RIPOR1 (RHO family interacting cell polarization regulator 1) - Rat Genome Database

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Gene: RIPOR1 (RHO family interacting cell polarization regulator 1) Homo sapiens
Analyze
Symbol: RIPOR1
Name: RHO family interacting cell polarization regulator 1
RGD ID: 1606508
HGNC Page HGNC:25836
Description: Enables 14-3-3 protein binding activity. Involved in several processes, including establishment of Golgi localization; negative regulation of Rho guanyl-nucleotide exchange factor activity; and negative regulation of Rho protein signal transduction. Located in Golgi apparatus; cell leading edge; and membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FAM65A; family with sequence similarity 65 member A; family with sequence similarity 65, member A; FLJ13725; hypothetical protein LOC79567; KIAA1930; rho family-interacting cell polarization regulator 1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,518,369 - 67,546,786 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1667,518,418 - 67,546,788 (+)EnsemblGRCh38hg38GRCh38
GRCh371667,562,732 - 67,580,689 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361666,120,255 - 66,138,190 (+)NCBINCBI36Build 36hg18NCBI36
Celera1652,070,951 - 52,088,932 (+)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,436,809 - 53,453,959 (+)NCBIHuRef
CHM1_11668,970,079 - 68,988,035 (+)NCBICHM1_1
T2T-CHM13v2.01673,323,597 - 73,341,553 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11572484   PMID:12477932   PMID:14702039   PMID:15146197   PMID:15302935   PMID:18029348   PMID:19056867   PMID:19199708   PMID:21873635   PMID:21900206   PMID:22863883   PMID:23376485  
PMID:26673895   PMID:27173435   PMID:27807006   PMID:28611215   PMID:29117863   PMID:32513696   PMID:33961781   PMID:34315543   PMID:35256949   PMID:35439318   PMID:36215168  


Genomics

Comparative Map Data
RIPOR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,518,369 - 67,546,786 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1667,518,418 - 67,546,788 (+)EnsemblGRCh38hg38GRCh38
GRCh371667,562,732 - 67,580,689 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361666,120,255 - 66,138,190 (+)NCBINCBI36Build 36hg18NCBI36
Celera1652,070,951 - 52,088,932 (+)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,436,809 - 53,453,959 (+)NCBIHuRef
CHM1_11668,970,079 - 68,988,035 (+)NCBICHM1_1
T2T-CHM13v2.01673,323,597 - 73,341,553 (+)NCBIT2T-CHM13v2.0
Ripor1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,320,588 - 106,348,851 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,331,887 - 106,348,851 (+)EnsemblGRCm39 Ensembl
GRCm388105,594,087 - 105,622,219 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,605,255 - 105,622,219 (+)EnsemblGRCm38mm10GRCm38
MGSCv378108,129,129 - 108,146,119 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368108,483,080 - 108,518,110 (+)NCBIMGSCv36mm8
Celera8109,828,802 - 109,846,503 (+)NCBICelera
Cytogenetic Map8D3NCBI
Ripor1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21933,477,750 - 33,506,424 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,477,793 - 33,506,420 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1940,305,282 - 40,322,008 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01940,958,612 - 40,975,338 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01943,256,325 - 43,273,034 (+)NCBIRnor_WKY
Rnor_6.01937,555,940 - 37,584,842 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,568,113 - 37,587,294 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,424,412 - 48,452,711 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,438,485 - 35,446,556 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11935,443,365 - 35,451,436 (+)NCBI
Celera1932,917,984 - 32,934,712 (+)NCBICelera
Cytogenetic Map19q12NCBI
Ripor1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554849,110,557 - 9,119,510 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554849,110,208 - 9,119,678 (-)NCBIChiLan1.0ChiLan1.0
RIPOR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11682,969,653 - 82,987,662 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01647,872,769 - 47,890,776 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11667,250,502 - 67,278,768 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,268,180 - 67,278,445 (+)Ensemblpanpan1.1panPan2
RIPOR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,879,359 - 81,888,613 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,879,652 - 81,887,650 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha581,869,022 - 81,892,886 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0582,314,594 - 82,338,472 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,314,609 - 82,338,718 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1582,140,793 - 82,164,649 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0581,821,921 - 81,845,721 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,464,908 - 82,488,823 (-)NCBIUU_Cfam_GSD_1.0
