20	p13	NCBI
HuRef	20	229,449 - 232,207 (+)	NCBI		HuRef
CHM1_1	20	278,201 - 280,959 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	340,752 - 343,503 (+)	NCBI		T2T-CHM13v2.0

Zcchc3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	161,332,760 - 161,335,591 (-)	NCBI		GRCr8
mRatBN7.2	3	140,872,460 - 140,875,292 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	140,872,460 - 140,882,408 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	144,777,641 - 144,780,474 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	153,361,487 - 153,364,319 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	151,101,349 - 151,104,179 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	147,877,321 - 147,881,434 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	147,878,936 - 147,880,138 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	154,225,218 - 154,228,259 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	142,727,648 - 142,730,465 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	139,624,087 - 139,628,200 (-)	NCBI		Celera
Cytogenetic Map	3	q41	NCBI

Zcchc3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955597	195,002 - 196,231 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955597	194,912 - 197,697 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZCCHC3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	1,376,883 - 1,388,569 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	1,381,953 - 1,385,396 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	504,967 - 508,354 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	274,522 - 277,493 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

ZCCHC3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	20,537,849 - 20,540,098 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	20,190,822 - 20,193,772 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	21,231,074 - 21,234,025 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	21,232,594 - 21,234,183 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	20,506,754 - 20,509,706 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	20,612,306 - 20,615,248 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	21,043,099 - 21,046,051 (-)	NCBI		UU_Cfam_GSD_1.0

