Sdc2 (syndecan 2) - Rat Genome Database

Name: Sdc2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Sdc2 (syndecan 2) Chinchilla lanigera

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Symbol:

Sdc2

Name:

syndecan 2

RGD ID:

8734870

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN dendrite morphogenesis (ortholog); regulation of dendrite morphogenesis (ortholog); regulation of synapse assembly (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; syndecan signaling pathway; ASSOCIATED WITH cleft lip (ortholog); cleft palate (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN glutamatergic synapse (ortholog); neuronal cell body (ortholog); plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

syndecan-2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SDC2 (syndecan 2)	NCBI	Ortholog
Mus musculus (house mouse):	Sdc2 (syndecan 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Sdc2 (syndecan 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SDC2 (syndecan 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SDC2 (syndecan 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sdc2 (syndecan 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SDC2 (syndecan 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SDC2 (syndecan 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sdc2 (syndecan 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955417	12,462,354 - 12,564,633 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955417	12,462,354 - 12,563,374 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cleft lip (ISO)

cleft palate (ISO)

type 2 diabetes mellitus (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

dendrite morphogenesis (ISO)

regulation of dendrite morphogenesis (ISO)

regulation of synapse assembly (ISO)

regulation of synapse maturation (ISO)

response to caffeine (ISO)

response to hypoxia (ISO)

Cellular Component

glutamatergic synapse (ISO)

neuronal cell body (ISO)

plasma membrane (ISO)

postsynaptic membrane (ISO)

presynaptic membrane (ISO)

Molecular Function

identical protein binding (ISO)

PDZ domain binding (ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

fibroblast growth factor signaling pathway (ISO)

syndecan signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Sdc2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955417	12,462,354 - 12,564,633 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955417	12,462,354 - 12,563,374 (+)	NCBI	ChiLan1.0	ChiLan1.0

SDC2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	96,493,813 - 96,611,790 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	96,493,813 - 96,611,790 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	97,506,041 - 97,624,018 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	97,575,058 - 97,693,213 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	97,575,057 - 97,693,213	NCBI
Celera	8	93,691,860 - 93,810,255 (+)	NCBI		Celera
Cytogenetic Map	8	q22.1	NCBI
HuRef	8	92,711,380 - 92,829,628 (+)	NCBI		HuRef
CHM1_1	8	97,546,134 - 97,664,535 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	97,619,532 - 97,737,516 (+)	NCBI		T2T-CHM13v2.0

Sdc2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	32,920,869 - 33,034,867 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	32,920,869 - 33,035,081 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	32,920,723 - 33,034,721 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	32,920,723 - 33,034,935 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	32,850,478 - 32,964,476 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	32,865,312 - 32,979,310 (+)	NCBI		MGSCv36	mm8
Celera	15	33,584,115 - 33,695,490 (+)	NCBI		Celera
Cytogenetic Map	15	B3.1	NCBI
cM Map	15	13.74	NCBI

Sdc2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	66,012,405 - 66,125,101 (+)	NCBI		GRCr8
mRatBN7.2	7	64,127,185 - 64,239,885 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	64,127,110 - 64,241,081 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	66,016,363 - 66,129,168 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	68,218,571 - 68,331,380 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	68,008,023 - 68,120,333 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	71,572,731 - 71,686,139 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	71,572,941 - 71,686,044 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	71,743,895 - 71,857,365 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	68,290,558 - 68,405,183 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	68,311,497 - 68,426,917 (+)	NCBI
Celera	7	61,250,356 - 61,362,471 (+)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

SDC2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	113,822,721 - 113,937,524 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	89,361,614 - 89,478,168 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	93,118,379 - 93,230,803 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	95,314,910 - 95,428,519 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	95,314,910 - 95,428,519 (+)	Ensembl	panpan1.1		panPan2

SDC2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	29	40,939,498 - 41,026,694 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	29	40,939,257 - 41,024,357 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
ROS_Cfam_1.0	29	41,126,548 - 41,219,188 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	29	41,169,044 - 41,261,257 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	41,141,750 - 41,229,172 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	41,600,748 - 41,693,152 (+)	NCBI		UU_Cfam_GSD_1.0

