Ripor1 (RHO family interacting cell polarization regulator 1) - Rat Genome Database

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Gene: Ripor1 (RHO family interacting cell polarization regulator 1) Mus musculus
Analyze
Symbol: Ripor1
Name: RHO family interacting cell polarization regulator 1
RGD ID: 1332090
MGI Page MGI
Description: Predicted to enable 14-3-3 protein binding activity. Predicted to be involved in several processes, including establishment of Golgi localization; negative regulation of Rho guanyl-nucleotide exchange factor activity; and negative regulation of Rho protein signal transduction. Located in cytoplasm. Is expressed in several structures, including adrenal gland; genitourinary system; hemolymphoid system; liver; and lung. Orthologous to human RIPOR1 (RHO family interacting cell polarization regulator 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310066E14Rik; AI837433; Fam6; Fam65a; family with sequence similarity 65, member A; hypothetical protein LOC75687; MGC100216; rho family-interacting cell polarization regulator 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,320,588 - 106,348,851 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,331,887 - 106,348,851 (+)EnsemblGRCm39 Ensembl
GRCm388105,594,087 - 105,622,219 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,605,255 - 105,622,219 (+)EnsemblGRCm38mm10GRCm38
MGSCv378108,129,129 - 108,146,119 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368108,483,080 - 108,518,110 (+)NCBIMGSCv36mm8
Celera8109,828,802 - 109,846,503 (+)NCBICelera
Cytogenetic Map8D3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cell leading edge  (ISO)
cytoplasm  (IBA,IDA,ISO)
Golgi apparatus  (ISO)
membrane  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12693553   PMID:14610273   PMID:15345681   PMID:15537664   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:17251388   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:32325033  


