Ripor1 (RHO family interacting cell polarization regulator 1) - Rat Genome Database

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Gene: Ripor1 (RHO family interacting cell polarization regulator 1) Chinchilla lanigera
Analyze
Symbol: Ripor1
Name: RHO family interacting cell polarization regulator 1
RGD ID: 8736095
Description: ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); INVOLVED IN cellular response to chemokine (ortholog); cellular response to starvation (ortholog); establishment of Golgi localization (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN cell leading edge (ortholog); cytoplasm (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Fam65a; family with sequence similarity 65 member A; family with sequence similarity 65, member A
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554849,110,557 - 9,119,510 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554849,110,208 - 9,119,678 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Ripor1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554849,110,557 - 9,119,510 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554849,110,208 - 9,119,678 (-)NCBIChiLan1.0ChiLan1.0
RIPOR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,518,369 - 67,546,786 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,518,418 - 67,546,788 (+)EnsemblGRCh38hg38GRCh38
GRCh371667,562,732 - 67,580,689 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361666,120,255 - 66,138,190 (+)NCBINCBI36Build 36hg18NCBI36
Celera1652,070,951 - 52,088,932 (+)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,436,809 - 53,453,959 (+)NCBIHuRef
CHM1_11668,970,079 - 68,988,035 (+)NCBICHM1_1
T2T-CHM13v2.01673,323,597 - 73,341,553 (+)NCBIT2T-CHM13v2.0
Ripor1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,320,588 - 106,348,851 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,331,887 - 106,348,851 (+)EnsemblGRCm39 Ensembl
GRCm388105,594,087 - 105,622,219 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,605,255 - 105,622,219 (+)EnsemblGRCm38mm10GRCm38
MGSCv378108,129,129 - 108,146,119 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368108,483,080 - 108,518,110 (+)NCBIMGSCv36mm8
Celera8109,828,802 - 109,846,503 (+)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
Ripor1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,387,447 - 50,416,323 (+)NCBIGRCr8
mRatBN7.21933,477,750 - 33,506,424 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,477,793 - 33,506,420 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1940,305,282 - 40,322,008 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01940,958,612 - 40,975,338 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,256,325 - 43,273,034 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,555,940 - 37,584,842 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,568,113 - 37,587,294 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,424,412 - 48,452,711 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,438,485 - 35,446,556 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11935,443,365 - 35,451,436 (+)NCBI
Celera1932,917,984 - 32,934,712 (+)NCBICelera
Cytogenetic Map19q12NCBI
RIPOR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21877,057,019 - 77,075,026 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11682,969,653 - 82,987,662 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01647,872,769 - 47,890,776 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11667,250,502 - 67,278,768 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,268,180 - 67,278,445 (+)Ensemblpanpan1.1panPan2
RIPOR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,879,359 - 81,888,613 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,879,652 - 81,887,650 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha581,869,022 - 81,892,886 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0582,314,594 - 82,338,472 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,314,609 - 82,338,718 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1582,140,793 - 82,164,649 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0581,821,921 - 81,845,721 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,464,908 - 82,488,823 (-)NCBIUU_Cfam_GSD_1.0
Ripor1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,621,085 - 41,636,855 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647517,952,092 - 17,971,085 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647517,952,297 - 17,968,029 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RIPOR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,132,115 - 28,183,780 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1628,156,508 - 28,183,640 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2625,431,697 - 25,448,249 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RIPOR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1559,905,713 - 59,923,573 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl559,904,589 - 59,914,908 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604722,655,906 - 22,683,941 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ripor1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,772,930 - 18,792,217 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474618,773,092 - 18,792,182 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000023900   ⟹   ENSCLAP00000023675
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554849,110,557 - 9,119,510 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000023901   ⟹   ENSCLAP00000023676
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554849,110,557 - 9,119,179 (-)Ensembl
RefSeq Acc Id: XM_005403641   ⟹   XP_005403698
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554849,110,208 - 9,119,678 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005403698 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000023675
  ENSCLAP00000023675.1
  ENSCLAP00000023676.1
RefSeq Acc Id: XP_005403698   ⟸   XM_005403641
- UniProtKB: A0A8C2W3E7 (UniProtKB/TrEMBL),   A0A8C2W5Y6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000023675   ⟸   ENSCLAT00000023900
Ensembl Acc Id: ENSCLAP00000023676   ⟸   ENSCLAT00000023901
Protein Domains
FAM65 N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016244 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000023900 ENTREZGENE
  ENSCLAT00000023900.1 UniProtKB/TrEMBL
  ENSCLAT00000023901.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  FAM65_N UniProtKB/TrEMBL
  RIPOR3 UniProtKB/TrEMBL
NCBI Gene Fam65a ENTREZGENE
PANTHER PTHR15829 UniProtKB/TrEMBL
  RHO FAMILY-INTERACTING CELL POLARIZATION REGULATOR 1 UniProtKB/TrEMBL
Pfam PL48 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A8C2W3E7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2W5Y6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-02-28 Ripor1  RHO family interacting cell polarization regulator 1  Fam65a  family with sequence similarity 65 member A  Symbol and/or name change 5135510 APPROVED
2016-08-16 Fam65a  family with sequence similarity 65 member A    family with sequence similarity 65, member A  Symbol and/or name change 5135510 APPROVED