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Gene: Sec13 (SEC13 homolog, nuclear pore and COPII coat complex component) Chinchilla lanigera

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Symbol:

Sec13

Name:

SEC13 homolog, nuclear pore and COPII coat complex component

RGD ID:

8766547

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cellular response to nutrient levels (ortholog); COPII-coated vesicle cargo loading (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); PARTICIPATES IN mRNA nuclear export pathway; ASSOCIATED WITH Atrioventricular Septal Defect 2 (ortholog); myoclonic-atonic epilepsy (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN COPII vesicle coat (ortholog); GATOR2 complex (ortholog); intracellular membrane-bounded organelle (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

SEC13 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955561	1,707,053 - 1,723,862 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955561	1,707,053 - 1,723,715 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Sec13	Chinchilla	Atrioventricular Septal Defect 2		ISO	SEC13 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Atrioventricular septal defect more ...	ClinVar	PMID:28492532
Sec13	Chinchilla	myoclonic-atonic epilepsy		ISO	SEC13 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Generalized myoclonic-atonic seizure	ClinVar	PMID:25865495 more ...
Sec13	Chinchilla	Neurodevelopmental Disorders		ISO	SEC13 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Sec13	Chinchilla	cellular response to nutrient levels	involved_in	ISO	SEC13 (Homo sapiens)	9068941	PMID:35831510 and PMID:36528027	UniProt	PMID:35831510 and PMID:36528027
Sec13	Chinchilla	COPII-coated vesicle cargo loading	involved_in	ISO	SEC13 (Homo sapiens)	9068941	PMID:17499046 and PMID:18843296	UniProt	PMID:17499046 and PMID:18843296
Sec13	Chinchilla	endoplasmic reticulum to Golgi vesicle-mediated transport	acts_upstream_of_or_within	ISO	Sec13 (Rattus norvegicus)	9068941	PMID:15728249	MGI	PMID:15728249 and REF_RGD_ID:8554056
Sec13	Chinchilla	positive regulation of TORC1 signaling	involved_in	ISO	SEC13 (Homo sapiens)	9068941	PMID:35831510 and PMID:36528027	UniProt	PMID:35831510 and PMID:36528027
Sec13	Chinchilla	protein exit from endoplasmic reticulum	involved_in	ISO	Sec13 (Mus musculus)	9068941	PMID:27354378	UniProt	PMID:27354378

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Sec13	Chinchilla	COPII vesicle coat	part_of	ISO	SEC13 (Homo sapiens)	9068941	PMID:17499046	UniProt	PMID:17499046
Sec13	Chinchilla	GATOR2 complex	part_of	ISO	SEC13 (Homo sapiens)	9068941	PMID:35831510 and PMID:36528027	UniProt	PMID:35831510 and PMID:36528027
Sec13	Chinchilla	intracellular membrane-bounded organelle	located_in	ISO	SEC13 (Homo sapiens)	9068941		HPA	GO_REF:0000052
Sec13	Chinchilla	kinetochore	located_in	ISO	SEC13 (Homo sapiens)	9068941	PMID:15146057	UniProt	PMID:15146057
Sec13	Chinchilla	lysosomal membrane	located_in	ISO	SEC13 (Homo sapiens)	9068941	PMID:28199306	UniProt	PMID:28199306
Sec13	Chinchilla	nuclear envelope	located_in	ISO	SEC13 (Homo sapiens)	9068941	PMID:15146057 and PMID:24315095	UniProt	PMID:15146057 and PMID:24315095
Sec13	Chinchilla	nuclear pore		ISO	Sec13 (Rattus norvegicus)	9068941		RGD	PMID:10087256 and REF_RGD_ID:10413910
Sec13	Chinchilla	nuclear pore outer ring	part_of	ISO	SEC13 (Homo sapiens)	9068941	PMID:17360435	UniProt	PMID:17360435
Sec13	Chinchilla	nucleoplasm	located_in	ISO	SEC13 (Homo sapiens)	9068941		HPA	GO_REF:0000052
Sec13	Chinchilla	protein-containing complex		ISO	Sec13 (Rattus norvegicus)	9068941		RGD	PMID:22303004 and REF_RGD_ID:10413913