Genomics

Comparative Map Data
Ripor1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,320,588 - 106,348,851 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,331,887 - 106,348,851 (+)EnsemblGRCm39 Ensembl
GRCm388105,594,087 - 105,622,219 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,605,255 - 105,622,219 (+)EnsemblGRCm38mm10GRCm38
MGSCv378108,129,129 - 108,146,119 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368108,483,080 - 108,518,110 (+)NCBIMGSCv36mm8
Celera8109,828,802 - 109,846,503 (+)NCBICelera
Cytogenetic Map8D3NCBI
RIPOR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,518,369 - 67,546,786 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1667,518,418 - 67,546,788 (+)EnsemblGRCh38hg38GRCh38
GRCh371667,562,732 - 67,580,689 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361666,120,255 - 66,138,190 (+)NCBINCBI36Build 36hg18NCBI36
Celera1652,070,951 - 52,088,932 (+)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,436,809 - 53,453,959 (+)NCBIHuRef
CHM1_11668,970,079 - 68,988,035 (+)NCBICHM1_1
T2T-CHM13v2.01673,323,597 - 73,341,553 (+)NCBIT2T-CHM13v2.0
Ripor1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21933,477,750 - 33,506,424 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,477,793 - 33,506,420 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1940,305,282 - 40,322,008 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01940,958,612 - 40,975,338 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01943,256,325 - 43,273,034 (+)NCBIRnor_WKY
Rnor_6.01937,555,940 - 37,584,842 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,568,113 - 37,587,294 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,424,412 - 48,452,711 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,438,485 - 35,446,556 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11935,443,365 - 35,451,436 (+)NCBI
Celera1932,917,984 - 32,934,712 (+)NCBICelera
Cytogenetic Map19q12NCBI
Ripor1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554849,110,557 - 9,119,510 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554849,110,208 - 9,119,678 (-)NCBIChiLan1.0ChiLan1.0
RIPOR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11682,969,653 - 82,987,662 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01647,872,769 - 47,890,776 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11667,250,502 - 67,278,768 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,268,180 - 67,278,445 (+)Ensemblpanpan1.1panPan2
RIPOR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,879,359 - 81,888,613 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,879,652 - 81,887,650 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha581,869,022 - 81,892,886 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0582,314,594 - 82,338,472 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,314,609 - 82,338,718 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1582,140,793 - 82,164,649 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0581,821,921 - 81,845,721 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,464,908 - 82,488,823 (-)NCBIUU_Cfam_GSD_1.0
Ripor1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,621,085 - 41,636,855 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647517,952,092 - 17,971,085 (+)EnsemblSpeTri2.0
SpeTri2.0NW_00493647517,952,297 - 17,968,029 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RIPOR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,132,115 - 28,183,780 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1628,156,508 - 28,183,640 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2625,431,697 - 25,448,249 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RIPOR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1559,905,713 - 59,923,573 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl559,904,589 - 59,914,908 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604722,655,906 - 22,683,941 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ripor1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,772,930 - 18,792,217 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474618,773,092 - 18,792,182 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ripor1
562 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:169
Count of miRNA genes:145
Interacting mature miRNAs:156
Transcripts:ENSMUST00000043531
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873929123107929226Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined876402145110402251Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined876411976110412125Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined876411976110412125Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined876411976110412125Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined879245241113245331Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879808806113809031Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881819296115819296Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)882345783116345783Mouse
1301766Desp1_mdespair 1 (mouse)Not determined885486208119486373Mouse
1302049Heal1_mwound healing/regeneration 1 (mouse)Not determined886443553120443701Mouse
1301253Skmw2_mskeletal muscle weight 2 (mouse)Not determined886443553120443701Mouse
10045619Heal14_mwound healing/regeneration 14 (mouse)Not determined886443553120443701Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889726628130027694Mouse
1357494Obsty2_mobesity 2 (mouse)Not determined896245241129745061Mouse
12880431Fgf23lq2_mFGF23 serum level QTL 2 (mouse)897626632130127694Mouse
11252141Fdr2_mfat response to dietary restriction 2 (mouse)898390634130127694Mouse
1301481Lith11_mlithogenic gene 11 (mouse)Not determined898563635130127694Mouse
1302105Im1_mImmunoregulatory 1 (mouse)Not determined899828531130127694Mouse
1301080Sluc9_msusceptibility to lung cancer 9 (mouse)Not determined899828531130127694Mouse
4141435Fbtq3_mfemoral bone trait QTL 3 (mouse)Not determined8100965309130127694Mouse
1300560Tgl1_mtriglyceride level 1 (mouse)Not determined8102486208111650036Mouse
1300681Pgia22_mproteoglycan induced arthritis 22 (mouse)Not determined8102486208116025457Mouse
1301316Dntcs1_mdental caries susceptibility 1 (mouse)Not determined8103443553127781786Mouse
11532691Sluc38_msusceptibility to lung cancer 38 (mouse)8105033977130127694Mouse
11532692Sluc38a_msusceptibility to lung cancer 38a (mouse)8105033977130127694Mouse