Ripor1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,621,085 - 41,636,855 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647517,952,092 - 17,971,085 (+)EnsemblSpeTri2.0
SpeTri2.0NW_00493647517,952,297 - 17,968,029 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RIPOR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,132,115 - 28,183,780 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1628,156,508 - 28,183,640 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2625,431,697 - 25,448,249 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RIPOR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1559,905,713 - 59,923,573 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl559,904,589 - 59,914,908 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604722,655,906 - 22,683,941 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ripor1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,772,930 - 18,792,217 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474618,773,092 - 18,792,182 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RIPOR1
17 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 16q13-22.2(chr16:56883592-71279975)x3 copy number gain See cases [RCV000052405] Chr16:56883592..71279975 [GRCh38]
Chr16:56917504..71313878 [GRCh37]
Chr16:55475005..69871379 [NCBI36]
Chr16:16q13-22.2		 pathogenic
GRCh38/hg38 16q21-23.1(chr16:58456122-74708723)x3 copy number gain See cases [RCV000052408] Chr16:58456122..74708723 [GRCh38]
Chr16:58490026..74742621 [GRCh37]
Chr16:57047527..73300122 [NCBI36]
Chr16:16q21-23.1		 pathogenic
GRCh38/hg38 16q21-24.3(chr16:65313395-90081985)x3 copy number gain See cases [RCV000052421] Chr16:65313395..90081985 [GRCh38]
Chr16:65347298..90148393 [GRCh37]
Chr16:63904799..88675894 [NCBI36]
Chr16:16q21-24.3		 pathogenic
GRCh38/hg38 16q21-22.1(chr16:62179331-67770414)x1 copy number loss See cases [RCV000053333] Chr16:62179331..67770414 [GRCh38]
Chr16:62213235..67804317 [GRCh37]
Chr16:60770736..66361818 [NCBI36]
Chr16:16q21-22.1		 pathogenic
GRCh38/hg38 16q21-22.1(chr16:63318997-70555249)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053334]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053334]|See cases [RCV000053334] Chr16:63318997..70555249 [GRCh38]
Chr16:63352901..70589152 [GRCh37]
Chr16:61910402..69146653 [NCBI36]
Chr16:16q21-22.1		 pathogenic
GRCh38/hg38 16q21-22.1(chr16:64311275-68062011)x1 copy number loss See cases [RCV000053335] Chr16:64311275..68062011 [GRCh38]
Chr16:64345179..68095914 [GRCh37]
Chr16:62902680..66653415 [NCBI36]
Chr16:16q21-22.1		 pathogenic
GRCh38/hg38 16q22.1(chr16:66694180-67865445)x1 copy number loss See cases [RCV000053336] Chr16:66694180..67865445 [GRCh38]
Chr16:66728083..67899348 [GRCh37]
Chr16:65285584..66456849 [NCBI36]
Chr16:16q22.1		 pathogenic
GRCh38/hg38 16q21-24.1(chr16:62925929-84585795)x3 copy number gain See cases [RCV000135863] Chr16:62925929..84585795 [GRCh38]
Chr16:62959833..84619401 [GRCh37]
Chr16:61517334..83176902 [NCBI36]
Chr16:16q21-24.1		 pathogenic
GRCh38/hg38 16q21-24.3(chr16:65511483-90096995)x3 copy number gain See cases [RCV000139426] Chr16:65511483..90096995 [GRCh38]
Chr16:65545386..90163403 [GRCh37]
Chr16:64102887..88690904 [NCBI36]
Chr16:16q21-24.3		 pathogenic
GRCh38/hg38 16q21-24.3(chr16:64389378-90081985)x3 copy number gain See cases [RCV000142578] Chr16:64389378..90081985 [GRCh38]
Chr16:64423281..90148393 [GRCh37]
Chr16:62980782..88675894 [NCBI36]
Chr16:16q21-24.3		 pathogenic|likely pathogenic
GRCh38/hg38 16q12.2-24.3(chr16:52899183-90088654)x3 copy number gain See cases [RCV000143425] Chr16:52899183..90088654 [GRCh38]
Chr16:52933095..90155062 [GRCh37]
Chr16:51490596..88682563 [NCBI36]
Chr16:16q12.2-24.3		 pathogenic
GRCh38/hg38 16q12.1-22.1(chr16:49685521-68401712)x3 copy number gain See cases [RCV000143752] Chr16:49685521..68401712 [GRCh38]
Chr16:49719432..68435615 [GRCh37]
Chr16:48276933..66993116 [NCBI36]
Chr16:16q12.1-22.1		 pathogenic
GRCh38/hg38 16q21-23.3(chr16:65957829-83611443)x3 copy number gain See cases [RCV000143742] Chr16:65957829..83611443 [GRCh38]
Chr16:65991732..83645048 [GRCh37]
Chr16:64549233..82202549 [NCBI36]
Chr16:16q21-23.3		 pathogenic
GRCh37/hg19 16q11.2-24.3(chr16:46615804-90142285)x1 copy number loss Ductal breast carcinoma [RCV000207138] Chr16:46615804..90142285 [GRCh37]
Chr16:16q11.2-24.3		 uncertain significance
GRCh37/hg19 16q12.2-22.2(chr16:55359026-70884455)x1 copy number loss Ductal breast carcinoma [RCV000207067] Chr16:55359026..70884455 [GRCh37]
Chr16:16q12.2-22.2		 likely pathogenic|uncertain significance
Single allele complex Ductal breast carcinoma [RCV000207314] Chr16:56368689..90141355 [GRCh37]
Chr16:16q12.2-24.3		 uncertain significance
GRCh37/hg19 16q11.2-24.3(chr16:46464488-90155062)x3 copy number gain See cases [RCV000446110] Chr16:46464488..90155062 [GRCh37]
