Kcnc3 (potassium voltage-gated channel subfamily C member 3) - Rat Genome Database

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Pathways
Gene: Kcnc3 (potassium voltage-gated channel subfamily C member 3) Chinchilla lanigera
Analyze
Symbol: Kcnc3
Name: potassium voltage-gated channel subfamily C member 3
RGD ID: 8745766
Description: ENCODES a protein that exhibits voltage-gated potassium channel activity (ortholog); INVOLVED IN corpus callosum development (ortholog); cortical actin cytoskeleton organization (ortholog); optic nerve development (ortholog); ASSOCIATED WITH Abnormal Reflexes (ortholog); acute myeloid leukemia (ortholog); brachydactyly (ortholog); FOUND IN axolemma (ortholog); axon terminus (ortholog); calyx of Held (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: potassium channel, voltage gated Shaw related subfamily C, member 3; potassium voltage-gated channel, Shaw-related subfamily, member 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955559782,842 - 795,455 (+)NCBIChiLan1.0ChiLan1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Kcnc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955559782,842 - 795,455 (+)NCBIChiLan1.0ChiLan1.0
KCNC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381950,311,937 - 50,333,536 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1950,311,937 - 50,333,515 (-)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371950,815,194 - 50,836,793 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361955,510,577 - 55,524,446 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341955,510,576 - 55,524,446NCBI
Celera1947,869,096 - 47,882,964 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1947,156,998 - 47,170,888 (-)NCBIHuRef
CHM1_11950,820,581 - 50,834,417 (-)NCBICHM1_1
T2T-CHM13v2.01953,399,467 - 53,421,072 (-)NCBIT2T-CHM13v2.0
Kcnc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,236,405 - 44,254,175 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,240,088 - 44,254,178 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38744,586,939 - 44,604,751 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,590,664 - 44,604,754 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37751,846,256 - 51,860,121 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36744,459,162 - 44,464,606 (+)NCBIMGSCv36mm8
Celera740,040,752 - 40,054,619 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.85NCBI
Kcnc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,217,472 - 104,231,677 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1104,217,472 - 104,231,672 (+)EnsemblGRCr8
mRatBN7.2195,080,960 - 95,095,165 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,080,960 - 95,095,160 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1100,466,349 - 100,480,553 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01108,939,005 - 108,953,209 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,229,418 - 102,243,622 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1102,854,201 - 102,868,405 (+)NCBI
Lyon_Normotensive1107,964,264 - 107,978,468 (+)NCBI
Lyon_Hypertensive1104,497,573 - 104,511,777 (+)NCBI
F344_StmMcwi1102,954,725 - 102,968,929 (+)NCBI
Rnor_6.01100,593,453 - 100,607,874 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1100,593,680 - 100,607,874 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01101,658,860 - 101,673,261 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4195,066,641 - 95,080,847 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera189,343,211 - 89,357,385 (+)NCBICelera
RGSC_v3.1195,144,751 - 95,158,955 (+)NCBI
RH 3.4 Map1905.4RGD
Cytogenetic Map1q22NCBI
KCNC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22056,380,228 - 56,394,491 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11958,298,616 - 58,315,820 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01947,275,213 - 47,296,809 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11956,180,048 - 56,200,789 (-)NCBIPanPan1.1PanPan1.1panPan2
KCNC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11106,366,657 - 106,371,062 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1105,938,945 - 105,953,893 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01106,876,948 - 106,891,910 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1106,876,948 - 106,889,808 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11106,549,006 - 106,563,944 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,190,556 - 106,205,438 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01107,031,217 - 107,046,175 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Kcnc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap1156,063,384 - 6,082,170 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_02440934922,310,012 - 22,327,824 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936889192,129 - 202,519 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936889185,349 - 203,847 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl655,204,101 - 55,217,074 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1655,204,045 - 55,216,875 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2651,050,617 - 51,065,728 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCNC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap167,762,571 - 7,777,516 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366607323,357,494 - 23,375,607 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.1643,374,151 - 43,391,418 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl643,382,611 - 43,391,416 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Kcnc3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248324,161,510 - 4,175,744 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046248324,161,068 - 4,175,721 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Kcnc3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12154,930,242 - 154,944,622 (-)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_013509065   ⟹   XP_013364519
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955559782,842 - 795,455 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013364519 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013364519   ⟸   XM_013509065
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Kcnc3 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Kcnc3  potassium voltage-gated channel subfamily C member 3    potassium channel, voltage gated Shaw related subfamily C, member 3  Symbol and/or name change 5135510 APPROVED
2015-08-25 Kcnc3  potassium channel, voltage gated Shaw related subfamily C, member 3    potassium voltage-gated channel, Shaw-related subfamily, member 3  Symbol and/or name change 5135510 APPROVED