Zcchc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	72,532,832 - 72,547,892 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936670	3,048,914 - 3,049,809 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZCCHC3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	34,882,816 - 34,885,505 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	34,882,812 - 34,885,632 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	39,662,491 - 39,665,335 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZCCHC3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	35,422,903 - 35,426,145 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	35,423,430 - 35,424,638 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666078	7,594,906 - 7,598,250 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zcchc3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	1,399,481 - 1,400,701 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	1,399,405 - 1,400,980 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	657
Count of miRNA genes:	396
Interacting mature miRNAs:	451
Transcripts:	ENSMUST00000099207
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301907	Rends_m	renal disease susceptibility (mouse)			Not determined		2	135699221	169699361	Mouse
1301783	Bhr1_m	bronchial hyperresponsiveness 1 (mouse)			Not determined		2	142593476	178442452	Mouse
12790983	Bwq12_m	body weight QTL 12 (mouse)					2	148238204	181755017	Mouse
1301019	Bmd6_m	bone mineral density 6 (mouse)			Not determined		2	151778297	181755017	Mouse
12910799	Pwgrq2_m	pre-weaning growth rate QTL 2 (mouse)					2	118589253	160611165	Mouse
1558939	Gnf1_m	growth and fatness 1 (mouse)			Not determined		2	143773445	169117924	Mouse
13825247	Agoc2_m	agouti coat color QTL 2 (mouse)					2	151841920	159841920	Mouse
12910795	Pwbwq5_m	post-weaning body weight QTL 5 (mouse)					2	118589253	160611165	Mouse
1300867	Lore2_m	loss of righting induced by ethanol 2 (mouse)			Not determined		2	144515861	180896594	Mouse
1558917	Gct8_m	granulosa cell tumorigenesis 8 (mouse)			Not determined		2	149236907	181755017	Mouse
27226761	Feml18_m	femur length 18, 16 week (mouse)					2	94230345	154241920	Mouse
12910812	Pwgrq1_m	pre-weaning growth rate QTL 1 (mouse)					2	118589253	160611165	Mouse
12910814	Pwbwq1_m	pre-weaning body weight QTL 1 (mouse)					2	118589253	160611165	Mouse
1300751	Bdt1_m	bone density traits 1 (mouse)			Not determined		2	149988902	181755017	Mouse
10045885	Cplaq15_m	circadian period of locomotor activity 15 (mouse)			Not determined		2	110916118	154354667	Mouse
10054066	Bwq9_m	body weight QTL 9 (mouse)			Not determined		2	135699221	169699361	Mouse
1301822	Pgia2_m	proteoglycan induced arthritis 2 (mouse)			Not determined		2	123937311	157937424	Mouse
1558842	Tailq2_m	tail length QTL 2 (mouse)			Not determined		2	151640941	162737074	Mouse
10043956	Gnf5_m	growth and fatness 5 (mouse)			Not determined		2	135699221	169699361	Mouse
5491197	Mobq5_m	multigenic obesity QTL 5 (mouse)			Not determined		2	65269746	162518926	Mouse
10412080	Hylaq2_m	Hyperlocomotor activity related QTL 2 (mouse)			Not determined		2	151640941	164119146	Mouse
5491196	Mobq6_m	multigenic obesity QTL 6 (mouse)			Not determined		2	85724269	180896594	Mouse
1357862	Epfq1_m	epididymal fat pad weight QTL 1 (mouse)			Not determined		2	151640941	162737074	Mouse
1301031	Bdln3_m	body length 3 (mouse)			Not determined		2	127664019	161664118	Mouse
1357484	Bsbob_m	BSB obesity (mouse)			Not determined		2	143773445	165665019	Mouse
4141703	Chlq13_m	circulating hormone level QTL 13 (mouse)			Not determined		2	135699221	169699361	Mouse
11341717	Rvfs1_m	Rift Valley fever susceptibility 1 (mouse)					2	135432544	173449616	Mouse
27226788	Feml13_m	femur length 13, 10 week (mouse)					2	102630345	159941920	Mouse
4142211	Nilac3_m	nicotine induced locomotor activity 3 (mouse)			Not determined		2	148664893	181755017	Mouse
1301294	Hrtfm5_m	heart failure modifier 5 (mouse)			Not determined		2	122883015	156883131	Mouse
11038701	Ltpr2e_m	Leishmania tropica response 2e (mouse)					2	150212221	181755017	Mouse
11038702	Ltpr2_m	Leishmania tropica response 2 (mouse)					2	103095716	167212356	Mouse
4142450	Lmr16_m	leishmaniasis resistance 16 (mouse)			Not determined		2	150212221	181755017	Mouse
1301085	Lrnx10_m	learning-contextual 10 (mouse)			Not determined		2	150212221	181755017	Mouse
11353826	Bdln10_m	body length 10 (mouse)					2	140441482	174441482	Mouse
1300806	Aod4_m	autoimmune ovarian dysgenesis 4 (mouse)			Not determined		2	145228719	179228841	Mouse
4141033	Wg2d_m	weight gain in high growth mice 2d (mouse)			Not determined			143773445	160303008	Mouse
1357772	Scfq1_m	subcutaneous fat pad weight QTL 1 (mouse)			Not determined		2	151640941	162737074	Mouse
1301961	Bts1_m	bladder tumor susceptibility 1 (mouse)			Not determined		2	132024159	166024330	Mouse
1301618	Bglu1_m	blood glucose level 1 (mouse)			Not determined		2	117942930	174324863	Mouse
27226749	Femd10_m	femur midshaft diameter 10, 16 week (mouse)					2	124441920	168241920	Mouse
1302143	Bwq5_m	body weight (mouse)			Not determined		2	127664019	161664118	Mouse
1302013	Tbbmd3_m	total body bone mineral density 3 (mouse)			Not determined		2	145196949	179197085	Mouse
12880427	V25Dq3_m	vitamin D inactive form serum level QTL 3 (mouse)					2	129341920	163341920	Mouse
13504830	Bacsq1_m	baculum shape QTL 1 (mouse)					2	145716184	161016184	Mouse
12801456	Intmrm1_m	intima/media ratio modifier 1 (mouse)					2	142428347	176428450	Mouse
12801461	Intim1_m	intima modifier 1 (mouse)					2	142428347	176428450	Mouse
11049566	Lmr28e_m	leishmaniasis resistance 28e (mouse)					2	133144911	167145058	Mouse
11049567	Lmr28f_m	leishmaniasis resistance 28f (mouse)					2	133144911	167145058	Mouse
1301865	Hdlq19_m	HDL QTL 19 (mouse)			Not determined		2	145518775	179518926	Mouse
12910520	Scgq3_m	spontaneous crescentic glomerulonephritis QTL 3 (mouse)					2	151709273	174389124	Mouse
1300846	Pbwg11_m	postnatal body weight growth 11 (mouse)			Not determined		2	138966600	172966729	Mouse