Chr16:16q11.2-24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:69193-90274381)x3 copy number gain See cases [RCV000446684] Chr16:69193..90274381 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.2-q24.3(chr16:9273328-89548493)x3 copy number gain See cases [RCV000511622] Chr16:9273328..89548493 [GRCh37]
Chr16:16p13.2-q24.3		 uncertain significance
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062)x3 copy number gain See cases [RCV000512138] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062) copy number gain See cases [RCV000511296] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16q11.2-24.3(chr16:46497599-90354753)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626429] Chr16:46497599..90354753 [GRCh37]
Chr16:16q11.2-24.3		 drug response
GRCh37/hg19 16q11.2-24.3(chr16:46455960-90354753)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626435] Chr16:46455960..90354753 [GRCh37]
Chr16:16q11.2-24.3		 drug response
GRCh37/hg19 16q13-24.3(chr16:57051473-89797669)x3 copy number gain See cases [RCV000512511] Chr16:57051473..89797669 [GRCh37]
Chr16:16q13-24.3		 pathogenic
GRCh37/hg19 16q12.2-22.2(chr16:54416050-72453266)x3 copy number gain not provided [RCV000683820] Chr16:54416050..72453266 [GRCh37]
Chr16:16q12.2-22.2		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90274695)x3 copy number gain not provided [RCV000738918] Chr16:88165..90274695 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:61451-90294632)x3 copy number gain not provided [RCV000738915] Chr16:61451..90294632 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90163275)x3 copy number gain not provided [RCV000738917] Chr16:88165..90163275 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16q22.1(chr16:67132790-68166320) copy number loss not provided [RCV000767617] Chr16:67132790..68166320 [GRCh37]
Chr16:16q22.1		 pathogenic
GRCh37/hg19 16q21-22.1(chr16:65669673-70180183)x1 copy number loss not provided [RCV001006797] Chr16:65669673..70180183 [GRCh37]
Chr16:16q21-22.1		 pathogenic
GRCh37/hg19 16q21-24.3(chr16:61524229-90155062)x3 copy number gain not provided [RCV001249359] Chr16:61524229..90155062 [GRCh37]
Chr16:16q21-24.3		 not provided
NM_024519.4(RIPOR1):c.2951C>T (p.Pro984Leu) single nucleotide variant not provided [RCV001356199] Chr16:67545037 [GRCh38]
Chr16:67578940 [GRCh37]
Chr16:16q22.1		 uncertain significance
NC_000016.9:g.(?_66545871)_(72146396_?)dup duplication Dyskeratosis congenita, autosomal dominant 6 [RCV001900384]|Immunodeficiency [RCV001900385]|not provided [RCV001900386] Chr16:66545871..72146396 [GRCh37]
Chr16:16q21-22.2		 uncertain significance
GRCh37/hg19 16q11.2-24.3(chr16:46503968-90155062)x3 copy number gain not provided [RCV002221458] Chr16:46503968..90155062 [GRCh37]
Chr16:16q11.2-24.3		 pathogenic
NC_000016.9:g.(?_65821800)_(72146396_?)del deletion Dyskeratosis congenita, autosomal dominant 6 [RCV003122496] Chr16:65821800..72146396 [GRCh37]
Chr16:16q21-22.2		 uncertain significance
NM_024519.4(RIPOR1):c.3395T>C (p.Leu1132Pro) single nucleotide variant Inborn genetic diseases [RCV003205866] Chr16:67545956 [GRCh38]
Chr16:67579859 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_024519.4(RIPOR1):c.610G>A (p.Glu204Lys) single nucleotide variant Inborn genetic diseases [RCV003202234] Chr16:67540342 [GRCh38]
Chr16:67574245 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_024519.4(RIPOR1):c.1907C>T (p.Ser636Leu) single nucleotide variant Inborn genetic diseases [RCV003210547] Chr16:67542693 [GRCh38]
Chr16:67576596 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_024519.4(RIPOR1):c.3163G>A (p.Ala1055Thr) single nucleotide variant Inborn genetic diseases [RCV003215749] Chr16:67545507 [GRCh38]
Chr16:67579410 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_024519.4(RIPOR1):c.482G>A (p.Arg161His) single nucleotide variant Inborn genetic diseases [RCV003183612] Chr16:67540120 [GRCh38]
Chr16:67574023 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_024519.4(RIPOR1):c.451C>T (p.Arg151Cys) single nucleotide variant Inborn genetic diseases [RCV003212245] Chr16:67540089 [GRCh38]
Chr16:67573992 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_024519.4(RIPOR1):c.171G>T (p.Arg57Ser) single nucleotide variant Inborn genetic diseases [RCV003198287] Chr16:67538738 [GRCh38]
Chr16:67572641 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_024519.4(RIPOR1):c.3439G>A (p.Val1147Met) single nucleotide variant Inborn genetic diseases [RCV003198702] Chr16:67546000 [GRCh38]
Chr16:67579903 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_024519.4(RIPOR1):c.2014A>C (p.Ile672Leu) single nucleotide variant Inborn genetic diseases [RCV003192779] Chr16:67542800 [GRCh38]
Chr16:67576703 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_024519.4(RIPOR1):c.2924C>G (p.Thr975Arg) single nucleotide variant Inborn genetic diseases [RCV003193380] Chr16:67545010 [GRCh38]
Chr16:67578913 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_024519.4(RIPOR1):c.3337G>A (p.Val1113Ile) single nucleotide variant Inborn genetic diseases [RCV003194371] Chr16:67545810 [GRCh38]
