Diaph2 (diaphanous related formin 2) - Rat Genome Database

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Gene: Diaph2 (diaphanous related formin 2) Chinchilla lanigera
Analyze
Symbol: Diaph2
Name: diaphanous related formin 2
RGD ID: 8736914
Description: ENCODES a protein that exhibits actin binding (ortholog); INVOLVED IN actin filament polymerization (ortholog); axon midline choice point recognition (ortholog); ephrin receptor signaling pathway (ortholog); ASSOCIATED WITH amenorrhea (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN endoplasmic reticulum (ortholog); intracellular membrane-bounded organelle (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: diaphanous-related formin 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555032,325,103 - 2,835,656 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555032,324,934 - 3,132,466 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Diaph2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555032,325,103 - 2,835,656 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555032,324,934 - 3,132,466 (+)NCBIChiLan1.0ChiLan1.0
DIAPH2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X96,684,842 - 97,604,997 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX96,684,712 - 97,604,997 (+)EnsemblGRCh38hg38GRCh38
GRCh37X95,939,841 - 96,859,996 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X95,826,365 - 96,746,652 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X95,745,855 - 96,666,137NCBI
CeleraX96,458,012 - 97,373,277 (+)NCBICelera
Cytogenetic MapXq21.33NCBI
HuRefX85,739,952 - 86,659,936 (+)NCBIHuRef
CHM1_1X95,832,371 - 96,748,951 (+)NCBICHM1_1
T2T-CHM13v2.0X95,124,162 - 96,044,467 (+)NCBIT2T-CHM13v2.0
Diaph2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X128,650,409 - 129,366,583 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX128,650,491 - 129,366,583 (+)EnsemblGRCm39 Ensembl
GRCm38X129,749,668 - 130,465,834 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX129,749,742 - 130,465,834 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X126,284,278 - 126,995,733 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X125,096,143 - 125,675,204 (+)NCBIMGSCv36mm8
CeleraX112,642,958 - 113,350,873 (+)NCBICelera
Cytogenetic MapXE3NCBI
cM MapX52.36NCBI
Diaph2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X96,700,535 - 97,528,080 (+)NCBIGRCr8
mRatBN7.2X92,395,189 - 93,234,521 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX92,395,251 - 93,229,869 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X99,722,910 - 100,363,228 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX99,852,198 - 100,057,439 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0X99,553,986 - 100,197,417 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X116,641,770 - 117,258,314 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX93,552,263 - 94,180,770 (+)NCBICelera
Cytogenetic MapXq31NCBI
DIAPH2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X96,304,030 - 97,225,531 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X96,307,680 - 97,224,783 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X85,916,356 - 86,837,858 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X96,067,252 - 96,979,830 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX96,066,870 - 96,979,462 (+)Ensemblpanpan1.1panPan2
DIAPH2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X69,994,674 - 71,044,178 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX69,994,650 - 71,043,198 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX60,804,704 - 61,857,429 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X71,343,583 - 72,392,960 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X69,016,716 - 70,066,386 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X70,624,006 - 71,673,290 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X70,255,069 - 71,304,928 (+)NCBIUU_Cfam_GSD_1.0
Diaph2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X66,474,564 - 67,266,088 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365842,287,288 - 3,076,788 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365842,286,919 - 3,081,652 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DIAPH2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX78,602,390 - 79,520,428 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X78,602,385 - 79,520,441 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X85,891,093 - 85,978,699 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DIAPH2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X85,130,928 - 86,035,944 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606510,174,929 - 10,906,218 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Diaph2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248513,291,888 - 4,329,285 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013505853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013505854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01064606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01064607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01064608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01064609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01064610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01064611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01064612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01064613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01064614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01064615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01064616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01064617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01064618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDI01105959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCLAT00000004410   ⟹   ENSCLAP00000004327
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555032,325,103 - 2,835,656 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000004411   ⟹   ENSCLAP00000004328
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555032,325,103 - 2,835,656 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000004412   ⟹   ENSCLAP00000004329
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555032,325,103 - 2,835,656 (+)Ensembl
RefSeq Acc Id: XM_013505853   ⟹   XP_013361307
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555032,324,934 - 3,071,521 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013505854   ⟹   XP_013361308
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555032,324,939 - 3,132,466 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013361307 (Get FASTA)   NCBI Sequence Viewer  
  XP_013361308 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000004327
  ENSCLAP00000004327.1
  ENSCLAP00000004328.1
  ENSCLAP00000004329.1
RefSeq Acc Id: XP_013361307   ⟸   XM_013505853
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UQF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013361308   ⟸   XM_013505854
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UQF0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000004328   ⟸   ENSCLAT00000004411
Ensembl Acc Id: ENSCLAP00000004329   ⟸   ENSCLAT00000004412
Ensembl Acc Id: ENSCLAP00000004327   ⟸   ENSCLAT00000004410
Protein Domains
FH2   GBD/FH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003080 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004410 ENTREZGENE
  ENSCLAT00000004410.1 UniProtKB/TrEMBL
  ENSCLAT00000004411.1 UniProtKB/TrEMBL
  ENSCLAT00000004412.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.40 UniProtKB/TrEMBL
  1.20.58.2220 UniProtKB/TrEMBL
  1.25.10.10 UniProtKB/TrEMBL
  6.10.30.30 UniProtKB/TrEMBL
  Formin, FH3 diaphanous domain UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  DIA_GBD_sf UniProtKB/TrEMBL
  FH2_Formin UniProtKB/TrEMBL
  FH2_Formin_sf UniProtKB/TrEMBL
  FH3_dom UniProtKB/TrEMBL
  Formin_Homology_Diaphanous_sf UniProtKB/TrEMBL
  GBD/FH3_dom UniProtKB/TrEMBL
  GTPase-bd UniProtKB/TrEMBL
NCBI Gene Diaph2 ENTREZGENE
PANTHER PROTEIN DIAPHANOUS UniProtKB/TrEMBL
  PTHR45691:SF3 UniProtKB/TrEMBL
Pfam Drf_FH3 UniProtKB/TrEMBL
  Drf_GBD UniProtKB/TrEMBL
  FH2 UniProtKB/TrEMBL
PROSITE FH2 UniProtKB/TrEMBL
  GBD_FH3 UniProtKB/TrEMBL
SMART Drf_FH3 UniProtKB/TrEMBL
  Drf_GBD UniProtKB/TrEMBL
  FH2 UniProtKB/TrEMBL
Superfamily-SCOP Formin homology 2 domain (FH2 domain) UniProtKB/TrEMBL
  SSF48371 UniProtKB/TrEMBL
UniProt A0A8C2UQF0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UQF3_CHILA UniProtKB/TrEMBL
  A0A8C2URX1_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Diaph2  diaphanous related formin 2    diaphanous-related formin 2  Symbol and/or name change 5135510 APPROVED