Sdc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	38,541,717 - 38,648,722 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	45,967,303 - 46,074,812 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	45,967,816 - 46,074,820 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SDC2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	40,001,395 - 40,129,697 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	40,003,618 - 40,129,483 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	43,121,719 - 43,248,283 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SDC2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	91,451,808 - 91,570,778 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	91,552,647 - 91,568,828 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	49,216,156 - 49,335,471 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sdc2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624763	3,809,569 - 3,919,346 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624763	3,809,850 - 3,920,364 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005381834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005381835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01018162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCQ01035364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000008801 ⟹ ENSCLAP00000008673

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955417	12,462,354 - 12,564,633 (+)	Ensembl

RefSeq Acc Id:

XM_005381834 ⟹ XP_005381891

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955417	12,462,354 - 12,563,374 (+)	NCBI

Sequence:

show sequence

CCACCAGCCCGCCCCGGCGCGCGGCTGTCCAGACGCCCCGGGAGCTCCGGCCGCGCGGATCGCG
CGCCCCCGCCGCTCGGCCCCCAAACTTCAGCTCCATTTCGAGCCGTCGAGTTTATTCCTTAAAA
CCAGAAACCAAGCCGCGACGCGGGGAAAGAGTCCGCGGGGGAAGGAGTAAAACCACAGCGGACC
CGGAGAAGCTCCAGAGAGCAGCCTCCCTGGAGCGCCAACTCTGTGCCCGGAGCGCAGAAACCAA
CAAGTGAGAAGGCGCCGCGTTCCCGGGGCGCAGCGCGGGCGGCAGGAGCAGGCGCAGGAGAGAG
CGGGCGCCCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCGGATCGCGGCGGCTGCTCGGCTCCG
GATTCCTCTGCGCGGGCTGAGCGCTGGGCAGGAGGCTTCGTTTCACTCTCTTTGCGAGCGGCTG
TGAGAGAAGCCGGTTCCTGAGGAATATGCGGCGCGCGTGGATCTTGCTCACCTTGGGCTTCGTA
GCCTGCGTGTCGGCGGAGTCGAGAGCAGAGCTGACGTCTGATAAAGACATGTACCTTGACAACA
GTTCCATTGAAGATGCGTCAGGAGTGTACCCTATTGACGACGACGACTATGCTTCTGCTTCCGG
CTCAGGAGCTGATGAGGATGTAGAAAGTCCAGAGCTGACGACGTCTCGACCACTGCTTCCAAAG
ATACCATTCACTAGTGTTGCTCCCAAAGTGGAAACCACGACGCTGAAGACACACGACAGGATAC
CTGCTCAGACGAAGTCACCTGAAGAAATTGATAAAGGGGAAGTTCACCTCTCTGACACAGAAAA
