Cd320 (CD320 molecule) - Rat Genome Database

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Gene: Cd320 (CD320 molecule) Chinchilla lanigera
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Symbol: Cd320
Name: CD320 molecule
RGD ID: 8744935
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); cargo receptor activity (ortholog); cobalamin binding (ortholog); INVOLVED IN B cell costimulation (ortholog); cobalamin transport (ortholog); positive regulation of B cell proliferation (ortholog); ASSOCIATED WITH methylmalonic acidemia due to transcobalamin receptor defect (ortholog); ovarian serous cystadenocarcinoma (ortholog); uterine corpus endometrial carcinoma (ortholog); FOUND IN endoplasmic reticulum (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CD320 antigen
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555631,084,474 - 1,093,111 (+)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049555631,084,523 - 1,089,395 (+)NCBIChiLan1.0ChiLan1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cd320
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555631,084,474 - 1,093,111 (+)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049555631,084,523 - 1,089,395 (+)NCBIChiLan1.0ChiLan1.0
CD320
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38198,302,127 - 8,308,358 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl198,302,123 - 8,308,379 (-)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh37198,367,011 - 8,373,242 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36198,273,011 - 8,279,239 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34198,273,010 - 8,279,239NCBI
Celera198,223,534 - 8,229,765 (-)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef198,021,040 - 8,027,272 (-)NCBIHuRef
CHM1_1198,366,510 - 8,372,742 (-)NCBICHM1_1
T2T-CHM13v2.0198,288,656 - 8,294,880 (-)NCBIT2T-CHM13v2.0
Cd320
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,062,065 - 34,068,748 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,062,059 - 34,083,496 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381733,843,091 - 33,849,774 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1733,843,091 - 33,849,774 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv371733,980,036 - 33,986,719 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361733,449,214 - 33,456,005 (+)NCBIMGSCv36mm8
Celera1736,600,303 - 36,608,793 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
Cd320
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8715,328,320 - 15,334,138 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl715,311,286 - 15,334,138 (+)EnsemblGRCr8
mRatBN7.2714,626,171 - 14,631,976 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl714,609,146 - 14,631,976 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx717,634,732 - 17,640,527 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0719,500,017 - 19,505,812 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0717,380,359 - 17,386,154 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd718,172,569 - 18,178,364 (+)NCBI
Lyon_Normotensive718,335,934 - 18,341,729 (+)NCBI
Lyon_Hypertensive718,411,436 - 18,417,231 (+)NCBI
F344_StmMcwi716,774,742 - 16,780,537 (+)NCBI
Rnor_6.0718,700,445 - 18,706,244 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl718,700,344 - 18,706,244 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.0718,878,058 - 18,883,844 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4716,338,136 - 16,343,892NCBIRGSC_v3.4RGSC_v3.4rn4
RGSC_v3.1716,338,135 - 16,343,892NCBI
Cytogenetic Map7q13NCBI
CD320
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22012,969,658 - 12,975,998 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11912,086,331 - 12,092,672 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0197,587,760 - 7,594,055 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1198,438,955 - 8,445,464 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl198,438,955 - 8,445,464 (-)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
CD320
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12052,886,087 - 52,890,361 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2052,886,087 - 52,890,366 (-)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2052,687,555 - 52,691,829 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02053,414,068 - 53,418,342 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2053,414,068 - 53,418,348 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12052,616,774 - 52,621,039 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02053,062,048 - 53,066,321 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02053,293,654 - 53,297,928 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cd320
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap125,262,263 - 5,266,811 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_024405118212,687,660 - 212,692,222 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365885,142,561 - 5,147,074 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365885,142,561 - 5,147,111 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD320
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl270,965,672 - 70,970,288 (+)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1270,961,897 - 70,970,289 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CD320
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap1654,142,857 - 54,150,785 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366607412,617,008 - 12,624,955 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.167,666,201 - 7,673,088 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl67,665,895 - 7,673,599 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Cd320
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248281,102,016 - 1,106,314 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046248281,102,306 - 1,106,211 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl2914,561,292 - 14,566,682 (+)Ensembl
Cd320
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11158,568,912 - 158,574,590 (-)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000003382   ⟹   ENSCLAP00000003315
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555631,084,474 - 1,093,111 (+)Ensembl
RefSeq Acc Id: XM_005413134   ⟹   XP_005413191
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555631,084,523 - 1,089,395 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013509154   ⟹   XP_013364608
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555631,085,098 - 1,089,395 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005413191 (Get FASTA)   NCBI Sequence Viewer  
  XP_013364608 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000003315
  ENSCLAP00000003315.1
RefSeq Acc Id: XP_005413191   ⟸   XM_005413134
- UniProtKB: A0A8C2URN7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013364608   ⟸   XM_013509154
- UniProtKB: A0A8C2URN7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000003315   ⟸   ENSCLAT00000003382


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002375 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003382 ENTREZGENE
  ENSCLAT00000003382.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.400.10 UniProtKB/TrEMBL
InterPro LDL_receptor-like_sf UniProtKB/TrEMBL
  LDLR-related UniProtKB/TrEMBL
  LDLR_class-A_CS UniProtKB/TrEMBL
  LDrepeatLR_classA_rpt UniProtKB/TrEMBL
NCBI Gene Cd320 ENTREZGENE
PANTHER LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED UniProtKB/TrEMBL
  MEGALIN, ISOFORM A UniProtKB/TrEMBL
Pfam Ldl_recept_a UniProtKB/TrEMBL
PRINTS LDLRECEPTOR UniProtKB/TrEMBL
PROSITE LDLRA_1 UniProtKB/TrEMBL
  LDLRA_2 UniProtKB/TrEMBL
SMART LDLa UniProtKB/TrEMBL
Superfamily-SCOP SSF57424 UniProtKB/TrEMBL
UniProt A0A8C2URN7 ENTREZGENE, UniProtKB/TrEMBL