TTC38 (tetratricopeptide repeat domain 38) - Rat Genome Database

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Gene: TTC38 (tetratricopeptide repeat domain 38) Sus scrofa
Analyze
Symbol: TTC38
Name: tetratricopeptide repeat domain 38
RGD ID: 14202388
Description: ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); Phelan-McDermid syndrome (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tetratricopeptide repeat protein 38
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl53,248,346 - 3,270,778 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.153,248,342 - 3,270,815 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25520,842 - 543,411 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:22301074  


Genomics

Comparative Map Data
TTC38
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl53,248,346 - 3,270,778 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.153,248,342 - 3,270,815 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25520,842 - 543,411 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TTC38
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382246,268,008 - 46,294,008 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2246,267,961 - 46,294,008 (+)EnsemblGRCh38hg38GRCh38
GRCh372246,663,905 - 46,689,905 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362245,042,525 - 45,068,569 (+)NCBINCBI36Build 36hg18NCBI36
Celera2230,571,246 - 30,597,288 (+)NCBICelera
Cytogenetic Map22q13.31NCBI
HuRef2229,607,837 - 29,633,914 (+)NCBIHuRef
CHM1_12246,622,594 - 46,648,635 (+)NCBICHM1_1
T2T-CHM13v2.02246,752,708 - 46,778,705 (+)NCBIT2T-CHM13v2.0
Ttc38
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391585,716,545 - 85,743,023 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1585,716,507 - 85,743,023 (+)EnsemblGRCm39 Ensembl
GRCm381585,832,282 - 85,858,822 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1585,832,306 - 85,858,822 (+)EnsemblGRCm38mm10GRCm38
MGSCv371585,662,734 - 85,689,252 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361585,660,110 - 85,685,499 (+)NCBIMGSCv36mm8
Celera1587,964,196 - 87,991,957 (+)NCBICelera
Cytogenetic Map15E2NCBI
cM Map1540.42NCBI
Ttc38
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87118,805,115 - 118,828,449 (+)NCBIGRCr8
mRatBN7.27116,925,273 - 116,948,616 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7116,925,257 - 116,948,611 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7118,676,127 - 118,697,459 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07120,901,755 - 120,923,085 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07120,871,316 - 120,892,648 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07126,711,674 - 126,735,013 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7126,711,467 - 126,735,007 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07126,422,437 - 126,446,125 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47123,837,048 - 123,858,284 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17123,870,917 - 123,892,294 (+)NCBI
Celera7113,216,370 - 113,237,599 (+)NCBICelera
Cytogenetic Map7q34NCBI
Ttc38
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541330,390,722 - 30,413,955 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541330,391,385 - 30,411,210 (+)NCBIChiLan1.0ChiLan1.0
TTC38
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22356,094,810 - 56,123,432 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12258,794,326 - 58,821,455 (+)NCBINHGRI_mPanPan1
PanPan1.12245,333,321 - 45,360,053 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2245,333,321 - 45,360,053 (+)Ensemblpanpan1.1panPan2
TTC38
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11019,887,285 - 19,910,347 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1019,773,373 - 19,910,683 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1019,809,856 - 19,832,910 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01020,620,897 - 20,644,214 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1020,620,908 - 20,644,218 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11020,341,478 - 20,364,501 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01020,654,310 - 20,677,329 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01020,836,049 - 20,859,104 (-)NCBIUU_Cfam_GSD_1.0
Ttc38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049453,619,198 - 3,640,103 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366293,619,175 - 3,640,304 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366293,619,190 - 3,640,046 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC38
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11928,749,590 - 28,775,475 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1928,749,657 - 28,777,171 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604596,755,394 - 96,781,722 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttc38
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247523,576,695 - 3,602,658 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247523,578,459 - 3,602,650 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TTC38
782 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 5
Low 5 4 3 5 2 22 2 3 3
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000000004   ⟹   ENSSSCP00000000004
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl53,248,346 - 3,270,778 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000052628   ⟹   ENSSSCP00000045763
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl53,248,346 - 3,269,797 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000064304   ⟹   ENSSSCP00000043228
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl53,248,346 - 3,269,797 (-)Ensembl
RefSeq Acc Id: XM_003125951   ⟹   XP_003125999
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.153,248,342 - 3,270,815 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013988182   ⟹   XP_013843636
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.153,248,342 - 3,270,815 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013988183   ⟹   XP_013843637
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.153,248,342 - 3,270,742 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021091377   ⟹   XP_020947036
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.153,248,342 - 3,270,815 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020947036   ⟸   XM_021091377
- Peptide Label: isoform X2
- UniProtKB: A0A8D0XRK8 (UniProtKB/TrEMBL),   A0A8D0Z4W1 (UniProtKB/TrEMBL),   F1SM81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003125999   ⟸   XM_003125951
- Peptide Label: isoform X3
- UniProtKB: F1SM81 (UniProtKB/TrEMBL),   A0A480V890 (UniProtKB/TrEMBL),   A0A4X1W4N0 (UniProtKB/TrEMBL),   A0A8D0Z4W1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013843636   ⟸   XM_013988182
- Peptide Label: isoform X1
- UniProtKB: A0A8D0Z4W1 (UniProtKB/TrEMBL),   F1SM81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013843637   ⟸   XM_013988183
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSSSCP00000043228   ⟸   ENSSSCT00000064304
RefSeq Acc Id: ENSSSCP00000045763   ⟸   ENSSSCT00000052628
RefSeq Acc Id: ENSSSCP00000000004   ⟸   ENSSSCT00000000004