Chr16:67579713 [GRCh37]
Chr16:16q22.1		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:7557
Count of miRNA genes:1127
Interacting mature miRNAs:1442
Transcripts:ENST00000042381, ENST00000379312, ENST00000422602, ENST00000428437, ENST00000540839, ENST00000561534, ENST00000562116, ENST00000562755, ENST00000564616, ENST00000565176, ENST00000565190, ENST00000565679, ENST00000566522, ENST00000566559, ENST00000566730, ENST00000566815, ENST00000566907, ENST00000566920, ENST00000568959, ENST00000569179, ENST00000569253, ENST00000569474, ENST00000569733
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
STS-AA040937  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371667,580,461 - 67,580,638UniSTSGRCh37
Build 361666,137,962 - 66,138,139RGDNCBI36
Celera1652,088,702 - 52,088,879RGD
Cytogenetic Map16q22.1UniSTS
HuRef1653,453,729 - 53,453,906UniSTS
GeneMap99-GB4 RH Map16407.9UniSTS
NCBI RH Map16508.6UniSTS
RH102981  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371667,580,497 - 67,580,641UniSTSGRCh37
Build 361666,137,998 - 66,138,142RGDNCBI36
Celera1652,088,738 - 52,088,882RGD
Cytogenetic Map16q22.1UniSTS
HuRef1653,453,765 - 53,453,909UniSTS
GeneMap99-GB4 RH Map16403.49UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2336 2775 1463 370 1626 211 4144 2127 3512 402 1435 1593 175 1 1204 2739 4 2
Low 102 216 263 254 318 254 213 70 222 17 25 20 49 2
Below cutoff 1 6

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001193522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001193523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001193524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_024519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011523321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011523322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011523324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011523325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011523326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017023663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017023664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024450442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024450443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054313910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054313911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054313912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054313913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054313914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054313915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054313916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054313917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054313918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054313919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054313920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054313921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054313922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054313923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054313924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB067517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC027682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK023787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK097087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK127792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK293748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK295677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK302868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK307467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL834312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC001850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN401995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC310605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC422629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HI573872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000042381   ⟹   ENSP00000042381
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1667,528,829 - 67,546,786 (+)Ensembl
RefSeq Acc Id: ENST00000379312   ⟹   ENSP00000368614
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1667,528,817 - 67,546,786 (+)Ensembl
RefSeq Acc Id: ENST00000422602   ⟹   ENSP00000400099
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1667,529,727 - 67,546,637 (+)Ensembl
RefSeq Acc Id: ENST00000428437   ⟹   ENSP00000389456
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1667,537,454 - 67,546,788 (+)Ensembl
RefSeq Acc Id: ENST00000540839   ⟹   ENSP00000443568
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1667,528,881 - 67,546,786 (+)Ensembl
RefSeq Acc Id: ENST00000561534
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1667,538,965 - 67,541,578 (+)Ensembl