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Sec13	Chinchilla	identical protein binding	enables	ISO	UniProtKB:P55735	9068941	PMID:18160040 and PMID:27194810	IntAct	PMID:18160040 and PMID:27194810
Sec13	Chinchilla	protein binding	enables	ISO	UniProtKB:P42858	9068941	PMID:32814053	IntAct	PMID:32814053
Sec13	Chinchilla	protein binding	enables	ISO	UniProtKB:P49687	9068941	PMID:18160040	IntAct	PMID:18160040
Sec13	Chinchilla	protein binding	enables	ISO	UniProtKB:B4DHB6 more ...	9068941	PMID:32296183	IntAct	PMID:32296183
Sec13	Chinchilla	protein binding	enables	ISO	UniProtKB:Q8NFH4	9068941	PMID:24981860	IntAct	PMID:24981860
Sec13	Chinchilla	protein binding	enables	ISO	UniProtKB:P52948 more ...	9068941	PMID:15146057	UniProt	PMID:15146057
Sec13	Chinchilla	protein binding	enables	ISO	UniProtKB:O00463 and UniProtKB:Q96JE7-2	9068941	PMID:25416956	IntAct	PMID:25416956
Sec13	Chinchilla	protein binding	enables	ISO	UniProtKB:P49687 more ...	9068941	PMID:27194810	IntAct	PMID:27194810
Sec13	Chinchilla	protein binding	enables	ISO	UniProtKB:Q8NFH4 and UniProtKB:Q96JE7-2	9068941	PMID:28514442	IntAct	PMID:28514442
Sec13	Chinchilla	protein binding	enables	ISO	UniProtKB:Q96EE3	9068941	PMID:26496610	IntAct	PMID:26496610
Sec13	Chinchilla	protein binding	enables	ISO	UniProtKB:O15027	9068941	PMID:17428803 more ...	UniProt	PMID:17428803 more ...
Sec13	Chinchilla	protein binding	enables	ISO	UniProtKB:Q6Y7W6	9068941	PMID:20696395	ParkinsonsUK-UCL	PMID:20696395
Sec13	Chinchilla	protein binding	enables	ISO	UniProtKB:O94979	9068941	PMID:16957052 and PMID:18692470	IntAct	PMID:16957052 and PMID:18692470
Sec13	Chinchilla	protein binding	enables	ISO	UniProtKB:O94979 more ...	9068941	PMID:35271311	IntAct	PMID:35271311
Sec13	Chinchilla	protein binding	enables	ISO	UniProtKB:O94979-1	9068941	PMID:16407955 and PMID:19822759	IntAct	PMID:16407955 and PMID:19822759
Sec13	Chinchilla	protein binding	enables	ISO	UniProtKB:O94979 more ...	9068941	PMID:33961781	IntAct	PMID:33961781
Sec13	Chinchilla	protein binding	enables	ISO	UniProtKB:Q96JE7	9068941	PMID:16189514	IntAct	PMID:16189514

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Sec13	Chinchilla	mRNA nuclear export pathway		ISO	SEC13 (Homo sapiens)	9068941		RGD	PMID:25184662 and REF_RGD_ID:9743947

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

PMID:22301074	PMID:30032202

Sec13
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955561	1,707,053 - 1,723,862 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955561	1,707,053 - 1,723,715 (-)	NCBI	ChiLan1.0	ChiLan1.0