GAAAATGAACCCTGCTGAAGAGAATAAAAACGTGTATACTGAGAAACACTCAGACAACCTGTTT
AAACGCACAGAAGTCCTAGCAGCTGTCATTGCTGGTGGAGTTATTGGCTTCCTCTTCGCGATTT
TCCTCATCCTGCTGTTGGTGTACCGCATGAGAAAGAAGGACGAAGGGAGCTATGACCTTGGAGA
GCGCAAACCATCCAGTGCTGCTTACCAGAAAGCACCTACTAAGGAGTTTTACGCATAAAACTCC
CACTTAGTGTCTCTTTTTCTGAGATCACTGAACTTTTCAAAATAAAGCTTTTGCATAGAATAAT
GAAGATCTTTGTTTTTTGTTTTTTTCATTAAAGAGCCATCCTGGCACTTTAATGATAAAATCCC
ATTGTATTTAAAACTTTTCATGTATTTCTTTAGAAAGACATAAAATTAAAATTTAACATCTGCA
GTGTTCTGTGAATAGCAGTGGCAAAATATGTTATGAAAACCCTTGATGTTCATGGAATCGGTTA
AACTTTTTATGCGAAAATACGATTGTTTTGTCCTATGGTTCAAAGATGAAAGCTATGTCATTTG
TGTTAGCATGTCTCAGATGGACCTTACCAAGTTGGTCTTACTTTGTTAATTTATCTGATGTCCC
CTCTTTTCTGCCCTCCCTTCTTATCCCCTTACAAGCCAAACTGAATCCCATGCCTTTCTGTAGC
TGTCATGGTGCAATTTGTCTTTGGATGATTCAGATAATAGTAATTTAGTGTATATGTGATTTTC
AAATATGTAAACTTTAACCTCCACTTTGTGTAAATTTTTAAATGTCAGACTATCCATTTTACAC
TTGCTTTATTTTTCATTACCTGTAGCTTCAGGCAGATTTATAACAGCAAATCTATGTGTAAAAT
TGGATTATTACTACAAAATGTTTAGTCCAATCTATCTGATCAGATCTTCTCTTCAGAGGATTTG
ATGGAAGTTACTGACAAGCCTCAGCAAGCCCAAAGATGCTCTCAGTATTTTGAAAAGTTGCTGC
AGATTCCTTTGGCCACTGTTTTTGTTAATTTCTTGCAATTTGAAGGTACAAGGAGGGGTTTAAA
GAAAAAAAGCGGTTTTCATTTTTAAAAATGCATTTAAGTTGTAAACATCCTTTTAAGCCTTTGA
AGTGCCTATGATTCTATGTAACTTGTCACAGACTGGTGTTGAGTATATATAACAGTTTAAAAAA
GTTGGTATTTTATAAGCACAGACAATTCTAATGGTAACTTTTGTAGTCTTATGAATAGACATAA
ATTGTAATTTGGGAACATAAAAACTACTGAATAAATCATGTGGCCTAATTGAAAATGTCACTGT
TATAAATTTTGTACATTTTCGATCAAATGTACATCTCCCCTTTGCTGATGACCATCTGCTCTCA
AGAATGTTGGGGTTTGATTCTGCGTGTTCCACAGTGTCTGTAAATCAAGACCAAAGAGCCCGTC
AGTGGGGCTGTTTATTACCAGATTCTCGAATTGGCCAGAGGAAAGCCGAGTGCATTGTCCTGTG
TATATCTTGGTACAGATATTGGGAGGTTGCCAGGGAATTCCGAAGTTTGCTACCTTTGTGGGGT
AGCTGGTGGCAGTATTGAGACAGATGTCTGCTTTTGCAAATAACTTCTTAGACTGTAAATTCCA
AAGAACTGAAGGGGGGTTTTCCGGAAGTAGCTATCTCAGGCTTAGTCCTGTGAATTGATTTACC
TTGCAAAGTGTGCTGTTTGTGTTAAAAATGAGGGCCTTGCTGCTTGGGATCAAAATAGCTGGAA
AGAGTGATGCCTCAGGAGGAGAGGAGGGTACCCTGCCTGGGTCCTTACTGTTCTGAACATTTCC
TTTTTACATGTTATTAATTTTGTTTTAAATTTTGAGCCCTGGAAGTAGGAAAAAGGTAGCAAAA
ACAGCAACTTTTTCGATATGTAAGCTTTTAAGAAAGTTAGAATGCTTCATTTAGAAAACATTCC
CTGGGATTGCCACCGAACTCATTTTTAAAGAAAAGTTTTAAAGCAACACTGAAGCAGTGTTTAC
TTAAATTCTTAATGGCCTTAATTGTCAAATCTCCTCCCCCACCACTTACAGACTCGATTCACTT
TATTTAGAGTAATTAAAAGGAACCGATAGGTCCTTCAGATACCGCGCACAATAGCCCTCATTAC
AGAGGTTAAGAATGTAGTGGGTTTACCTCTAACTGTGCAAAGCAGAGTGAAATTCTATTCCTAG
AACAACTTGCTTGGAATATCCGTGCCAGGAAAAGAATTTTTCTGGCAAATATTTTGTCACTGCT
GTAAAGCAAAATATTTGTTAAAGTGCCAAAATAAAGTCTGTCATGCCGAAAGTAAA

hide sequence

RefSeq Acc Id:

XM_005381835 ⟹ XP_005381892

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955417	12,534,055 - 12,563,374 (+)	NCBI