RefSeq Acc Id: ENST00000562116   ⟹   ENSP00000455239
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1667,518,418 - 67,538,471 (+)Ensembl
RefSeq Acc Id: ENST00000562755   ⟹   ENSP00000457739
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1667,528,288 - 67,539,021 (+)Ensembl
RefSeq Acc Id: ENST00000564616
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1667,542,999 - 67,543,826 (+)Ensembl
RefSeq Acc Id: ENST00000565176   ⟹   ENSP00000455795
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1667,531,548 - 67,540,094 (+)Ensembl
RefSeq Acc Id: ENST00000565190
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1667,545,372 - 67,546,067 (+)Ensembl
RefSeq Acc Id: ENST00000565679
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1667,545,537 - 67,546,005 (+)Ensembl
RefSeq Acc Id: ENST00000566522
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1667,528,867 - 67,540,704 (+)Ensembl
RefSeq Acc Id: ENST00000566559   ⟹   ENSP00000456893
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1667,538,078 - 67,542,668 (+)Ensembl
RefSeq Acc Id: ENST00000566730
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1667,540,125 - 67,541,577 (+)Ensembl
RefSeq Acc Id: ENST00000566815   ⟹   ENSP00000457419
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1667,538,464 - 67,541,578 (+)Ensembl
RefSeq Acc Id: ENST00000566907   ⟹   ENSP00000457888
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1667,529,347 - 67,538,544 (+)Ensembl
RefSeq Acc Id: ENST00000566920   ⟹   ENSP00000456525
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1667,529,791 - 67,538,996 (+)Ensembl
RefSeq Acc Id: ENST00000568959   ⟹   ENSP00000456924
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1667,544,394 - 67,545,797 (+)Ensembl
RefSeq Acc Id: ENST00000569179   ⟹   ENSP00000455200
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1667,540,353 - 67,541,713 (+)Ensembl
RefSeq Acc Id: ENST00000569253   ⟹   ENSP00000454376
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1667,537,473 - 67,542,665 (+)Ensembl
RefSeq Acc Id: ENST00000569474
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1667,539,865 - 67,541,758 (+)Ensembl
RefSeq Acc Id: ENST00000569733
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1667,541,347 - 67,546,786 (+)Ensembl
RefSeq Acc Id: NM_001193522   ⟹   NP_001180451
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,528,829 - 67,546,786 (+)NCBI
GRCh371667,562,717 - 67,580,691 (+)RGD
Celera1652,070,951 - 52,088,932 (+)RGD
HuRef1653,436,809 - 53,453,959 (+)RGD
CHM1_11668,970,082 - 68,988,035 (+)NCBI
T2T-CHM13v2.01673,323,597 - 73,341,553 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001193523   ⟹   NP_001180452
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,529,389 - 67,546,786 (+)NCBI
GRCh371667,562,717 - 67,580,691 (+)RGD
Celera1652,070,951 - 52,088,932 (+)RGD
HuRef1653,436,809 - 53,453,959 (+)RGD
CHM1_11668,970,902 - 68,988,035 (+)NCBI
T2T-CHM13v2.01673,324,157 - 73,341,553 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001193524   ⟹   NP_001180453
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,537,462 - 67,546,786 (+)NCBI
GRCh371667,562,717 - 67,580,691 (+)RGD
Celera1652,070,951 - 52,088,932 (+)RGD
HuRef1653,436,809 - 53,453,959 (+)RGD
CHM1_11668,978,709 - 68,988,035 (+)NCBI
T2T-CHM13v2.01673,332,229 - 73,341,553 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001410885   ⟹   NP_001397814
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,529,389 - 67,546,786 (+)NCBI
T2T-CHM13v2.01673,324,157 - 73,341,553 (+)NCBI
RefSeq Acc Id: NM_024519   ⟹   NP_078795
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,528,829 - 67,546,786 (+)NCBI
GRCh371667,562,717 - 67,580,691 (+)RGD
Build 361666,120,255 - 66,138,190 (+)NCBI Archive
Celera1652,070,951 - 52,088,932 (+)RGD
HuRef1653,436,809 - 53,453,959 (+)RGD
CHM1_11668,970,079 - 68,988,035 (+)NCBI
T2T-CHM13v2.01673,323,597 - 73,341,553 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011523321   ⟹   XP_011521623
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,529,389 - 67,546,786 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011523322   ⟹   XP_011521624
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,530,601 - 67,546,786 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011523324   ⟹   XP_011521626
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,537,462 - 67,546,786 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011523325   ⟹   XP_011521627
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,528,829 - 67,546,786 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047434616   ⟹   XP_047290572
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,529,389 - 67,546,786 (+)NCBI
RefSeq Acc Id: XM_047434617   ⟹   XP_047290573
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,530,601 - 67,546,786 (+)NCBI
RefSeq Acc Id: XM_047434618   ⟹   XP_047290574
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,529,389 - 67,546,786 (+)NCBI