SEC13
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	10,300,931 - 10,321,112 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	10,293,131 - 10,321,112 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	10,342,615 - 10,362,796 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	10,317,615 - 10,337,855 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	10,317,616 - 10,337,855	NCBI
Celera	3	10,278,423 - 10,298,663 (-)	NCBI		Celera
Cytogenetic Map	3	p25.3	NCBI
HuRef	3	10,277,973 - 10,298,216 (-)	NCBI		HuRef
CHM1_1	3	10,292,741 - 10,312,907 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	10,294,231 - 10,314,421 (-)	NCBI		T2T-CHM13v2.0

Sec13
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	113,705,013 - 113,717,642 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	113,705,023 - 113,717,704 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	113,728,052 - 113,740,681 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	113,728,062 - 113,740,743 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	113,678,046 - 113,690,675 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	113,693,829 - 113,706,458 (-)	NCBI		MGSCv36	mm8
Celera	6	115,553,563 - 115,566,192 (-)	NCBI		Celera
Cytogenetic Map	6	E3	NCBI
cM Map	6	52.84	NCBI

Sec13
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	148,433,344 - 148,446,735 (-)	NCBI		GRCr8
mRatBN7.2	4	146,877,739 - 146,891,130 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	146,875,524 - 146,891,173 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	152,262,389 - 152,275,663 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	148,043,260 - 148,056,534 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	146,671,488 - 146,684,762 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	145,686,186 - 145,699,577 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	145,686,193 - 145,699,577 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	208,982,585 - 208,995,976 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	149,637,058 - 149,650,449 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	149,881,901 - 149,895,290 (-)	NCBI
Celera	4	135,432,416 - 135,445,807 (-)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

SEC13
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	10,296,920 - 10,317,714 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	10,301,680 - 10,322,438 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	10,237,101 - 10,257,694 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	10,588,644 - 10,608,754 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	10,588,644 - 10,608,754 (-)	Ensembl	panpan1.1		panPan2

SEC13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	8,041,485 - 8,075,078 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	8,041,544 - 8,075,076 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	8,075,852 - 8,109,440 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	8,071,236 - 8,104,785 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	8,071,294 - 8,107,266 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	7,793,128 - 7,826,671 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	8,138,831 - 8,172,389 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	8,112,442 - 8,146,040 (+)	NCBI		UU_Cfam_GSD_1.0

Sec13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404942	15,879,223 - 15,896,270 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936602	3,013,337 - 3,030,486 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936602	3,013,490 - 3,030,489 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SEC13
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	66,480,169 - 66,524,384 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	66,483,620 - 66,524,411 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	73,547,020 - 73,570,002 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SEC13
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	46,336,909 - 46,357,435 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	46,336,829 - 46,355,723 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	120,179,801 - 120,200,334 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sec13
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	5,194,961 - 5,217,821 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624731	5,194,852 - 5,217,821 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005413078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013509095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013509096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01073864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01001853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000001711 ⟹ ENSCLAP00000001668

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955561	1,707,053 - 1,723,862 (-)	Ensembl

RefSeq Acc Id:

XM_005413078 ⟹ XP_005413135

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955561	1,707,053 - 1,723,715 (-)	NCBI

Sequence:

