Dnlz (DNL-type zinc finger) - Rat Genome Database

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Gene: Dnlz (DNL-type zinc finger) Chinchilla lanigera
Analyze
Symbol: Dnlz
Name: DNL-type zinc finger
RGD ID: 8732133
Description: ENCODES a protein that exhibits protein folding chaperone (ortholog); INVOLVED IN chaperone-mediated protein complex assembly (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555134,359,421 - 4,361,081 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555134,359,421 - 4,361,081 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)
mitochondrion  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dnlz
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555134,359,421 - 4,361,081 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555134,359,421 - 4,361,081 (+)NCBIChiLan1.0ChiLan1.0
DNLZ
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389136,359,483 - 136,363,744 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9136,359,480 - 136,363,744 (-)EnsemblGRCh38hg38GRCh38
GRCh379139,253,935 - 139,258,196 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369138,376,173 - 138,378,062 (-)NCBINCBI36Build 36hg18NCBI36
Celera9109,771,288 - 109,773,177 (-)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9108,715,708 - 108,717,619 (-)NCBIHuRef
CHM1_19139,404,548 - 139,406,459 (-)NCBICHM1_1
T2T-CHM13v2.09148,588,818 - 148,593,075 (-)NCBIT2T-CHM13v2.0
Dnlz
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39226,238,130 - 26,242,122 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl226,238,133 - 26,242,122 (-)EnsemblGRCm39 Ensembl
GRCm38226,348,118 - 26,352,110 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl226,348,121 - 26,352,110 (-)EnsemblGRCm38mm10GRCm38
MGSCv37226,203,638 - 26,207,630 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36226,203,643 - 26,207,630 (-)NCBIMGSCv36mm8
Celera226,065,813 - 26,069,805 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map218.87NCBI
Dnlz
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8329,568,041 - 29,569,937 (-)NCBIGRCr8
mRatBN7.239,169,948 - 9,171,727 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl39,169,793 - 9,180,551 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx312,223,325 - 12,225,104 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0320,806,555 - 20,808,334 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0319,061,892 - 19,063,671 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.033,796,480 - 3,798,467 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl33,796,480 - 3,798,239 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.039,157,626 - 9,159,542 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.434,522,915 - 4,524,662 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.134,522,914 - 4,524,733 (-)NCBI
Celera33,989,863 - 3,991,610 (-)NCBICelera
Cytogenetic Map3p13NCBI
DNLZ
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2113,022,675 - 3,024,687 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan193,025,204 - 3,029,437 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09107,432,709 - 107,436,360 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19136,411,832 - 136,416,279 (-)NCBIpanpan1.1PanPan1.1panPan2
DNLZ
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1949,120,802 - 49,122,789 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl949,120,818 - 49,122,804 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha948,371,497 - 48,373,350 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0949,997,572 - 49,999,427 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,997,567 - 50,001,581 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1948,778,121 - 48,779,896 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0949,072,294 - 49,074,228 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0949,119,821 - 49,121,756 (+)NCBIUU_Cfam_GSD_1.0
Dnlz
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947201,935,149 - 201,936,953 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366691,438,227 - 1,439,814 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366691,438,129 - 1,439,909 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNLZ
(Sus scrofa - pig)		 No map positions available.
DNLZ
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1121,841,598 - 1,846,006 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl121,841,738 - 1,843,462 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660583,370,130 - 3,374,604 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnlz
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247601,531,439 - 1,533,170 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247601,531,439 - 1,533,176 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000010435   ⟹   ENSCLAP00000010305
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555134,359,421 - 4,361,081 (+)Ensembl
RefSeq Acc Id: XM_013506617   ⟹   XP_013362071
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555134,359,421 - 4,361,081 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013362071 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000010305
  ENSCLAP00000010305.1
RefSeq Acc Id: XP_013362071   ⟸   XM_013506617
- UniProtKB: A0A8C2V4U1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000010305   ⟸   ENSCLAT00000010435
Protein Domains
DNL-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007124 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010435 ENTREZGENE
  ENSCLAT00000010435.1 UniProtKB/TrEMBL
InterPro Mt_import_TIM15 UniProtKB/TrEMBL
  Znf_DNL-typ UniProtKB/TrEMBL
NCBI Gene LOC102009745 ENTREZGENE
PANTHER DNL-TYPE ZINC FINGER PROTEIN UniProtKB/TrEMBL
  PTHR20922 UniProtKB/TrEMBL
Pfam zf-DNL UniProtKB/TrEMBL
PROSITE ZF_DNL UniProtKB/TrEMBL
UniProt A0A8C2V4U1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Dnlz  DNL-type zinc finger  LOC102009745  DNL-type zinc finger protein-like  Symbol and/or name change 5135510 APPROVED