Sequence:

show sequence

GGGAGAAGTAGAAGGATGTCTTTGTTCTGGAGCATTGACCAAAGCCAGAGAGCAGAGCTGACGT
CTGATAAAGACATGTACCTTGACAACAGTTCCATTGAAGATGCGTCAGGAGTGTACCCTATTGA
CGACGACGACTATGCTTCTGCTTCCGGCTCAGGAGCTGATGAGGATGTAGAAAGTCCAGAGCTG
ACGACGTCTCGACCACTGCTTCCAAAGATACCATTCACTAGTGTTGCTCCCAAAGTGGAAACCA
CGACGCTGAAGACACACGACAGGATACCTGCTCAGACGAAGTCACCTGAAGAAATTGATAAAGG
GGAAGTTCACCTCTCTGACACAGAAAAGAAAATGAACCCTGCTGAAGAGAATAAAAACGTGTAT
ACTGAGAAACACTCAGACAACCTGTTTAAACGCACAGAAGTCCTAGCAGCTGTCATTGCTGGTG
GAGTTATTGGCTTCCTCTTCGCGATTTTCCTCATCCTGCTGTTGGTGTACCGCATGAGAAAGAA
GGACGAAGGGAGCTATGACCTTGGAGAGCGCAAACCATCCAGTGCTGCTTACCAGAAAGCACCT
ACTAAGGAGTTTTACGCATAAAACTCCCACTTAGTGTCTCTTTTTCTGAGATCACTGAACTTTT
CAAAATAAAGCTTTTGCATAGAATAATGAAGATCTTTGTTTTTTGTTTTTTTCATTAAAGAGCC
ATCCTGGCACTTTAATGATAAAATCCCATTGTATTTAAAACTTTTCATGTATTTCTTTAGAAAG
ACATAAAATTAAAATTTAACATCTGCAGTGTTCTGTGAATAGCAGTGGCAAAATATGTTATGAA
AACCCTTGATGTTCATGGAATCGGTTAAACTTTTTATGCGAAAATACGATTGTTTTGTCCTATG
GTTCAAAGATGAAAGCTATGTCATTTGTGTTAGCATGTCTCAGATGGACCTTACCAAGTTGGTC
TTACTTTGTTAATTTATCTGATGTCCCCTCTTTTCTGCCCTCCCTTCTTATCCCCTTACAAGCC
AAACTGAATCCCATGCCTTTCTGTAGCTGTCATGGTGCAATTTGTCTTTGGATGATTCAGATAA
TAGTAATTTAGTGTATATGTGATTTTCAAATATGTAAACTTTAACCTCCACTTTGTGTAAATTT
TTAAATGTCAGACTATCCATTTTACACTTGCTTTATTTTTCATTACCTGTAGCTTCAGGCAGAT
TTATAACAGCAAATCTATGTGTAAAATTGGATTATTACTACAAAATGTTTAGTCCAATCTATCT
GATCAGATCTTCTCTTCAGAGGATTTGATGGAAGTTACTGACAAGCCTCAGCAAGCCCAAAGAT
GCTCTCAGTATTTTGAAAAGTTGCTGCAGATTCCTTTGGCCACTGTTTTTGTTAATTTCTTGCA
ATTTGAAGGTACAAGGAGGGGTTTAAAGAAAAAAAGCGGTTTTCATTTTTAAAAATGCATTTAA
GTTGTAAACATCCTTTTAAGCCTTTGAAGTGCCTATGATTCTATGTAACTTGTCACAGACTGGT
GTTGAGTATATATAACAGTTTAAAAAAGTTGGTATTTTATAAGCACAGACAATTCTAATGGTAA
CTTTTGTAGTCTTATGAATAGACATAAATTGTAATTTGGGAACATAAAAACTACTGAATAAATC
ATGTGGCCTAATTGAAAATGTCACTGTTATAAATTTTGTACATTTTCGATCAAATGTACATCTC
CCCTTTGCTGATGACCATCTGCTCTCAAGAATGTTGGGGTTTGATTCTGCGTGTTCCACAGTGT
CTGTAAATCAAGACCAAAGAGCCCGTCAGTGGGGCTGTTTATTACCAGATTCTCGAATTGGCCA
GAGGAAAGCCGAGTGCATTGTCCTGTGTATATCTTGGTACAGATATTGGGAGGTTGCCAGGGAA
TTCCGAAGTTTGCTACCTTTGTGGGGTAGCTGGTGGCAGTATTGAGACAGATGTCTGCTTTTGC
AAATAACTTCTTAGACTGTAAATTCCAAAGAACTGAAGGGGGGTTTTCCGGAAGTAGCTATCTC
AGGCTTAGTCCTGTGAATTGATTTACCTTGCAAAGTGTGCTGTTTGTGTTAAAAATGAGGGCCT
TGCTGCTTGGGATCAAAATAGCTGGAAAGAGTGATGCCTCAGGAGGAGAGGAGGGTACCCTGCC
TGGGTCCTTACTGTTCTGAACATTTCCTTTTTACATGTTATTAATTTTGTTTTAAATTTTGAGC
CCTGGAAGTAGGAAAAAGGTAGCAAAAACAGCAACTTTTTCGATATGTAAGCTTTTAAGAAAGT
TAGAATGCTTCATTTAGAAAACATTCCCTGGGATTGCCACCGAACTCATTTTTAAAGAAAAGTT
TTAAAGCAACACTGAAGCAGTGTTTACTTAAATTCTTAATGGCCTTAATTGTCAAATCTCCTCC
CCCACCACTTACAGACTCGATTCACTTTATTTAGAGTAATTAAAAGGAACCGATAGGTCCTTCA
GATACCGCGCACAATAGCCCTCATTACAGAGGTTAAGAATGTAGTGGGTTTACCTCTAACTGTG
CAAAGCAGAGTGAAATTCTATTCCTAGAACAACTTGCTTGGAATATCCGTGCCAGGAAAAGAAT
TTTTCTGGCAAATATTTTGTCACTGCTGTAAAGCAAAATATTTGTTAAAGTGCCAAAATAAAGT
CTGTCATGCCGAAAGTAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005381891	(Get FASTA)	NCBI Sequence Viewer
	XP_005381892	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000008673
	ENSCLAP00000008673.1