RefSeq Acc Id: XM_047434619   ⟹   XP_047290575
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,537,462 - 67,546,786 (+)NCBI
RefSeq Acc Id: XM_047434620   ⟹   XP_047290576
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,529,389 - 67,546,786 (+)NCBI
RefSeq Acc Id: XM_047434621   ⟹   XP_047290577
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,529,389 - 67,546,786 (+)NCBI
RefSeq Acc Id: XM_047434622   ⟹   XP_047290578
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,530,601 - 67,546,786 (+)NCBI
RefSeq Acc Id: XM_047434624   ⟹   XP_047290580
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,537,462 - 67,546,786 (+)NCBI
RefSeq Acc Id: XM_047434625   ⟹   XP_047290581
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,537,462 - 67,546,786 (+)NCBI
RefSeq Acc Id: XM_047434626   ⟹   XP_047290582
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,528,829 - 67,546,786 (+)NCBI
RefSeq Acc Id: XM_047434627   ⟹   XP_047290583
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,528,829 - 67,546,786 (+)NCBI
RefSeq Acc Id: XM_047434628   ⟹   XP_047290584
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,518,369 - 67,546,786 (+)NCBI
RefSeq Acc Id: XM_047434629   ⟹   XP_047290585
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,528,829 - 67,546,786 (+)NCBI
RefSeq Acc Id: XM_047434630   ⟹   XP_047290586
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,528,829 - 67,546,786 (+)NCBI
RefSeq Acc Id: XM_054313910   ⟹   XP_054169885
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,324,157 - 73,341,553 (+)NCBI
RefSeq Acc Id: XM_054313911   ⟹   XP_054169886
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,324,157 - 73,341,553 (+)NCBI
RefSeq Acc Id: XM_054313912   ⟹   XP_054169887
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,324,157 - 73,341,553 (+)NCBI
RefSeq Acc Id: XM_054313913   ⟹   XP_054169888
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,325,114 - 73,341,553 (+)NCBI
RefSeq Acc Id: XM_054313914   ⟹   XP_054169889
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,332,229 - 73,341,553 (+)NCBI
RefSeq Acc Id: XM_054313915   ⟹   XP_054169890
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,324,157 - 73,341,553 (+)NCBI
RefSeq Acc Id: XM_054313916   ⟹   XP_054169891
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,324,157 - 73,341,553 (+)NCBI
RefSeq Acc Id: XM_054313917   ⟹   XP_054169892
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,332,229 - 73,341,553 (+)NCBI
RefSeq Acc Id: XM_054313918   ⟹   XP_054169893
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,325,117 - 73,341,553 (+)NCBI
RefSeq Acc Id: XM_054313919   ⟹   XP_054169894
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,332,229 - 73,341,553 (+)NCBI
RefSeq Acc Id: XM_054313920   ⟹   XP_054169895
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,332,229 - 73,341,553 (+)NCBI
RefSeq Acc Id: XM_054313921   ⟹   XP_054169896
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,323,597 - 73,341,553 (+)NCBI
RefSeq Acc Id: XM_054313922   ⟹   XP_054169897
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,323,597 - 73,341,553 (+)NCBI
RefSeq Acc Id: XM_054313923   ⟹   XP_054169898
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,323,597 - 73,341,553 (+)NCBI
RefSeq Acc Id: XM_054313924   ⟹   XP_054169899
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,323,597 - 73,341,553 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001180451 (Get FASTA)   NCBI Sequence Viewer  
  NP_001180452 (Get FASTA)   NCBI Sequence Viewer  
  NP_001180453 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397814 (Get FASTA)   NCBI Sequence Viewer  
  NP_078795 (Get FASTA)   NCBI Sequence Viewer  
  XP_011521623 (Get FASTA)   NCBI Sequence Viewer  
  XP_011521624 (Get FASTA)   NCBI Sequence Viewer  
  XP_011521626 (Get FASTA)   NCBI Sequence Viewer  
  XP_011521627 (Get FASTA)   NCBI Sequence Viewer  
  XP_047290572 (Get FASTA)   NCBI Sequence Viewer  
  XP_047290573 (Get FASTA)   NCBI Sequence Viewer  
  XP_047290574 (Get FASTA)   NCBI Sequence Viewer  
  XP_047290575 (Get FASTA)   NCBI Sequence Viewer  
  XP_047290576 (Get FASTA)   NCBI Sequence Viewer  
  XP_047290577 (Get FASTA)   NCBI Sequence Viewer  
  XP_047290578 (Get FASTA)   NCBI Sequence Viewer  
  XP_047290580 (Get FASTA)   NCBI Sequence Viewer  
  XP_047290581 (Get FASTA)   NCBI Sequence Viewer  
  XP_047290582 (Get FASTA)   NCBI Sequence Viewer  
  XP_047290583 (Get FASTA)   NCBI Sequence Viewer  
  XP_047290584 (Get FASTA)   NCBI Sequence Viewer  
  XP_047290585 (Get FASTA)   NCBI Sequence Viewer  
  XP_047290586 (Get FASTA)   NCBI Sequence Viewer  
  XP_054169885 (Get FASTA)   NCBI Sequence Viewer  
  XP_054169886 (Get FASTA)   NCBI Sequence Viewer  
  XP_054169887 (Get FASTA)   NCBI Sequence Viewer  
  XP_054169888 (Get FASTA)   NCBI Sequence Viewer  
  XP_054169889 (Get FASTA)   NCBI Sequence Viewer  
  XP_054169890 (Get FASTA)   NCBI Sequence Viewer  