Markers in Region

AI173521

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	4,977,936 - 4,978,083	UniSTS	GRCm38
GRCm38	2	152,412,989 - 152,413,136	UniSTS	GRCm38
MGSCv37	4	4,905,083 - 4,905,230	UniSTS	GRCm37
MGSCv37	2	152,238,725 - 152,238,872	UniSTS	GRCm37
Celera	4	4,899,662 - 4,899,809	UniSTS
Celera	2	158,225,900 - 158,226,047	UniSTS
Cytogenetic Map	2	H1	UniSTS
Whitehead/MRC_RH	4	1.21	UniSTS
Whitehead/MRC_RH	4	0.68	UniSTS

UniSTS:234862

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	4,977,419 - 4,977,539	UniSTS	GRCm38
GRCm38	2	152,412,486 - 152,412,606	UniSTS	GRCm38
MGSCv37	4	4,904,566 - 4,904,686	UniSTS	GRCm37
MGSCv37	2	152,238,222 - 152,238,342	UniSTS	GRCm37
Celera	4	4,899,145 - 4,899,265	UniSTS
Celera	2	158,225,397 - 158,225,517	UniSTS
Cytogenetic Map	2	H1	UniSTS

WI-15102

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	4,978,478 - 4,978,599	UniSTS	GRCm38
GRCm38	2	152,413,546 - 152,413,677	UniSTS	GRCm38
MGSCv37	4	4,905,625 - 4,905,746	UniSTS	GRCm37
MGSCv37	2	152,239,282 - 152,239,413	UniSTS	GRCm37
Celera	4	4,900,203 - 4,900,324	UniSTS
Celera	2	158,226,457 - 158,226,588	UniSTS
Cytogenetic Map	2	H1	UniSTS
Cytogenetic Map	4	A1	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_175126	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AA217759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK003428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK053859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL928568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC055755	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY262099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000099207 ⟹ ENSMUSP00000096813

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	152,253,875 - 152,256,947 (-)	Ensembl
GRCm38.p6 Ensembl	2	152,411,955 - 152,415,027 (-)	Ensembl

RefSeq Acc Id:

NM_175126 ⟹ NP_780335

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	152,253,875 - 152,256,711 (-)	NCBI
GRCm38	2	152,411,956 - 152,415,044 (-)	ENTREZGENE
MGSCv37	2	152,237,692 - 152,240,780 (-)	RGD
Celera	2	158,224,872 - 158,227,955 (-)	RGD
cM Map	2		ENTREZGENE

Sequence:

show sequence

GAGAAATGCCAAACCCTCGAGAGCGGTAGGGCGGGCGCTCGTCCGCAGAGGGGAGGCGAGCCGG
GGTCAAGACGAGCCGTCTCCGGCCGGCACGAATTCCCGCACGCAAGACTTCCAAGAGGGCGGAA
GCCAGAAGCGTCGGGTTTCAGAGCGGGGGCGGGGAGTCGCCCACGCAGCCCGCGGCCCTCATCC
CTCATCCCGAGCGGGAGCGCGCCATGGGCACCTCGGACCGCGGGAACGAGTGGAGGATGCTGGG
AAAGAGGTAACATGGCCACCGGCGGCGGAGCGGAGGAGGAGTCACAGCGGGGCCGGCCTCAGCT
CCCGCTCCCCGCGCGACCCGTGGCCCGCGTCGAGGAACCCGAGGGCGTCCGCGAGAAGATGGGC
TGGGCCCAGGTGGTCAAGAACCTGGCGGAGAAGAAGGGCGACTTCCGCGAGCCGCGGCGGCGCG
ACGAAACTGGCAGCGGTGCAAGTGGCGGGCTCGGCAGCCCCGGGGGCCTGGCCACCCCGAACCC
CGGCGACTTCCCACCCGCCGCTCGCGGGGACCCAAAGGGCCGCCGCAGAGACCCTACGGGTGAG
GCGTCAGACGCTTACAGGAAAAAGAGCGCGAGCGGCGCGGGAGACCCGAGTCGAAGGAAGAAGG
CCGAGGTGACGGCGGCCATGGCGACCCCCGCCAGGCCCGGCACGACCGAAGATGCCACCGAGCG
ACCGCTCCAGGACGAGCCACCGGCTGCCGGCCCGGGTAAGGGCCGCTTCCTCGTGCGCATCTGT
TTCCAGGGAGACGAAAGTGCCTGTCCGACCCGGGACTTCGTGGTGGGCGCGCTCATCCTGCGCT
CCATCGGCATGGACCCTGACGACATCTACGCGGTCATTCAGATCCCCGGCAGCCGCGAGTTCGA
CGTGAGTTTCCGATCCGCCGAAAAGCTAGCCCTGTTTCTCCGCGTCTACGAGGAGAAGCGAGAG
CTGGAGGACTGCTGGGAGAACTTTGTGGTTTTGGGGCGGAGCAGGTCCAGCCTGAAGACCCTCT
TCATCCTCTTCCGGAACGAGACCGTGGACGTGGAGGACATCGTGACCTGGCTCAAGCGCCACTG
CGACGTGCTGGCCGTGCCCGTGAAAGTGACCGACAGGTTCGGGATCTGGACCGGGGAGTACAAG
TGCGAGATCGAGCTGCGCCAGGGGGAGGGCGGAGTGAGGCACCTGCCCGGGGCCTTCTTCTTGG
GAGCGGAGAGGGGCTACAGCTGGTACAAGGGGCAGCCCAAGACGTGCTTTAAGTGTGGTTCCCG
GACCCACATGAGCGGCACCTGCACGCAGGACAGGTGTTTCAGGTGCGGGGAAGAGGGGCACCTG
AGCCCTTACTGCCGGAAGGTCATCGTGTGCAACCTCTGTGGCAAAAGAGGACACGCCTTTGCCC
AGTGTCCCAAAGCAGTTCACAATTCCGTGACAGCTCAGCTCACCAGCGTGGCGGGGCACTGAAG
GCGCGACTGCCTGCCAGGGTGAATACACTGCCAGCTTACCCCTCCCTTAAGTGCCAAAACTTTT
TTTTTAACCTTTTTTTTTTTAATCGTTTTGAATGGAGATATTTCTAAAACCTACCAGAGACGTT
CTCTCTATGCCTTTTTTAAACCGCGTGTGCTCCTTTTTGGCATGTTTGAAATGGTGAATTTTTG
CCCGTAAGAACTATTCAGAACCATTGCATACAGATATATTTTTTTTCTCCCGGTTTGTATTTGT
TTTTGGTACTTTCGTCTACTCCCCTCCCCACTCTACTTTTTATTTTACTACCTCCCTCCTCATA
CATTTAATCCTTAAAAGGTTTTAGCCCTTTGGGCCGCCTTGGTCATTATGCCTCCAGCCCAGGG
TACTGGGCCCAACGCGGGATAGACACTCTTATCAAGTCTTTCATTGAATCAAAACGGTATCGAC
TGGCTTCTGTCAAAAGTGTCTACCTTTTGCAACTCTCTGCTGGGCCCTTTTTATTTGCTGCTTC
TCTGTGGTATCAGACTTTGTGAAAACAGTGTTGCTAGAAGTGTGTATTCTGAATAAGCTCTGAA
TGGTGGCCAAGGGCCTCTCGTGGCAAAAAAAAAAAAAAAAAAAAATGTCCCTCCATTGTGACAG
CTCCATGTGGTGGCTAAGAAGCCGAGTTTCTACAAGATCACAGAGCCTAGGCTTCCCTGCTGGA
AAAGACCCAAGAGGTGGTTTTTGTTGAGTTTGGGAGGCGGGTTGCTTTTGGTTTTGTGTTTTGA
GACAGGGTCTCAGTGTGTCTCCCGTAGGCCGGCTTGGACCGGCTGCATTCAGAGAACAGGCTAG
CTGCAAACGTGCAGTAACTCTCCCTCCCGACTCTTGCCTTTGCCTCCCCGGACGGTGTTTTAAA
CTAACCTTTTGGTTTTCCAGCAGATAAAGTGAACCCAGAGAAGTTAAATTACAGGGACAAAGTA
CACAGCGCGGTGCCTCAGATAGCCCACAGTAGAGTCCCCTGACCCCAAGCCCGGTGCTCATCCC
ACTACCTCTCACACTTCACAACAATCTCCTCGACACTGCTGGGCCCAAAGTCCGCTCTCCACCG
TGCGGACCCCAGCAGTGTGGAGAAATCATCCCGAAAGAGCCCAGAAAGCTCGCCCTGCTGCTTG
GGAGCTAGGGAAGGAAGGGGCCAGGAGCACTCCAGGCTGCTTGCATCAGCCCTCGGAGTACCAC
ATCTTGAATGTTCCAGGGCCATCCCTTTCCACTATCACTGTCACCAGTGAGAAACGGTTCCCCT
CAGTAAAGAAACTTAGCAGACGTTTACATTTGCACCTCTGCCTCAGCCACTAGGAACCCTAGAG
AAGCTCACCCACAACGTTTAACCTCTGACCCTCAGGAGAAAGGTGGTTCTAACCCAGAATCACG
AGTGAGTGGTAAACCAGAAAGCGTTCTTGGGGAAACAGGCCAGGCCAGGCCAGGGCCTGGGTCA
ATGACATGTCACCAAGTTAGCTTGAAATTCGATAAACTGCTTTTCTTCAGCTGTTGTCTTCTCT
TTGCTGTTTTGCTATTTCCTCGTGGCTTAGAATGTAAAATCAATTGTTAAGATTTGTTCTGAAT
AAATATTTATCTTTCGT