show sequence

CGCCAGCCCAGCGCCGGAAGTGGGCCTTTCGGAGGCGGGAGCTGCCACGTCTGAGACCCGAAGACGCCGCTGCCGCAGTTATGGTGTCTGTAATTAATACTGTGGACACCTCCCATGAGGACATGATT
CACGATGCCCAGATGGATTACTATGGCACCCGCCTGGCCACCTGCTCCTCAGACAGGTCTGTCAAAATCTTTGATGTGCGCAACGGAGGCCAGATCCTCATTGCTGACCTCAGGGGTCATGAGGGTCC
TGTGTGGCAGGTGGCCTGGGCCCACCCCATGTATGGCAACATCCTGGCATCTTGCTCCTATGACCGGAAAGTCATCATCTGGAAAGAGGAGAATGGCAGCTGGGAGAAGACCCATGAGCACTCAGGAC
ATGACTCGTCAGTGAACTCTGTGTGCTGGGCCCCCCATGACTACGGCCTGATCCTGGCCTGCGGGAGTTCGGATGGGGCCATCTCTCTGCTGACCTACACAGGCGAAGGCCAGTGGGAAGTGAAGAAG
ATCAACAATGCTCACACTATTGGCTGCAACGCTGTCAGCTGGGCCCCTGCTGTTGTACCTGGAAGCCTCATAGACCAGCCATCAGGGCAGAAACCCAGCTACATCAAGAAGTTTGCTTCCGGTGGCTG
TGATAACCTCATCAAACTCTGGAAGGAGGACGAGGACGGCCAGTGGAAGGAGGACCAGAAGCTGGAGGCGCATAGTGACTGGGTTCGAGATGTGGCCTGGGCCCCCTCCATCGGCCTACCCACCAGCA
CCATCGCCAGCTGCTCCCAGGATGGCCGAGTGTTCATCTGGACCTGTGAAGATCTCTCAGGCAACACGTGGTCACCTAAGTTGTTGCACAAGTTCAGTGACGTTGTGTGGCACGTGAGCTGGTCCATC
ACCGCCAATATCCTCGCTGTCTCAGGTGGTGACAACAAGGTAACCCTGTGGAAGGAGTCGCTGGATGGCCAGTGGGTCTGCATCAGTGATGTCAACAAGGGCCAGGGCTCCGTGTCGGCCTCCGCCGC
AGAGAGCCAGCAGAACGAGCAGTGACAGTGGCAGGGCCTGCGTGGCCTCCCGGGGTAGTGGCCGAACAGCTGAGAAAAGCCTGGCTCTGACAGGATCGTCTCCCCGGGAGCAGGCACAGCGTGGCCAC
AGCTCAGGCTTCTGCCTTCACGTGACTCAGAACAGCTCGCCGTGTCCTGCCCACCTGAAAGCATCCATGTTACGAAGAAGAAACTACAGACGACTTCGAATTTATTACTGTAAACTGTTCTAGTGTAC
CTTTGGGTTCAGGCATTATTAGGGGGAGTTGTTTCCAAATAAAATCATACTGCTTA

hide sequence

RefSeq Acc Id:

XM_013509095 ⟹ XP_013364549

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955561	1,707,053 - 1,723,679 (-)	NCBI

Sequence:

show sequence

GGGAGCTGCCACGTCTGAGACCCGAAGACGCCGCTGCCGCAGTTATGGTGTCTGTAATTAATAC
TGTGGACACCTCCCATGAGGACATGATTCCTGCAGGCTTCCTGAGCTGTCCTCCCTTTGCAGCACGATGCCCAGATGGATTACTATGGCACCCGCCTGGCCACCTGCTCCTCAGACAGGTCTGTCAAA
ATCTTTGATGTGCGCAACGGAGGCCAGATCCTCATTGCTGACCTCAGGGGTCATGAGGGTCCTGTGTGGCAGGTGGCCTGGGCCCACCCCATGTATGGCAACATCCTGGCATCTTGCTCCTATGACCG
GAAAGTCATCATCTGGAAAGAGGAGAATGGCAGCTGGGAGAAGACCCATGAGCACTCAGGACATGACTCGTCAGTGAACTCTGTGTGCTGGGCCCCCCATGACTACGGCCTGATCCTGGCCTGCGGGA
GTTCGGATGGGGCCATCTCTCTGCTGACCTACACAGGCGAAGGCCAGTGGGAAGTGAAGAAGATCAACAATGCTCACACTATTGGCTGCAACGCTGTCAGCTGGGCCCCTGCTGTTGTACCTGGAAGC
CTCATAGACCAGCCATCAGGGCAGAAACCCAGCTACATCAAGAAGTTTGCTTCCGGTGGCTGTGATAACCTCATCAAACTCTGGAAGGAGGACGAGGACGGCCAGTGGAAGGAGGACCAGAAGCTGGA
GGCGCATAGTGACTGGGTTCGAGATGTGGCCTGGGCCCCCTCCATCGGCCTACCCACCAGCACCATCGCCAGCTGCTCCCAGGATGGCCGAGTGTTCATCTGGACCTGTGAAGATCTCTCAGGCAACA
CGTGGTCACCTAAGTTGTTGCACAAGTTCAGTGACGTTGTGTGGCACGTGAGCTGGTCCATCACCGCCAATATCCTCGCTGTCTCAGGTGGTGACAACAAGGTAACCCTGTGGAAGGAGTCGCTGGAT
GGCCAGTGGGTCTGCATCAGTGATGTCAACAAGGGCCAGGGCTCCGTGTCGGCCTCCGCCGCAGAGAGCCAGCAGAACGAGCAGTGACAGTGGCAGGGCCTGCGTGGCCTCCCGGGGTAGTGGCCGAA
CAGCTGAGAAAAGCCTGGCTCTGACAGGATCGTCTCCCCGGGAGCAGGCACAGCGTGGCCACAGCTCAGGCTTCTGCCTTCACGTGACTCAGAACAGCTCGCCGTGTCCTGCCCACCTGAAAGCATCC
ATGTTACGAAGAAGAAACTACAGACGACTTCGAATTTATTACTGTAAACTGTTCTAGTGTACCTTTGGGTTCAGGCATTATTAGGGGGAGTTGTTTCCAAATAAAATCATACTGCTTA