Markers in Region
AI303678  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388105,624,499 - 105,624,623UniSTSGRCm38
MGSCv378108,148,399 - 108,148,523UniSTSGRCm37
Celera8109,848,783 - 109,848,907UniSTS
Cytogenetic Map8D3UniSTS
Whitehead/MRC_RH81228.79UniSTS
46.MMHAP70FLH4.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388105,625,224 - 105,625,342UniSTSGRCm38
MGSCv378108,149,124 - 108,149,242UniSTSGRCm37
Celera8109,849,508 - 109,849,626UniSTS
Cytogenetic Map8D3UniSTS
Whitehead_YAC1 UniSTS
AI837433  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388105,621,901 - 105,622,010UniSTSGRCm38
MGSCv378108,145,801 - 108,145,910UniSTSGRCm37
Celera8109,846,185 - 109,846,294UniSTS
Cytogenetic Map8D3UniSTS
Whitehead/MRC_RH81243.16UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001081241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006531461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006531463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC127419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB852730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000043531   ⟹   ENSMUSP00000039966
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8106,331,887 - 106,348,851 (+)Ensembl
GRCm38.p6 Ensembl8105,605,255 - 105,622,219 (+)Ensembl
RefSeq Acc Id: NM_001081241   ⟹   NP_001074710
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398106,331,861 - 106,348,851 (+)NCBI
GRCm388105,605,229 - 105,622,219 (+)NCBI
MGSCv378108,129,129 - 108,146,119 (+)RGD
Celera8109,828,802 - 109,846,503 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006531461   ⟹   XP_006531524
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398106,331,873 - 106,348,851 (+)NCBI
GRCm388105,603,755 - 105,622,219 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006531463   ⟹   XP_006531526
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398106,331,878 - 106,348,851 (+)NCBI
GRCm388105,605,246 - 105,622,219 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011248531   ⟹   XP_011246833
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398106,320,588 - 106,348,851 (+)NCBI
GRCm388105,594,087 - 105,622,219 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011248532   ⟹   XP_011246834
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398106,320,588 - 106,348,851 (+)NCBI
GRCm388105,594,087 - 105,622,206 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243830   ⟹   XP_030099690
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398106,342,060 - 106,348,851 (+)NCBI
GRCm388105,615,428 - 105,622,219 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036154351   ⟹   XP_036010244
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398106,331,653 - 106,348,851 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036154352   ⟹   XP_036010245
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398106,320,588 - 106,346,370 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001074710   ⟸   NM_001081241
- UniProtKB: Q9D6R4 (UniProtKB/Swiss-Prot),   Q68FE6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006531526   ⟸   XM_006531463
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006531524   ⟸   XM_006531461
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011246833   ⟸   XM_011248531
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011246834   ⟸   XM_011248532
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030099690   ⟸   XM_030243830
- Peptide Label: isoform X7
RefSeq Acc Id: ENSMUSP00000039966   ⟸   ENSMUST00000043531
RefSeq Acc Id: XP_036010245   ⟸   XM_036154352
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036010244   ⟸   XM_036154351
- Peptide Label: isoform X4
- UniProtKB: Q9D6R4 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q68FE6-F1-model_v2 AlphaFold Q68FE6 1-1223 view protein structure

Promoters
RGD ID:8668105
Promoter ID:EPDNEW_M12083
Type:initiation region
Name:Ripor1_1
Description:Mus musculus RHO family interacting cell polarization regulator1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M12084  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm388105,605,268 - 105,605,328EPDNEW
RGD ID:8668107
Promoter ID:EPDNEW_M12084
Type:initiation region
Name:Ripor1_2
Description:Mus musculus RHO family interacting cell polarization regulator1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M12083  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm388105,613,258 - 105,613,318EPDNEW
RGD ID:6843128
Promoter ID:MM_KWN:55560
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000109346
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv368108,117,604 - 108,118,104 (+)MPROMDB
RGD ID:6843127
Promoter ID:MM_KWN:55561
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_001081241
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv368108,128,756 - 108,129,347 (+)MPROMDB
RGD ID:6848885
Promoter ID:MM_TRO:9693
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:MTR004699.8.1935.5
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv368108,145,581 - 108,146,081 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1922937 AgrOrtholog
Ensembl Genes ENSMUSG00000038604 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000039966 ENTREZGENE
  ENSMUSP00000039966.9 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000043531 ENTREZGENE
  ENSMUST00000043531.10 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot
InterPro ARM-like UniProtKB/Swiss-Prot
  ARM-type_fold UniProtKB/Swiss-Prot
  FAM65_N UniProtKB/Swiss-Prot
  RIPOR3 UniProtKB/Swiss-Prot
KEGG Report mmu:75687 UniProtKB/Swiss-Prot
MGD MGI:1922937 ENTREZGENE
NCBI Gene 75687 ENTREZGENE
PANTHER PTHR15829 UniProtKB/Swiss-Prot
  RHO FAMILY-INTERACTING CELL POLARIZATION REGULATOR 1 UniProtKB/Swiss-Prot
Pfam PL48 UniProtKB/Swiss-Prot
PhenoGen Ripor1 PhenoGen
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot
UniProt Q68FE6 ENTREZGENE
  Q9D6R4 ENTREZGENE
  RIPR1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary G5E8A2 UniProtKB/Swiss-Prot
  Q80T73 UniProtKB/Swiss-Prot
  Q8K0T1 UniProtKB/Swiss-Prot
  Q9D6R4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-06 Ripor1  RHO family interacting cell polarization regulator 1  Fam65a  family with sequence similarity 65, member A  Symbol and/or name change 5135510 APPROVED