RefSeq Acc Id:	XP_005381891 ⟸ XM_005381834
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2V101 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRRAWILLTLGFVACVSAESRAELTSDKDMYLDNSSIEDASGVYPIDDDDYASASGSGADEDVE SPELTTSRPLLPKIPFTSVAPKVETTTLKTHDRIPAQTKSPEEIDKGEVHLSDTEKKMNPAEEN KNVYTEKHSDNLFKRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGERKPSSAAY QKAPTKEFYA hide sequence

RefSeq Acc Id:	XP_005381892 ⟸ XM_005381835
- Peptide Label:	isoform X2
- Sequence:	show sequence MSLFWSIDQSQRAELTSDKDMYLDNSSIEDASGVYPIDDDDYASASGSGADEDVESPELTTSRP LLPKIPFTSVAPKVETTTLKTHDRIPAQTKSPEEIDKGEVHLSDTEKKMNPAEENKNVYTEKHS DNLFKRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGERKPSSAAYQKAPTKEFY A hide sequence

Ensembl Acc Id:

ENSCLAP00000008673 ⟸ ENSCLAT00000008801

Protein Domains

Neurexin/syndecan/glycophorin C

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000006071	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000008801	ENTREZGENE
	ENSCLAT00000008801.1	UniProtKB/TrEMBL
InterPro	Neurexin-like	UniProtKB/TrEMBL
	Syndecan	UniProtKB/TrEMBL
	Syndecan/Neurexin_dom	UniProtKB/TrEMBL
	Syndecan_CS	UniProtKB/TrEMBL
NCBI Gene	Sdc2	ENTREZGENE
PANTHER	PTHR10915	UniProtKB/TrEMBL
	PTHR10915:SF6	UniProtKB/TrEMBL
Pfam	Syndecan	UniProtKB/TrEMBL
PROSITE	PROKAR_LIPOPROTEIN	UniProtKB/TrEMBL
	SYNDECAN	UniProtKB/TrEMBL
SMART	4.1m	UniProtKB/TrEMBL
UniProt	A0A8C2V101	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - PID (archival)