Imported Disease Annotations - MGITerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | autism spectrum disorder | | ISS | Frmd5 (Mus musculus) | 13592920 | | MouseDO | | |
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Imported Disease Annotations - MGITerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | autism spectrum disorder | | ISS | Frmd5 (Mus musculus) | 13592920 | | MouseDO | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | GOA pipeline | RGD automated data pipeline |
3. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
4. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Frmd5 (Rattus norvegicus - Norway rat) |
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FRMD5 (Homo sapiens - human) |
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Frmd5 (Mus musculus - house mouse) |
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Frmd5 (Chinchilla lanigera - long-tailed chinchilla) |
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FRMD5 (Pan paniscus - bonobo/pygmy chimpanzee) |
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FRMD5 (Canis lupus familiaris - dog) |
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Frmd5 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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FRMD5 (Sus scrofa - pig) |
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FRMD5 (Chlorocebus sabaeus - green monkey) |
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Frmd5 (Heterocephalus glaber - naked mole-rat) |
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Variants in Frmd5
1562 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
BF403306 |
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AU047173 |
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RH144100 |
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BE096793 |
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BE106952 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 33 | 8 | 74 | 8 | |||||||||
Low | 2 | 10 | 16 | 10 | 9 | 10 | 1 | 1 | 22 | 33 | 11 | 1 | |
Below cutoff | 1 | 26 | 24 | 10 | 24 | 7 | 9 | 11 | 7 |
RefSeq Transcripts | XM_008762211 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_008762212 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008762213 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008762214 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008775494 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008775495 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008775496 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008775497 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008775498 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039106826 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039106827 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039106829 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039106833 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039106834 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039106836 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039106837 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063284975 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063284976 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063284977 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063284978 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063284979 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063284980 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_010064879 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC097745 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
CH473949 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000003 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000046659 ⟹ ENSRNOP00000043316 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000064663 ⟹ ENSRNOP00000060835 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000105786 ⟹ ENSRNOP00000094330 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000111408 ⟹ ENSRNOP00000081807 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000117572 ⟹ ENSRNOP00000081952 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_008762211 ⟹ XP_008760433 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_008762212 ⟹ XP_008760434 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_008762213 ⟹ XP_008760435 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_008762214 ⟹ XP_008760436 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039106826 ⟹ XP_038962754 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039106827 ⟹ XP_038962755 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039106829 ⟹ XP_038962757 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039106833 ⟹ XP_038962761 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039106834 ⟹ XP_038962762 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039106836 ⟹ XP_038962764 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039106837 ⟹ XP_038962765 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063284975 ⟹ XP_063141045 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063284976 ⟹ XP_063141046 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063284977 ⟹ XP_063141047 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063284978 ⟹ XP_063141048 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063284979 ⟹ XP_063141049 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063284980 ⟹ XP_063141050 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_010064879 | ||||||||
Type: | NON-CODING | ||||||||
Position: |
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Protein RefSeqs | XP_008760433 | (Get FASTA) | NCBI Sequence Viewer |
XP_008760434 | (Get FASTA) | NCBI Sequence Viewer | |
XP_008760435 | (Get FASTA) | NCBI Sequence Viewer | |
