LOC102028200 (cytochrome c oxidase assembly factor 6 homolog) - Rat Genome Database

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Gene: LOC102028200 (cytochrome c oxidase assembly factor 6 homolog) Chinchilla lanigera
Analyze
Symbol: LOC102028200
Name: cytochrome c oxidase assembly factor 6 homolog
RGD ID: 8768094
Description: ENCODES a protein that exhibits copper ion binding (ortholog); INVOLVED IN mitochondrial cytochrome c oxidase assembly (ortholog); respiratory chain complex IV assembly (ortholog); ASSOCIATED WITH common variable immunodeficiency 14 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN mitochondrial intermembrane space (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554925,316,594 - 5,324,913 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC102028200
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554925,316,594 - 5,324,913 (-)NCBIChiLan1.0ChiLan1.0
COA6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381234,373,456 - 234,385,080 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1234,373,456 - 234,385,080 (+)EnsemblGRCh38hg38GRCh38
GRCh371234,509,202 - 234,520,826 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361232,576,052 - 232,586,414 (+)NCBINCBI36Build 36hg18NCBI36
Celera1207,780,333 - 207,790,700 (+)NCBICelera
Cytogenetic Map1q42.2NCBI
HuRef1205,002,255 - 205,012,839 (+)NCBIHuRef
CHM1_11235,781,494 - 235,792,155 (+)NCBICHM1_1
T2T-CHM13v2.01233,763,601 - 233,775,236 (+)NCBIT2T-CHM13v2.0
Coa6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398127,149,267 - 127,152,174 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8127,149,254 - 127,152,172 (+)EnsemblGRCm39 Ensembl
GRCm388126,422,501 - 126,425,435 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8126,422,515 - 126,425,433 (+)EnsemblGRCm38mm10GRCm38
MGSCv378128,946,401 - 128,949,335 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368129,308,618 - 129,311,524 (+)NCBIMGSCv36mm8
Celera8130,729,516 - 130,733,949 (+)NCBICelera
Cytogenetic Map8E2NCBI
cM Map874.08NCBI
Coa6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81971,293,066 - 71,295,668 (+)NCBIGRCr8
mRatBN7.21954,395,746 - 54,398,348 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1954,395,742 - 54,399,407 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1961,183,156 - 61,185,758 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01962,043,083 - 62,045,685 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01964,127,656 - 64,130,257 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01959,327,328 - 59,333,706 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1959,328,960 - 59,331,192 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01970,007,574 - 70,012,729 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1953,749,521 - 53,753,539 (+)NCBICelera
Cytogenetic Map19q12NCBI
LOC100973340
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2114,817,518 - 14,871,028 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1115,028,339 - 15,084,473 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01209,913,610 - 209,914,929 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11214,935,609 - 214,944,496 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1214,934,998 - 214,944,496 (+)Ensemblpanpan1.1panPan2
COA6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.145,447,252 - 5,454,500 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl45,447,249 - 5,454,456 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha45,426,137 - 5,434,318 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.045,464,242 - 5,472,425 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl45,465,164 - 5,472,265 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.145,476,834 - 5,485,012 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.045,595,299 - 5,602,555 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.045,817,161 - 5,825,343 (-)NCBIUU_Cfam_GSD_1.0
LOC101966578
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934441,646,576 - 41,650,580 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493648417,812,157 - 17,815,837 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COA6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11456,751,142 - 56,758,956 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21460,803,286 - 60,811,104 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COA6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12571,550,057 - 71,561,012 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2571,550,617 - 71,560,786 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605573,574,625 - 73,586,002 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101702099
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477515,942,940 - 15,945,964 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_005404956   ⟹   XP_005405013
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554925,316,594 - 5,324,912 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005404957   ⟹   XP_005405014
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554925,316,627 - 5,319,404 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005404958   ⟹   XP_005405015
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554925,316,594 - 5,319,312 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013504711   ⟹   XP_013360165
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554925,316,594 - 5,324,913 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005405013 (Get FASTA)   NCBI Sequence Viewer  
  XP_005405014 (Get FASTA)   NCBI Sequence Viewer  
  XP_005405015 (Get FASTA)   NCBI Sequence Viewer  
  XP_013360165 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000005307
  ENSCLAP00000005307.1
RefSeq Acc Id: XP_005405013   ⟸   XM_005404956
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005405015   ⟸   XM_005404958
- Peptide Label: isoform X3
- UniProtKB: A0A8C2UWK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005405014   ⟸   XM_005404957
- Peptide Label: isoform X3
- UniProtKB: A0A8C2UWK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360165   ⟸   XM_013504711
- Peptide Label: isoform X2
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003766 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000005403 ENTREZGENE
  ENSCLAT00000005403.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.140 UniProtKB/TrEMBL
InterPro COA6 UniProtKB/TrEMBL
  COX6B-like UniProtKB/TrEMBL
  Cyt_c_oxidase_su6B_sf UniProtKB/TrEMBL
NCBI Gene LOC102028200 ENTREZGENE
PANTHER CYTOCHROME C OXIDASE ASSEMBLY FACTOR 6 HOMOLOG UniProtKB/TrEMBL
  PTHR46690 UniProtKB/TrEMBL
Pfam COX6B UniProtKB/TrEMBL
PROSITE CHCH UniProtKB/TrEMBL
Superfamily-SCOP SSF47694 UniProtKB/TrEMBL
UniProt A0A8C2UWK1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 LOC102028200  cytochrome c oxidase assembly factor 6 homolog    uncharacterized LOC102028200  Symbol and/or name change 5135510 APPROVED