Frmd5 (FERM domain containing 5) - Rat Genome Database

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Gene: Frmd5 (FERM domain containing 5) Chinchilla lanigera
Analyze
Symbol: Frmd5
Name: FERM domain containing 5
RGD ID: 8752460
Description: ENCODES a protein that exhibits integrin binding (ortholog); protein kinase binding (ortholog); INVOLVED IN negative regulation of cell motility (ortholog); positive regulation of cell adhesion (ortholog); regulation of cell migration (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive nonsyndromic deafness 16 (ortholog); Bloom syndrome (ortholog); FOUND IN adherens junction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FERM domain-containing protein 5
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541610,338,061 - 10,682,810 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541610,338,061 - 10,683,069 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Frmd5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541610,338,061 - 10,682,810 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541610,338,061 - 10,683,069 (-)NCBIChiLan1.0ChiLan1.0
FRMD5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381543,870,764 - 44,199,473 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1543,870,761 - 44,195,271 (-)EnsemblGRCh38hg38GRCh38
GRCh371544,162,962 - 44,487,469 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361541,953,022 - 42,274,721 (-)NCBINCBI36Build 36hg18NCBI36
Celera1521,055,188 - 21,376,921 (-)NCBICelera
Cytogenetic Map15q15.3NCBI
HuRef1520,988,457 - 21,310,775 (-)NCBIHuRef
CHM1_11544,283,981 - 44,605,691 (-)NCBICHM1_1
T2T-CHM13v2.01541,678,124 - 42,006,910 (-)NCBIT2T-CHM13v2.0
Frmd5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392121,376,010 - 121,637,580 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2121,376,010 - 121,637,568 (-)EnsemblGRCm39 Ensembl
GRCm382121,545,529 - 121,807,087 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2121,545,529 - 121,807,087 (-)EnsemblGRCm38mm10GRCm38
MGSCv372121,371,265 - 121,632,793 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362121,236,970 - 121,498,455 (-)NCBIMGSCv36mm8
Celera2122,692,965 - 122,957,219 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.42NCBI
Frmd5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83128,945,812 - 129,217,134 (-)NCBIGRCr8
mRatBN7.23108,492,099 - 108,763,715 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3108,474,562 - 108,763,498 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.03113,480,780 - 113,755,286 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3113,483,269 - 113,525,864 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03120,021,152 - 120,295,167 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43108,323,041 - 108,591,163 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3107,393,126 - 107,664,345 (-)NCBICelera
Cytogenetic Map3q35NCBI
FRMD5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21633,122,498 - 33,539,936 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11537,284,225 - 37,614,938 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01522,830,850 - 23,161,693 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11540,920,868 - 41,251,759 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1540,919,053 - 41,250,981 (-)Ensemblpanpan1.1panPan2
FRMD5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13010,611,986 - 10,923,444 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3010,614,406 - 10,923,261 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3010,670,228 - 10,980,961 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03010,748,561 - 11,060,094 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3010,748,564 - 11,060,055 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13010,657,550 - 10,967,594 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03010,779,973 - 11,091,358 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03010,899,408 - 11,210,322 (-)NCBIUU_Cfam_GSD_1.0
Frmd5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864089,077,981 - 89,385,165 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364716,928,398 - 7,232,765 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364716,926,044 - 7,233,006 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FRMD5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1127,317,701 - 127,650,665 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11127,317,660 - 127,653,112 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21142,444,648 - 142,478,602 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FRMD5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12638,847,310 - 39,179,487 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2639,119,525 - 39,170,954 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048101,819,536 - 102,191,869 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Frmd5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480410,906,958 - 11,239,995 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480410,906,085 - 11,240,249 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005381411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005381412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005381413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005381414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01017135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDI01278383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000020087   ⟹   ENSCLAP00000019894
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541610,338,061 - 10,389,976 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000020088   ⟹   ENSCLAP00000019895
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541610,339,481 - 10,392,143 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000020089   ⟹   ENSCLAP00000019896
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541610,340,188 - 10,682,810 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000020090   ⟹   ENSCLAP00000019897
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541610,340,188 - 10,343,035 (-)Ensembl
RefSeq Acc Id: XM_005381411   ⟹   XP_005381468
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541610,338,061 - 10,683,069 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005381412   ⟹   XP_005381469
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541610,338,061 - 10,683,069 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005381413   ⟹   XP_005381470
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541610,338,061 - 10,683,069 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005381414   ⟹   XP_005381471
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541610,338,061 - 10,683,069 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005381469   ⟸   XM_005381412
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VZD1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005381470   ⟸   XM_005381413
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VZD1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005381471   ⟸   XM_005381414
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VZD1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005381468   ⟸   XM_005381411
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VUV5 (UniProtKB/TrEMBL),   A0A8C2VWI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000019894   ⟸   ENSCLAT00000020087
RefSeq Acc Id: ENSCLAP00000019895   ⟸   ENSCLAT00000020088
RefSeq Acc Id: ENSCLAP00000019896   ⟸   ENSCLAT00000020089
RefSeq Acc Id: ENSCLAP00000019897   ⟸   ENSCLAT00000020090
Protein Domains
FERM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013639 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000020087.1 UniProtKB/TrEMBL
  ENSCLAT00000020088 ENTREZGENE
  ENSCLAT00000020088.1 UniProtKB/TrEMBL
  ENSCLAT00000020089 ENTREZGENE
  ENSCLAT00000020089.1 UniProtKB/TrEMBL
  ENSCLAT00000020090.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.80.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro Band_41_domain UniProtKB/TrEMBL
  Ez/rad/moesin-like UniProtKB/TrEMBL
  FERM-adjacent UniProtKB/TrEMBL
  FERM/acyl-CoA-bd_prot_sf UniProtKB/TrEMBL
  FERM_2 UniProtKB/TrEMBL
  FERM_central UniProtKB/TrEMBL
  FERM_CS UniProtKB/TrEMBL
  FERM_domain UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  FERM_PH-like_C UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
NCBI Gene Frmd5 ENTREZGENE
PANTHER 4.1 G PROTEIN UniProtKB/TrEMBL
  FERM DOMAIN-CONTAINING PROTEIN 5 UniProtKB/TrEMBL
Pfam FERM_C UniProtKB/TrEMBL
  FERM_M UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  PF08736 UniProtKB/TrEMBL
PRINTS BAND41 UniProtKB/TrEMBL
  ERMFAMILY UniProtKB/TrEMBL
PROSITE FERM_1 UniProtKB/TrEMBL
  FERM_3 UniProtKB/TrEMBL
SMART B41 UniProtKB/TrEMBL
  FERM_C UniProtKB/TrEMBL
  SM01195 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF47031 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A8C2VUV5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VWI7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VXH9_CHILA UniProtKB/TrEMBL
  A0A8C2VZD1 ENTREZGENE, UniProtKB/TrEMBL