hide sequence

Protein Sequences


Protein RefSeqs	NP_780335	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH55755	(Get FASTA)	NCBI Sequence Viewer
	BAC35560	(Get FASTA)	NCBI Sequence Viewer
	EDL05966	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000096813
	ENSMUSP00000096813.4
GenBank Protein	Q8BPK2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_780335 ⟸ NM_175126

- UniProtKB:

Q8BPK2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATGGGAEEESQRGRPQLPLPARPVARVEEPEGVREKMGWAQVVKNLAEKKGDFREPRRRDETG
SGASGGLGSPGGLATPNPGDFPPAARGDPKGRRRDPTGEASDAYRKKSASGAGDPSRRKKAEVT
AAMATPARPGTTEDATERPLQDEPPAAGPGKGRFLVRICFQGDESACPTRDFVVGALILRSIGM
DPDDIYAVIQIPGSREFDVSFRSAEKLALFLRVYEEKRELEDCWENFVVLGRSRSSLKTLFILF
RNETVDVEDIVTWLKRHCDVLAVPVKVTDRFGIWTGEYKCEIELRQGEGGVRHLPGAFFLGAER
GYSWYKGQPKTCFKCGSRTHMSGTCTQDRCFRCGEEGHLSPYCRKVIVCNLCGKRGHAFAQCPK
AVHNSVTAQLTSVAGH

hide sequence

Ensembl Acc Id:

ENSMUSP00000096813 ⟸ ENSMUST00000099207

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8BPK2-F1-model_v2	AlphaFold	Q8BPK2	1-400	view protein structure

Promoters

RGD ID:

6833101

Promoter ID:

MM_KWN:32361

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Lung, MEF_B4, MEF_B6

Transcripts:

NM_175126

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	2	152,239,506 - 152,240,697 (-)	MPROMDB

RGD ID:

6879182

Promoter ID:

EPDNEW_M3042

Type:

initiation region

Name:

Zcchc3_1

Description:

Mus musculus zinc finger, CCHC domain containing 3 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	2	152,414,789 - 152,414,849	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1915167	AgrOrtholog
Ensembl Genes	ENSMUSG00000074682	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000099207	ENTREZGENE
	ENSMUST00000099207.5	UniProtKB/Swiss-Prot
Gene3D-CATH	Zinc finger, CCHC-type	UniProtKB/Swiss-Prot
InterPro	ZCCHC3	UniProtKB/Swiss-Prot
	Znf_CCHC	UniProtKB/Swiss-Prot
	Znf_CCHC_sf	UniProtKB/Swiss-Prot
KEGG Report	mmu:67917	UniProtKB/Swiss-Prot
MGD	MGI:1915167	ENTREZGENE
NCBI Gene	67917	ENTREZGENE
PANTHER	PTHR22639	UniProtKB/Swiss-Prot
	ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 3	UniProtKB/Swiss-Prot
Pfam	zf-CCHC	UniProtKB/Swiss-Prot
PhenoGen	Zcchc3	PhenoGen
PROSITE	ZF_CCHC	UniProtKB/Swiss-Prot
SMART	ZnF_C2HC	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF57756	UniProtKB/Swiss-Prot
UniProt	Q8BPK2	ENTREZGENE, UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Mammalian Phenotype