hide sequence

RefSeq Acc Id:

XM_013509096 ⟹ XP_013364550

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955561	1,708,410 - 1,723,715 (-)	NCBI

Sequence:

show sequence

CGCCAGCCCAGCGCCGGAAGTGGGCCTTTCGGAGGCGGGAGCTGCCACGTCTGAGACCCGAAGACGCCGCTGCCGCAGTTATGGTGTCTGTAATTAATACTGTGGACACCTCCCATGAGGACATGATT
CACGATGCCCAGATGGATTACTATGGCACCCGCCTGGCCACCTGCTCCTCAGACAGGTCTGTCAAAATCTTTGATGTGCGCAACGGAGGCCAGATCCTCATTGCTGACCTCAGGGGTCATGAGGGTCC
TGTGTGGCAGGTGGCCTGGGCCCACCCCATGTATGGCAACATCCTGGCATCTTGCTCCTATGACCGGAAAGTCATCATCTGGAAAGAGGAGAATGGCAGCTGGGAGAAGACCCATGAGCACTCAGGAC
ATGACTCGTCAGTGAACTCTGTGTGCTGGGCCCCCCATGACTACGGCCTGATCCTGGCCTGCGGGAGTTCGGATGGGGCCATCTCTCTGCTGACCTACACAGGCGAAGGCCAGTGGGAAGTGAAGAAG
ATCAACAATGCTCACACTATTGGCTGCAACGCTGTCAGCTGGGCCCCTGCTGTTGTACCTGGAAGCCTCATAGACCAGCCATCAGGGCAGAAACCCAGCTACATCAAGAAGTTTGCTTCCGGTGGCTG
TGATAACCTCATCAAACTCTGGAAGGAGGACGAGGACGGCCAGTGGAAGGAGGACCAGAAGCTGGAGGCGCATAGTGACTGGGTTCGAGATGTGGCCTGGGCCCCCTCCATCGGCCTACCCACCAGCA
CCATCGCCAGCTGCTCCCAGGATGGCCGAGTGTTCATCTGGACCTGTGAAGATCTCTCAGGCAACACGTGGTCACCTAAGTTGTTGCACAAGTTCAGTGACGTTGTGTGGCACGTGAGCTGGTCCATC
ACCGCCAATATCCTCGCTGTCTCAGGTGGTGACAACAAGAACTGAGGACTGAGCCCAGAAACTCTGCCGAGCCCACCCCTACACCTGCCCAGGTTGAACTCAGACTTGTGATCCTCCTGCCTCGGCTT
CCCTCAGTGCTGGGATTGCAGGAGTATGCCACCGCACCCGGCTGTTCTTATTTAAAGATGAGTAATACAGTTAGTTTATCAGTCCTGCACTGACAGGTACGTGGGTTGTTTCCACCGACCTGAACACT
GGGCGTTGTGGCCATGGACAAGTGTGCAGTCAGCATGGAGCTTTTCCTGGCCCAAGTCTTTCCATCTGCAGTGCTCCCAAAAGATCAGGCTGCCCCACCTCAGAGCCATAAACACCCCTCAAAGGCCA
GCCAGATCACTTCCCCAATTCTAGGGAGTGCTAGAGCCAGTCCCAGAACTGAGGTTGTGGCAGCCAGCATGAGGCAGGGCCCCAGGCGTTTTCCTGCAGGCCTGCGTTGGTTCCTCCCCGCACACAGG
GTGCTATATGTGTGTGACTGGAGGGGGCTAGTTTTTTTAGATTTAGATTTTTTTTTTTAATGCGGTCTCCTAAATTTTCCTCTCTGGGGAGAAACCTTTTTCAGTTCTCCACCATTTCTTCTGCCCTG
GACCACAGAATTGTGTACTGATTGACCTGTGTCTTGCTGGACTATAGCAGCTCTCAAACCTTAACATCAAAACTTTCCCTTTCTCTTTCTCTCTTTCTCTCTGTCTTTCTCTCTTTCTCTCTGTCTT

