Tas2r38 (taste 2 receptor member 38) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Tas2r38 (taste 2 receptor member 38) Chinchilla lanigera
Analyze
Symbol: Tas2r38
Name: taste 2 receptor member 38
RGD ID: 8771680
Description: ENCODES a protein that exhibits bitter taste receptor activity (ortholog); INVOLVED IN detection of chemical stimulus involved in sensory perception of bitter taste (ortholog); ASSOCIATED WITH alcohol use disorder (ortholog); Hereditary Pancreatitis (ortholog); RASopathy (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC102005055; taste receptor type 2 member 38
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554941,659,692 - 1,662,712 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tas2r38
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554941,659,692 - 1,662,712 (+)NCBIChiLan1.0ChiLan1.0
TAS2R38
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387141,972,631 - 141,973,773 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7141,972,631 - 141,973,773 (-)EnsemblGRCh38hg38GRCh38
GRCh377141,672,431 - 141,673,573 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367141,318,900 - 141,320,042 (-)NCBINCBI36Build 36hg18NCBI36
Build 347141,125,671 - 141,126,673NCBI
Celera7136,393,776 - 136,394,918 (-)NCBICelera
Cytogenetic Map7q34NCBI
HuRef7135,968,803 - 135,969,945 (-)NCBIHuRef
CHM1_17141,606,660 - 141,607,802 (-)NCBICHM1_1
T2T-CHM13v2.07143,288,364 - 143,289,506 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27141,010,626 - 141,011,768 (-)NCBI
Tas2r138
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39640,589,249 - 40,590,244 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl640,589,249 - 40,590,244 (-)EnsemblGRCm39 Ensembl
GRCm38640,612,315 - 40,613,310 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl640,612,315 - 40,613,310 (-)EnsemblGRCm38mm10GRCm38
MGSCv37640,562,314 - 40,563,309 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36640,541,922 - 40,542,917 (-)NCBIMGSCv36mm8
Celera640,599,002 - 40,599,998 (-)NCBICelera
Cytogenetic Map6B1NCBI
cM Map618.82NCBI
Tas2r138
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8470,395,042 - 70,396,037 (-)NCBIGRCr8
mRatBN7.2469,428,344 - 69,429,339 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl469,428,344 - 69,429,339 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx474,356,622 - 74,357,617 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0470,277,771 - 70,278,766 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0468,685,381 - 68,686,376 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0468,831,221 - 68,832,216 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl468,831,221 - 68,832,216 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04133,618,347 - 133,619,342 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4468,196,172 - 68,197,167 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera464,418,515 - 64,419,480 (-)NCBICelera
Cytogenetic Map4q23NCBI
TAS2R38
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26178,753,452 - 178,754,594 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1730,763,707 - 30,764,849 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07133,896,405 - 133,897,535 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17146,365,476 - 146,366,606 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7146,365,527 - 146,366,528 (-)Ensemblpanpan1.1panPan2
TAS2R38
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1167,224,077 - 7,225,027 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl167,224,023 - 7,225,027 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha168,083,355 - 8,084,305 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0167,145,620 - 7,146,570 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl167,145,566 - 7,146,570 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1167,099,027 - 7,099,976 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0166,941,424 - 6,942,374 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0167,009,125 - 7,010,075 (+)NCBIUU_Cfam_GSD_1.0
Tas2r38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511813,460,239 - 13,462,689 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365925,757,282 - 5,758,182 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAS2R38
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1187,982,188 - 7,983,921 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2188,357,518 - 8,358,525 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TAS2R38
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121110,671,289 - 110,674,330 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21110,672,521 - 110,673,519 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660727,359,669 - 7,360,843 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tas2r38
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476521,906,697 - 21,907,716 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013505004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01061419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_013505004   ⟹   XP_013360458
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554941,659,692 - 1,662,712 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013360458 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000012537.1
RefSeq Acc Id: XP_013360458   ⟸   XM_013505004
- UniProtKB: A0A8C2VFD2 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008669 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012683.1 UniProtKB/TrEMBL
InterPro TAS2R UniProtKB/TrEMBL
NCBI Gene LOC102005055 ENTREZGENE
PANTHER TASTE RECEPTOR TYPE 2 UniProtKB/TrEMBL
  TASTE RECEPTOR TYPE 2 MEMBER 38 UniProtKB/TrEMBL
Pfam TAS2R UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C2VFD2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Tas2r38  taste 2 receptor member 38  LOC102005055  taste receptor type 2 member 38  Symbol and/or name change 5135510 APPROVED
2015-08-25 LOC102005055  taste receptor type 2 member 38    taste receptor type 2 member 38-like  Symbol and/or name change 5135510 APPROVED