  XP_054169891 (Get FASTA)   NCBI Sequence Viewer  
  XP_054169892 (Get FASTA)   NCBI Sequence Viewer  
  XP_054169893 (Get FASTA)   NCBI Sequence Viewer  
  XP_054169894 (Get FASTA)   NCBI Sequence Viewer  
  XP_054169895 (Get FASTA)   NCBI Sequence Viewer  
  XP_054169896 (Get FASTA)   NCBI Sequence Viewer  
  XP_054169897 (Get FASTA)   NCBI Sequence Viewer  
  XP_054169898 (Get FASTA)   NCBI Sequence Viewer  
  XP_054169899 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH01850 (Get FASTA)   NCBI Sequence Viewer  
  AAH54512 (Get FASTA)   NCBI Sequence Viewer  
  AAH98587 (Get FASTA)   NCBI Sequence Viewer  
  BAB14678 (Get FASTA)   NCBI Sequence Viewer  
  BAB67823 (Get FASTA)   NCBI Sequence Viewer  
  BAC87139 (Get FASTA)   NCBI Sequence Viewer  
  BAG57170 (Get FASTA)   NCBI Sequence Viewer  
  BAG58534 (Get FASTA)   NCBI Sequence Viewer  
  BAG64050 (Get FASTA)   NCBI Sequence Viewer  
  CAD38982 (Get FASTA)   NCBI Sequence Viewer  
  CBX47425 (Get FASTA)   NCBI Sequence Viewer  
  EAW83138 (Get FASTA)   NCBI Sequence Viewer  
  EAW83139 (Get FASTA)   NCBI Sequence Viewer  
  EAW83140 (Get FASTA)   NCBI Sequence Viewer  
  EAW83141 (Get FASTA)   NCBI Sequence Viewer  
  Q6ZS17 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001180452   ⟸   NM_001193523
- Peptide Label: isoform 3
- UniProtKB: Q6ZS17 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001180453   ⟸   NM_001193524
- Peptide Label: isoform 4
- UniProtKB: Q6ZS17 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001180451   ⟸   NM_001193522
- Peptide Label: isoform 2
- UniProtKB: Q9H8D9 (UniProtKB/Swiss-Prot),   Q6ZS17 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_078795   ⟸   NM_024519
- Peptide Label: isoform 1
- UniProtKB: Q6ZS17 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011521627   ⟸   XM_011523325
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_011521623   ⟸   XM_011523321
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011521624   ⟸   XM_011523322
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011521626   ⟸   XM_011523324
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: ENSP00000042381   ⟸   ENST00000042381
RefSeq Acc Id: ENSP00000389456   ⟸   ENST00000428437
RefSeq Acc Id: ENSP00000368614   ⟸   ENST00000379312
RefSeq Acc Id: ENSP00000455239   ⟸   ENST00000562116
RefSeq Acc Id: ENSP00000457739   ⟸   ENST00000562755
RefSeq Acc Id: ENSP00000455795   ⟸   ENST00000565176
RefSeq Acc Id: ENSP00000456893   ⟸   ENST00000566559
RefSeq Acc Id: ENSP00000456525   ⟸   ENST00000566920
RefSeq Acc Id: ENSP00000457888   ⟸   ENST00000566907
RefSeq Acc Id: ENSP00000457419   ⟸   ENST00000566815
RefSeq Acc Id: ENSP00000400099   ⟸   ENST00000422602
RefSeq Acc Id: ENSP00000456924   ⟸   ENST00000568959
RefSeq Acc Id: ENSP00000454376   ⟸   ENST00000569253
RefSeq Acc Id: ENSP00000455200   ⟸   ENST00000569179
RefSeq Acc Id: ENSP00000443568   ⟸   ENST00000540839
RefSeq Acc Id: XP_047290584   ⟸   XM_047434628
- Peptide Label: isoform X13
RefSeq Acc Id: XP_047290583   ⟸   XM_047434627
- Peptide Label: isoform X13
RefSeq Acc Id: XP_047290582   ⟸   XM_047434626
- Peptide Label: isoform X13
RefSeq Acc Id: XP_047290585   ⟸   XM_047434629
- Peptide Label: isoform X15
RefSeq Acc Id: XP_047290586   ⟸   XM_047434630
- Peptide Label: isoform X16
RefSeq Acc Id: XP_047290572   ⟸   XM_047434616
- Peptide Label: isoform X1
RefSeq Acc Id: XP_047290574   ⟸   XM_047434618
- Peptide Label: isoform X3
RefSeq Acc Id: XP_047290576   ⟸   XM_047434620
- Peptide Label: isoform X7
RefSeq Acc Id: XP_047290577   ⟸   XM_047434621
- Peptide Label: isoform X8
RefSeq Acc Id: XP_047290573   ⟸   XM_047434617
- Peptide Label: isoform X2
RefSeq Acc Id: XP_047290578   ⟸   XM_047434622
- Peptide Label: isoform X10
RefSeq Acc Id: XP_047290575   ⟸   XM_047434619
- Peptide Label: isoform X6
RefSeq Acc Id: XP_047290580   ⟸   XM_047434624
- Peptide Label: isoform X11
RefSeq Acc Id: XP_047290581   ⟸   XM_047434625
- Peptide Label: isoform X12
RefSeq Acc Id: NP_001397814   ⟸   NM_001410885
- Peptide Label: isoform 5
- UniProtKB: A0A0A0MTL6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054169896   ⟸   XM_054313921
- Peptide Label: isoform X13
RefSeq Acc Id: XP_054169898   ⟸   XM_054313923
- Peptide Label: isoform X15
RefSeq Acc Id: XP_054169897   ⟸   XM_054313922
- Peptide Label: isoform X14
RefSeq Acc Id: XP_054169899   ⟸   XM_054313924
- Peptide Label: isoform X16
RefSeq Acc Id: XP_054169885   ⟸   XM_054313910
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054169886   ⟸   XM_054313911
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054169890   ⟸   XM_054313915
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054169891   ⟸   XM_054313916
- Peptide Label: isoform X8
RefSeq Acc Id: XP_054169887   ⟸   XM_054313912
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054169888   ⟸   XM_054313913
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054169893   ⟸   XM_054313918
- Peptide Label: isoform X10
