Cd320 (CD320 molecule) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Cd320 (CD320 molecule) Heterocephalus glaber
Analyze
Symbol: Cd320
Name: CD320 molecule
RGD ID: 18909615
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); cargo receptor activity (ortholog); cobalamin binding (ortholog); INVOLVED IN B cell costimulation (ortholog); cobalamin transport (ortholog); positive regulation of B cell proliferation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); familial hemophagocytic lymphohistiocytosis 5 (ortholog); methylmalonic acidemia due to transcobalamin receptor defect (ortholog); FOUND IN endoplasmic reticulum (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CD320 antigen
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248281,102,306 - 1,106,211 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248281,102,016 - 1,106,314 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cd320
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248281,102,306 - 1,106,211 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248281,102,016 - 1,106,314 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CD320
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38198,302,127 - 8,308,358 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl198,302,127 - 8,308,358 (-)EnsemblGRCh38hg38GRCh38
GRCh37198,367,011 - 8,373,242 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36198,273,011 - 8,279,239 (-)NCBINCBI36Build 36hg18NCBI36
Build 34198,273,010 - 8,279,239NCBI
Celera198,223,534 - 8,229,765 (-)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef198,021,040 - 8,027,272 (-)NCBIHuRef
CHM1_1198,366,510 - 8,372,742 (-)NCBICHM1_1
T2T-CHM13v2.0198,288,656 - 8,294,880 (-)NCBIT2T-CHM13v2.0
Cd320
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,062,065 - 34,068,748 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,062,065 - 34,068,748 (+)EnsemblGRCm39 Ensembl
GRCm381733,843,091 - 33,849,774 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1733,843,091 - 33,849,774 (+)EnsemblGRCm38mm10GRCm38
MGSCv371733,980,036 - 33,986,719 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361733,449,214 - 33,456,005 (+)NCBIMGSCv36mm8
Celera1736,600,303 - 36,608,793 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
Cd320
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8715,328,320 - 15,334,138 (+)NCBIGRCr8
mRatBN7.2714,626,171 - 14,631,976 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl714,609,146 - 14,631,976 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx717,634,732 - 17,640,527 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0719,500,017 - 19,505,812 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0717,380,359 - 17,386,154 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0718,700,445 - 18,706,244 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl718,700,344 - 18,706,244 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0718,878,058 - 18,883,844 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4716,338,136 - 16,343,892NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1716,338,135 - 16,343,892NCBI
Cytogenetic Map7q13NCBI
Cd320
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555631,084,474 - 1,093,111 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555631,084,523 - 1,089,395 (+)NCBIChiLan1.0ChiLan1.0
CD320
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22012,969,658 - 12,975,998 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11912,086,331 - 12,092,672 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0197,587,760 - 7,594,055 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1198,438,955 - 8,445,464 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl198,438,955 - 8,445,464 (-)Ensemblpanpan1.1panPan2
CD320
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12052,886,087 - 52,890,361 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2052,886,087 - 52,890,366 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2052,687,555 - 52,691,829 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02053,414,068 - 53,418,342 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2053,414,068 - 53,418,348 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12052,616,774 - 52,621,039 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02053,062,048 - 53,066,321 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02053,293,654 - 53,297,928 (-)NCBIUU_Cfam_GSD_1.0
Cd320
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118212,687,660 - 212,692,222 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365885,142,561 - 5,147,074 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365885,142,561 - 5,147,111 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD320
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl270,965,672 - 70,970,288 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1270,961,897 - 70,970,289 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CD320
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.167,666,201 - 7,673,088 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl67,665,895 - 7,673,599 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607412,617,008 - 12,624,955 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000018596   ⟹   ENSHGLP00000018412
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248281,102,306 - 1,106,211 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000018597   ⟹   ENSHGLP00000018413
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248281,102,306 - 1,105,462 (-)Ensembl
RefSeq Acc Id: XM_021245251   ⟹   XP_021100910
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248281,102,016 - 1,106,314 (-)NCBI
RefSeq Acc Id: XM_021245252   ⟹   XP_021100911
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248281,102,016 - 1,106,313 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021100910 (Get FASTA)   NCBI Sequence Viewer  
  XP_021100911 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000018412
RefSeq Acc Id: XP_021100910   ⟸   XM_021245251
- Peptide Label: isoform X1
- UniProtKB: A0AAX6RXT3 (UniProtKB/TrEMBL),   G5B4M4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021100911   ⟸   XM_021245252
- Peptide Label: isoform X2
- UniProtKB: A0AAX6RWM4 (UniProtKB/TrEMBL),   G5B4M4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000018413   ⟸   ENSHGLT00000018597
Ensembl Acc Id: ENSHGLP00000018412   ⟸   ENSHGLT00000018596


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013199 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000018596 ENTREZGENE
Gene3D-CATH Low-density Lipoprotein Receptor UniProtKB/TrEMBL
InterPro LDL_receptor-like_sf UniProtKB/TrEMBL
  LDLR UniProtKB/TrEMBL
  LDLR_class-A_CS UniProtKB/TrEMBL
  LDrepeatLR_classA_rpt UniProtKB/TrEMBL
NCBI Gene Cd320 ENTREZGENE
PANTHER CUB AND LDLA DOMAIN, ISOFORM A-RELATED UniProtKB/TrEMBL
  LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED UniProtKB/TrEMBL
Pfam Ldl_recept_a UniProtKB/TrEMBL
PRINTS LDLRECEPTOR UniProtKB/TrEMBL
PROSITE LDLRA_1 UniProtKB/TrEMBL
  LDLRA_2 UniProtKB/TrEMBL
SMART LDLa UniProtKB/TrEMBL
Superfamily-SCOP LDL receptor-like module UniProtKB/TrEMBL
UniProt A0AAX6RWM4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RXT3 ENTREZGENE, UniProtKB/TrEMBL
  G5B4M4 ENTREZGENE, UniProtKB/TrEMBL