XP_008760436 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038962754 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038962755 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038962757 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038962761 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038962762 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038962764 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038962765 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063141045 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063141046 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063141047 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063141048 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063141049 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063141050 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | EDL80005 | (Get FASTA) | NCBI Sequence Viewer |
EDL80006 | (Get FASTA) | NCBI Sequence Viewer | |
EDL80007 | (Get FASTA) | NCBI Sequence Viewer | |
EDL80008 | (Get FASTA) | NCBI Sequence Viewer | |
EDL80009 | (Get FASTA) | NCBI Sequence Viewer | |
EDL80010 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000043316.5 | ||
ENSRNOP00000060835.3 | |||
ENSRNOP00000081807.1 | |||
ENSRNOP00000081952.1 | |||
ENSRNOP00000094330.1 |
RefSeq Acc Id: | XP_008760436 ⟸ XM_008762214 |
- Peptide Label: | isoform X3 |
- UniProtKB: | A0A8I6G8G4 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_008760435 ⟸ XM_008762213 |
- Peptide Label: | isoform X12 |
- UniProtKB: | A0A8I6G8G4 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_008760433 ⟸ XM_008762211 |
- Peptide Label: | isoform X5 |
- UniProtKB: | A0A8I6G8G4 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_008760434 ⟸ XM_008762212 |
- Peptide Label: | isoform X11 |
- UniProtKB: | A0A8I6G8G4 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000043316 ⟸ ENSRNOT00000046659 |
RefSeq Acc Id: | ENSRNOP00000060835 ⟸ ENSRNOT00000064663 |
RefSeq Acc Id: | XP_038962761 ⟸ XM_039106833 |
- Peptide Label: | isoform X6 |
- UniProtKB: | A0A8I6G8G4 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038962762 ⟸ XM_039106834 |
- Peptide Label: | isoform X8 |
- UniProtKB: | A0A8I6G8G4 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038962755 ⟸ XM_039106827 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A0A8I6G8G4 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038962754 ⟸ XM_039106826 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8I6G8G4 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038962757 ⟸ XM_039106829 |
- Peptide Label: | isoform X4 |
- UniProtKB: | A0A8I6G8G4 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038962764 ⟸ XM_039106836 |
- Peptide Label: | isoform X14 |
RefSeq Acc Id: | XP_038962765 ⟸ XM_039106837 |
- Peptide Label: | isoform X14 |
RefSeq Acc Id: | ENSRNOP00000094330 ⟸ ENSRNOT00000105786 |
RefSeq Acc Id: | ENSRNOP00000081952 ⟸ ENSRNOT00000117572 |
RefSeq Acc Id: | ENSRNOP00000081807 ⟸ ENSRNOT00000111408 |
RefSeq Acc Id: | XP_063141046 ⟸ XM_063284976 |
- Peptide Label: | isoform X9 |
- UniProtKB: | A0A8I6B053 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063141048 ⟸ XM_063284978 |
- Peptide Label: | isoform X10 |
RefSeq Acc Id: | XP_063141045 ⟸ XM_063284975 |
- Peptide Label: | isoform X7 |
RefSeq Acc Id: | XP_063141047 ⟸ XM_063284977 |
- Peptide Label: | isoform X10 |
RefSeq Acc Id: | XP_063141049 ⟸ XM_063284979 |
- Peptide Label: | isoform X13 |
RefSeq Acc Id: | XP_063141050 ⟸ XM_063284980 |
- Peptide Label: | isoform X15 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-F1LT14-F1-model_v2 | AlphaFold | F1LT14 | 1-485 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:1561554 | AgrOrtholog |
BioCyc Gene | G2FUF-48123 | BioCyc |
Ensembl Genes | ENSRNOG00000016189 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000046659.6 | UniProtKB/TrEMBL |
ENSRNOT00000064663.3 | UniProtKB/TrEMBL | |
ENSRNOT00000105786.1 | UniProtKB/TrEMBL | |
ENSRNOT00000111408.1 | UniProtKB/TrEMBL | |
ENSRNOT00000117572.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.20.80.10 | UniProtKB/TrEMBL |
2.30.29.30 | UniProtKB/TrEMBL | |
InterPro | Band_41_domain | UniProtKB/TrEMBL |
Ez/rad/moesin-like | UniProtKB/TrEMBL | |
FERM-adjacent | UniProtKB/TrEMBL | |
FERM/acyl-CoA-bd_prot_3-hlx | UniProtKB/TrEMBL | |
FERM_2 | UniProtKB/TrEMBL | |
FERM_central | UniProtKB/TrEMBL | |
FERM_CS | UniProtKB/TrEMBL | |
FERM_domain | UniProtKB/TrEMBL | |
FERM_N | UniProtKB/TrEMBL | |
FERM_PH-like_C | UniProtKB/TrEMBL | |
PH_like_dom | UniProtKB/TrEMBL | |
Ubiquitin-rel_dom | UniProtKB/TrEMBL | |
NCBI Gene | 311362 | ENTREZGENE |
PANTHER | 4.1 G PROTEIN | UniProtKB/TrEMBL |
FERM DOMAIN-CONTAINING PROTEIN 5 | UniProtKB/TrEMBL | |
Pfam | FERM_C | UniProtKB/TrEMBL |
FERM_M | UniProtKB/TrEMBL | |
FERM_N | UniProtKB/TrEMBL | |
PF08736 | UniProtKB/TrEMBL | |
PhenoGen | Frmd5 | PhenoGen |
PRINTS | BAND41 | UniProtKB/TrEMBL |
ERMFAMILY | UniProtKB/TrEMBL | |
PROSITE | FERM_1 | UniProtKB/TrEMBL |
FERM_3 | UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000016189 | RatGTEx |
SMART | B41 | UniProtKB/TrEMBL |
FERM_C | UniProtKB/TrEMBL | |
SM01195 | UniProtKB/TrEMBL | |
Superfamily-SCOP | FERM_3-hlx | UniProtKB/TrEMBL |
PH domain-like | UniProtKB/TrEMBL | |
SSF54236 | UniProtKB/TrEMBL | |
UniProt | A0A8I5ZSR0_RAT | UniProtKB/TrEMBL |
A0A8I6B053 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8I6G8G4 | ENTREZGENE, UniProtKB/TrEMBL | |
A6HPQ5_RAT | UniProtKB/TrEMBL | |
F1LT14_RAT | UniProtKB/TrEMBL | |
F1LX12_RAT | UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2008-02-29 | Frmd5 | FERM domain containing 5 | RGD1561554_predicted | similar to MGC14161 protein (predicted) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2006-03-07 | RGD1561554_predicted | similar to MGC14161 protein (predicted) | LOC311362 | similar to MGC14161 protein | Symbol and Name status set to approved | 1299863 | APPROVED |
2006-02-09 | LOC311362 | similar to MGC14161 protein | Symbol and Name status set to provisional | 70820 | PROVISIONAL |