RefSeq Acc Id: XP_054169889   ⟸   XM_054313914
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054169894   ⟸   XM_054313919
- Peptide Label: isoform X11
RefSeq Acc Id: XP_054169892   ⟸   XM_054313917
- Peptide Label: isoform X9
RefSeq Acc Id: XP_054169895   ⟸   XM_054313920
- Peptide Label: isoform X12
Protein Domains
FAM65 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6ZS17-F1-model_v2 AlphaFold Q6ZS17 1-1223 view protein structure

Promoters
RGD ID:6793126
Promoter ID:HG_KWN:24040
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_024519,   OTTHUMT00000268866,   UC010CEI.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361666,120,071 - 66,120,571 (+)MPROMDB
RGD ID:6810922
Promoter ID:HG_ACW:31148
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   K562,   Lymphoblastoid
Transcripts:FAM65A.AAPR07
Position:
Human AssemblyChrPosition (strand)Source
Build 361666,121,361 - 66,121,861 (+)MPROMDB
RGD ID:6793108
Promoter ID:HG_KWN:24041
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   K562,   Lymphoblastoid
Transcripts:UC002ETI.1,   UC002ETJ.1,   UC002ETK.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361666,128,021 - 66,129,867 (+)MPROMDB
RGD ID:6810934
Promoter ID:HG_ACW:31152
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:FAM65A.MAPR07,   LARRY.BAPR07
Position:
Human AssemblyChrPosition (strand)Source
Build 361666,131,279 - 66,131,779 (+)MPROMDB
RGD ID:6810924
Promoter ID:HG_ACW:31153
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:FAM65A.PAPR07-UNSPLICED
Position:
Human AssemblyChrPosition (strand)Source
Build 361666,131,961 - 66,132,461 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:25836 AgrOrtholog
COSMIC RIPOR1 COSMIC
Ensembl Genes ENSG00000039523 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000042381 ENTREZGENE
  ENSP00000042381.4 UniProtKB/Swiss-Prot
  ENSP00000368614 ENTREZGENE
  ENSP00000368614.3 UniProtKB/Swiss-Prot
  ENSP00000389456 ENTREZGENE
  ENSP00000389456.2 UniProtKB/Swiss-Prot
  ENSP00000400099 ENTREZGENE
  ENSP00000400099.2 UniProtKB/Swiss-Prot
  ENSP00000443568.3 UniProtKB/TrEMBL
  ENSP00000454376.1 UniProtKB/TrEMBL
  ENSP00000455200.1 UniProtKB/TrEMBL
  ENSP00000455239.1 UniProtKB/TrEMBL
  ENSP00000455795.2 UniProtKB/TrEMBL
  ENSP00000456525.2 UniProtKB/TrEMBL
  ENSP00000456893.1 UniProtKB/TrEMBL
  ENSP00000456924.1 UniProtKB/TrEMBL
  ENSP00000457419.1 UniProtKB/TrEMBL
  ENSP00000457739.1 UniProtKB/TrEMBL
  ENSP00000457888.1 UniProtKB/TrEMBL
Ensembl Transcript ENST00000042381 ENTREZGENE
  ENST00000042381.9 UniProtKB/Swiss-Prot
  ENST00000379312 ENTREZGENE
  ENST00000379312.7 UniProtKB/Swiss-Prot
  ENST00000422602 ENTREZGENE
  ENST00000422602.8 UniProtKB/Swiss-Prot
  ENST00000428437 ENTREZGENE
  ENST00000428437.6 UniProtKB/Swiss-Prot
  ENST00000540839.7 UniProtKB/TrEMBL
  ENST00000562116.1 UniProtKB/TrEMBL
  ENST00000562755.5 UniProtKB/TrEMBL
  ENST00000565176.5 UniProtKB/TrEMBL
  ENST00000566559.5 UniProtKB/TrEMBL
  ENST00000566815.5 UniProtKB/TrEMBL
  ENST00000566907.1 UniProtKB/TrEMBL
  ENST00000566920.5 UniProtKB/TrEMBL
  ENST00000568959.1 UniProtKB/TrEMBL
  ENST00000569179.1 UniProtKB/TrEMBL
  ENST00000569253.5 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000039523 GTEx
HGNC ID HGNC:25836 ENTREZGENE
Human Proteome Map RIPOR1 Human Proteome Map
InterPro ARM-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FAM65_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RIPOR3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:79567 UniProtKB/Swiss-Prot
NCBI Gene 79567 ENTREZGENE
OMIM 619842 OMIM
PANTHER PTHR15829 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHO FAMILY-INTERACTING CELL POLARIZATION REGULATOR 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PL48 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA142671875 PharmGKB
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A0MTL6 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JLA4_HUMAN UniProtKB/TrEMBL
  H3BMG9_HUMAN UniProtKB/TrEMBL
  H3BP86_HUMAN UniProtKB/TrEMBL
  H3BQI5_HUMAN UniProtKB/TrEMBL
  H3BS40_HUMAN UniProtKB/TrEMBL
  H3BSV5_HUMAN UniProtKB/TrEMBL
  H3BSX9_HUMAN UniProtKB/TrEMBL
  H3BU12_HUMAN UniProtKB/TrEMBL
  H3BUP6_HUMAN UniProtKB/TrEMBL
  H3BV02_HUMAN UniProtKB/TrEMBL
  Q6ZS17 ENTREZGENE
  Q9H8D9 ENTREZGENE
  RIPR1_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary B4DEQ9 UniProtKB/Swiss-Prot
  B4DIM2 UniProtKB/Swiss-Prot
  E9PBS3 UniProtKB/Swiss-Prot
  Q4G0A4 UniProtKB/Swiss-Prot
  Q7Z5R7 UniProtKB/Swiss-Prot
  Q8NDA4 UniProtKB/Swiss-Prot
  Q96J39 UniProtKB/Swiss-Prot
  Q96PV8 UniProtKB/Swiss-Prot
  Q9H8D9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-02-28 RIPOR1  RHO family interacting cell polarization regulator 1  FAM65A  family with sequence similarity 65 member A  Symbol and/or name change 5135510 APPROVED
2015-11-24 FAM65A  family with sequence similarity 65 member A    family with sequence similarity 65, member A  Symbol and/or name change 5135510 APPROVED