Ttc38 (tetratricopeptide repeat domain 38) - Rat Genome Database

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Gene: Ttc38 (tetratricopeptide repeat domain 38) Chinchilla lanigera
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Symbol: Ttc38
Name: tetratricopeptide repeat domain 38
RGD ID: 8730800
Description: ASSOCIATED WITH intellectual disability (ortholog); Phelan-McDermid syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tetratricopeptide repeat protein 38
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541330,390,722 - 30,413,955 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541330,391,385 - 30,411,210 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ttc38Chinchillaintellectual disability  ISOTTC38 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
Ttc38ChinchillaPhelan-McDermid syndrome  ISOTTC38 (Homo sapiens)8554872ClinVar Annotator: match by term: Phelan-McDermid syndromeClinVar 


Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ttc38Chinchillaprotein binding enablesISOUniProtKB:Q999859068941 PMID:33961781IntActPMID:33961781


#
Reference Title
Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
PMID:22301074  



Ttc38
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541330,390,722 - 30,413,955 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541330,391,385 - 30,411,210 (+)NCBIChiLan1.0ChiLan1.0
TTC38
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382246,268,008 - 46,294,008 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2246,267,961 - 46,294,008 (+)EnsemblGRCh38hg38GRCh38
GRCh372246,663,905 - 46,689,905 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362245,042,525 - 45,068,569 (+)NCBINCBI36Build 36hg18NCBI36
Celera2230,571,246 - 30,597,288 (+)NCBICelera
Cytogenetic Map22q13.31NCBI
HuRef2229,607,837 - 29,633,914 (+)NCBIHuRef
CHM1_12246,622,594 - 46,648,635 (+)NCBICHM1_1
T2T-CHM13v2.02246,752,708 - 46,778,705 (+)NCBIT2T-CHM13v2.0
Ttc38
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391585,716,545 - 85,743,023 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1585,716,507 - 85,743,023 (+)EnsemblGRCm39 Ensembl
GRCm381585,832,282 - 85,858,822 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1585,832,306 - 85,858,822 (+)EnsemblGRCm38mm10GRCm38
MGSCv371585,662,734 - 85,689,252 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361585,660,110 - 85,685,499 (+)NCBIMGSCv36mm8
Celera1587,964,196 - 87,991,957 (+)NCBICelera
Cytogenetic Map15E2NCBI
cM Map1540.42NCBI
Ttc38
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87118,805,115 - 118,828,449 (+)NCBIGRCr8
mRatBN7.27116,925,273 - 116,948,616 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7116,925,257 - 116,948,611 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7118,676,127 - 118,697,459 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07120,901,755 - 120,923,085 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07120,871,316 - 120,892,648 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07126,711,674 - 126,735,013 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7126,711,467 - 126,735,007 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07126,422,437 - 126,446,125 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47123,837,048 - 123,858,284 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17123,870,917 - 123,892,294 (+)NCBI
Celera7113,216,370 - 113,237,599 (+)NCBICelera
Cytogenetic Map7q34NCBI
TTC38
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22356,094,810 - 56,123,432 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12258,794,326 - 58,821,455 (+)NCBINHGRI_mPanPan1
PanPan1.12245,333,321 - 45,360,053 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2245,333,321 - 45,360,053 (+)Ensemblpanpan1.1panPan2
TTC38
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11019,887,285 - 19,910,347 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1019,773,373 - 19,910,683 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1019,809,856 - 19,832,910 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01020,620,897 - 20,644,214 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1020,620,908 - 20,644,218 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11020,341,478 - 20,364,501 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01020,654,310 - 20,677,329 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01020,836,049 - 20,859,104 (-)NCBIUU_Cfam_GSD_1.0
Ttc38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049453,619,198 - 3,640,103 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366293,619,175 - 3,640,304 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366293,619,190 - 3,640,046 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC38
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl53,248,346 - 3,270,778 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.153,248,342 - 3,270,815 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25520,842 - 543,411 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TTC38
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11928,749,590 - 28,775,475 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1928,749,657 - 28,777,171 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604596,755,394 - 96,781,722 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttc38
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247523,576,695 - 3,602,658 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247523,578,459 - 3,602,650 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.






Ensembl Acc Id: ENSCLAT00000025035   ⟹   ENSCLAP00000024795
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541330,390,722 - 30,413,955 (+)Ensembl
RefSeq Acc Id: XM_005379507   ⟹   XP_005379564
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541330,391,387 - 30,411,210 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013511392   ⟹   XP_013366846
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541330,391,385 - 30,411,210 (+)NCBI
Sequence:
Protein RefSeqs XP_005379564 (Get FASTA)   NCBI Sequence Viewer  
  XP_013366846 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024795
  ENSCLAP00000024795.1
RefSeq Acc Id: XP_005379564   ⟸   XM_005379507
- Peptide Label: isoform X2
- UniProtKB: A0A8C2W8J4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366846   ⟸   XM_013511392
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSCLAP00000024795   ⟸   ENSCLAT00000025035



1 to 11 of 11 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCLAG00000017023 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025035 ENTREZGENE
  ENSCLAT00000025035.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TTC38 UniProtKB/TrEMBL
NCBI Gene Ttc38 ENTREZGENE
PANTHER PTHR16263 UniProtKB/TrEMBL
  TETRATRICOPEPTIDE REPEAT PROTEIN 38 UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A8C2W8J4 ENTREZGENE, UniProtKB/TrEMBL
1 to 11 of 11 rows