LOC101966578 (cytochrome c oxidase assembly factor 6 homolog) - Rat Genome Database

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Gene: LOC101966578 (cytochrome c oxidase assembly factor 6 homolog) Ictidomys tridecemlineatus
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Symbol: LOC101966578
Name: cytochrome c oxidase assembly factor 6 homolog
RGD ID: 12611656
Description: ENCODES a protein that exhibits copper ion binding (ortholog); INVOLVED IN mitochondrial ATP synthesis coupled electron transport (ortholog); plasma membrane ATP synthesis coupled electron transport (ortholog); respiratory chain complex IV assembly (ortholog); ASSOCIATED WITH fatal infantile cardioencephalomyopathy due to cytochrome c oxidase deficiency 1 (ortholog); fatal infantile cardioencephalomyopathy due to cytochrome c oxidase deficiency 4 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN mitochondrial intermembrane space (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934441,646,576 - 41,650,580 (-)NCBI
SpeTri2.0NW_00493648417,812,157 - 17,815,837 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
LOC101966578
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934441,646,576 - 41,650,580 (-)NCBI
SpeTri2.0NW_00493648417,812,157 - 17,815,837 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COA6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1234,373,456 - 234,385,080 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1234,373,456 - 234,385,068 (+)EnsemblGRCh38hg38GRCh38
GRCh381234,373,456 - 234,385,080 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371234,509,202 - 234,520,826 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361232,576,052 - 232,586,414 (+)NCBINCBI36hg18NCBI36
Celera1207,780,333 - 207,790,700 (+)NCBI
Cytogenetic Map1q42.2NCBI
HuRef1205,002,255 - 205,012,839 (+)NCBIHuRef
CHM1_11235,781,463 - 235,792,155 (+)NCBICHM1_1
Coa6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398127,149,240 - 127,152,174 (+)NCBIGRCm39mm39
GRCm39 Ensembl8127,149,254 - 127,152,172 (+)Ensembl
GRCm388126,422,501 - 126,425,435 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8126,422,515 - 126,425,433 (+)EnsemblGRCm38mm10GRCm38
MGSCv378128,946,401 - 128,949,335 (+)NCBIGRCm37mm9NCBIm37
MGSCv368129,308,618 - 129,311,524 (+)NCBImm8
Celera8130,729,516 - 130,733,949 (+)NCBICelera
Cytogenetic Map8E2NCBI
Coa6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21954,395,682 - 54,398,918 (+)NCBI
Rnor_6.0 Ensembl1959,328,960 - 59,331,192 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01959,327,328 - 59,333,706 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01970,007,574 - 70,012,729 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1953,749,521 - 53,753,539 (+)NCBICelera
Cytogenetic Map19q12NCBI
LOC102028200
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554925,316,594 - 5,324,913 (-)NCBIChiLan1.0ChiLan1.0
LOC100973340
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11214,935,609 - 214,944,496 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1214,934,998 - 214,944,496 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01209,913,610 - 209,914,929 (+)NCBIMhudiblu_PPA_v0panPan3
COA6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.145,447,252 - 5,454,500 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl45,447,249 - 5,454,456 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha45,426,137 - 5,434,318 (-)NCBI
ROS_Cfam_1.045,464,242 - 5,472,425 (-)NCBI
UMICH_Zoey_3.145,476,834 - 5,485,012 (-)NCBI
UNSW_CanFamBas_1.045,595,299 - 5,602,555 (-)NCBI
UU_Cfam_GSD_1.045,817,161 - 5,825,343 (-)NCBI
COA6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11456,751,142 - 56,758,956 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21460,803,286 - 60,811,104 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COA6
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12571,550,057 - 71,561,012 (+)NCBI
ChlSab1.1 Ensembl2571,550,617 - 71,560,786 (+)Ensembl
LOC101702099
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477515,942,940 - 15,945,964 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005320367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005320367   ⟹   XP_005320424
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934441,646,576 - 41,650,580 (-)NCBI
SpeTri2.0NW_00493648417,812,157 - 17,815,837 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005320424 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005320424   ⟸   XM_005320367
- UniProtKB: I3N4P9 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000023911 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000019345 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029214 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.140 UniProtKB/TrEMBL
InterPro COA6 UniProtKB/TrEMBL
  Cyt_c_oxidase_su6B UniProtKB/TrEMBL
  Cyt_c_oxidase_su6B_sf UniProtKB/TrEMBL
NCBI Gene LOC101966578 ENTREZGENE
PANTHER PTHR46690 UniProtKB/TrEMBL
Pfam COX6B UniProtKB/TrEMBL
Superfamily-SCOP SSF47694 UniProtKB/TrEMBL
UniProt I3N4P9 ENTREZGENE, UniProtKB/TrEMBL