Styxl2 (serine/threonine/tyrosine interacting like 2) - Rat Genome Database

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Gene: Styxl2 (serine/threonine/tyrosine interacting like 2) Chinchilla lanigera
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Symbol: Styxl2
Name: serine/threonine/tyrosine interacting like 2
RGD ID: 8741262
Description: ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dual specificity phosphatase 27 (putative); dual specificity phosphatase 27, atypical; Dusp27; inactive dual specificity phosphatase 27
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554629,791,747 - 9,836,987 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554629,792,135 - 9,836,927 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Styxl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554629,791,747 - 9,836,987 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554629,792,135 - 9,836,927 (-)NCBIChiLan1.0ChiLan1.0
STYXL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381167,094,075 - 167,129,165 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1167,094,075 - 167,129,165 (+)EnsemblGRCh38hg38GRCh38
GRCh371167,063,312 - 167,098,402 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,330,711 - 165,365,026 (+)NCBINCBI36Build 36hg18NCBI36
Celera1140,169,211 - 140,203,525 (+)NCBICelera
Cytogenetic Map1q24.1NCBI
HuRef1138,310,510 - 138,344,915 (+)NCBIHuRef
CHM1_11168,486,561 - 168,520,890 (+)NCBICHM1_1
T2T-CHM13v2.01166,441,246 - 166,476,239 (+)NCBIT2T-CHM13v2.0
Styxl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391165,925,717 - 165,955,467 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1165,925,717 - 165,955,491 (-)EnsemblGRCm39 Ensembl
GRCm381166,098,148 - 166,127,898 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1166,098,148 - 166,127,922 (-)EnsemblGRCm38mm10GRCm38
MGSCv371168,028,279 - 168,058,029 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361167,293,559 - 167,323,359 (-)NCBIMGSCv36mm8
MGSCv361167,934,828 - 167,964,573 (-)NCBIMGSCv36mm8
Celera1168,550,169 - 168,571,293 (-)NCBICelera
Cytogenetic Map1H2.3NCBI
cM Map173.45NCBI
Styxl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81380,882,341 - 80,911,458 (-)NCBIGRCr8
mRatBN7.21378,349,361 - 78,378,480 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1378,349,365 - 78,378,458 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1380,966,719 - 80,994,694 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01382,270,729 - 82,299,163 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01379,518,593 - 79,547,003 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01384,302,824 - 84,332,899 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1384,302,830 - 84,331,905 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01389,180,887 - 89,209,650 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41381,826,412 - 81,854,918 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1378,059,437 - 78,088,302 (-)NCBICelera
Cytogenetic Map13q23NCBI
STYXL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,645,166 - 82,681,059 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1182,313,444 - 82,349,376 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01142,515,889 - 142,551,807 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11146,301,600 - 146,336,497 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1146,301,600 - 146,336,497 (+)Ensemblpanpan1.1panPan2
STYXL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1731,241,169 - 31,273,103 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl731,242,731 - 31,273,050 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha730,781,186 - 30,811,957 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0731,063,789 - 31,094,547 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl731,063,789 - 31,094,514 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1730,902,301 - 30,933,026 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0730,934,078 - 30,964,854 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0731,172,570 - 31,203,360 (-)NCBIUU_Cfam_GSD_1.0
Styxl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344100,976,146 - 101,003,394 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648118,823,316 - 18,849,342 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648118,822,927 - 18,850,130 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STYXL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl483,871,436 - 83,902,292 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1483,871,434 - 83,902,313 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2491,545,602 - 91,576,474 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STYXL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12561,901,351 - 61,940,812 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2561,901,350 - 61,940,308 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605563,636,900 - 63,677,235 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Styxl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248265,187,257 - 5,226,278 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248265,184,908 - 5,226,790 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000008981   ⟹   ENSCLAP00000008853
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554629,791,747 - 9,836,987 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000008982   ⟹   ENSCLAP00000008854
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554629,792,659 - 9,836,154 (-)Ensembl
RefSeq Acc Id: XM_005398234   ⟹   XP_005398291
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554629,792,135 - 9,836,927 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005398291 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000008853
  ENSCLAP00000008853.1
  ENSCLAP00000008854.1
RefSeq Acc Id: XP_005398291   ⟸   XM_005398234
- UniProtKB: A0A8C2V1D9 (UniProtKB/TrEMBL),   A0A8C2V1D7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000008853   ⟸   ENSCLAT00000008981
Ensembl Acc Id: ENSCLAP00000008854   ⟸   ENSCLAT00000008982

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006188 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000008981 ENTREZGENE
  ENSCLAT00000008981.1 UniProtKB/TrEMBL
  ENSCLAT00000008982.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.190.10 UniProtKB/TrEMBL
InterPro Atypical_DUSP_subfamA UniProtKB/TrEMBL
  Dual-sp_phosphatase_cat-dom UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  Tyr_Pase_dom UniProtKB/TrEMBL
  TYR_PHOSPHATASE_DUAL_dom UniProtKB/TrEMBL
NCBI Gene Dusp27 ENTREZGENE
PANTHER PTHR45682 UniProtKB/TrEMBL
  SERINE/THREONINE/TYROSINE-INTERACTING-LIKE PROTEIN 2 UniProtKB/TrEMBL
Pfam DSPc UniProtKB/TrEMBL
PRINTS ADSPHPHTASE UniProtKB/TrEMBL
  ADSPHPHTASEA UniProtKB/TrEMBL
PROSITE TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_DUAL UniProtKB/TrEMBL
SMART DSPc UniProtKB/TrEMBL
Superfamily-SCOP SSF52799 UniProtKB/TrEMBL
UniProt A0A8C2V1D7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2V1D9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-09 Styxl2  serine/threonine/tyrosine interacting like 2  Dusp27  dual specificity phosphatase 27, atypical  Symbol and/or name change 5135510 APPROVED
2017-08-15 Dusp27  dual specificity phosphatase 27, atypical    dual specificity phosphatase 27 (putative)  Symbol and/or name change 5135510 APPROVED