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Protein RefSeqs	XP_005413135	(Get FASTA)	NCBI Sequence Viewer
	XP_013364549	(Get FASTA)	NCBI Sequence Viewer
	XP_013364550	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000001668
	ENSCLAP00000001668.1

RefSeq Acc Id:	XP_005413135 ⟸ XM_005413078
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2UQD8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEENGSWEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGA ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPSYIKKFASGGCDNLIKLWKEDEDGQWKEDQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCEDLSGNTWSPK LLHKFSDVVWHVSWSITANILAVSGGDNKVTLWKESLDGQWVCISDVNKGQGSVSASAAESQQNEQ hide sequence

RefSeq Acc Id:

XP_013364549 ⟸ XM_013509095

- Peptide Label:

isoform X2

- Sequence:

show sequence

MDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEENGSWEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNA
HTIGCNAVSWAPAVVPGSLIDQPSGQKPSYIKKFASGGCDNLIKLWKEDEDGQWKEDQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCEDLSGNTWSPKLLHKFSDVVWHVSWSITANI
LAVSGGDNKVTLWKESLDGQWVCISDVNKGQGSVSASAAESQQNEQ

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RefSeq Acc Id:

XP_013364550 ⟸ XM_013509096

- Peptide Label:

isoform X3

- Sequence:

show sequence

MVSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVA
WAHPMYGNILASCSYDRKVIIWKEENGSWEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPSYIKKFASGGCDNLIK
LWKEDEDGQWKEDQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCEDLSGNTWSPKLLHKFSDVVWHVSWSITANILAVSGGDNKN

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Ensembl Acc Id:

ENSCLAP00000001668 ⟸ ENSCLAT00000001711

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000001247	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000001711	ENTREZGENE
	ENSCLAT00000001711.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
InterPro	Sec13/Seh1_fam	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Sec13	ENTREZGENE
PANTHER	PTHR11024	UniProtKB/TrEMBL
	PTHR11024:SF2	UniProtKB/TrEMBL
Pfam	WD40	UniProtKB/TrEMBL
PROSITE	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
SMART	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50978	UniProtKB/TrEMBL
UniProt	A0A8C2UQD8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-08-25	Sec13	SEC13 homolog, nuclear pore and COPII coat complex component		SEC13 homolog (S. cerevisiae)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar

RGD Manual Annotations