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000003 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025056809 UniProtKB/TrEMBL
  ENSSSCG00030060066 UniProtKB/TrEMBL
  ENSSSCG00035022537 UniProtKB/TrEMBL
  ENSSSCG00040009821 UniProtKB/TrEMBL
  ENSSSCG00050051513 UniProtKB/TrEMBL
  ENSSSCG00055028751 UniProtKB/TrEMBL
  ENSSSCG00060020989 UniProtKB/TrEMBL
  ENSSSCG00065040400 UniProtKB/TrEMBL
  ENSSSCG00070028807 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000000004 ENTREZGENE
  ENSSSCT00000000004.5 UniProtKB/TrEMBL
  ENSSSCT00000052628 ENTREZGENE
  ENSSSCT00000052628.3 UniProtKB/TrEMBL
  ENSSSCT00000064304.3 UniProtKB/TrEMBL
  ENSSSCT00025078288.1 UniProtKB/TrEMBL
  ENSSSCT00025078522.1 UniProtKB/TrEMBL
  ENSSSCT00030084019.1 UniProtKB/TrEMBL
  ENSSSCT00030084084.1 UniProtKB/TrEMBL
  ENSSSCT00030084112.1 UniProtKB/TrEMBL
  ENSSSCT00030084130.1 UniProtKB/TrEMBL
  ENSSSCT00035029439.1 UniProtKB/TrEMBL
  ENSSSCT00035029453.1 UniProtKB/TrEMBL
  ENSSSCT00035029464.1 UniProtKB/TrEMBL
  ENSSSCT00035029477.1 UniProtKB/TrEMBL
  ENSSSCT00040012943.1 UniProtKB/TrEMBL
  ENSSSCT00040013044.1 UniProtKB/TrEMBL
  ENSSSCT00040013093.1 UniProtKB/TrEMBL
  ENSSSCT00040013152.1 UniProtKB/TrEMBL
  ENSSSCT00050070131.1 UniProtKB/TrEMBL
  ENSSSCT00050070158.1 UniProtKB/TrEMBL
  ENSSSCT00050070178.1 UniProtKB/TrEMBL
  ENSSSCT00050070201.1 UniProtKB/TrEMBL
  ENSSSCT00055057124.1 UniProtKB/TrEMBL
  ENSSSCT00055057180.1 UniProtKB/TrEMBL
  ENSSSCT00055057220.1 UniProtKB/TrEMBL
  ENSSSCT00060028490.1 UniProtKB/TrEMBL
  ENSSSCT00060028503.1 UniProtKB/TrEMBL
  ENSSSCT00065055235.1 UniProtKB/TrEMBL
  ENSSSCT00065055244.1 UniProtKB/TrEMBL
  ENSSSCT00065055256.1 UniProtKB/TrEMBL
  ENSSSCT00065055260.1 UniProtKB/TrEMBL
  ENSSSCT00070057791.1 UniProtKB/TrEMBL
  ENSSSCT00070057793.1 UniProtKB/TrEMBL
  ENSSSCT00070057795.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TTC38 UniProtKB/TrEMBL
KEGG Report ssc:100518372 UniProtKB/TrEMBL
NCBI Gene TTC38 ENTREZGENE
PANTHER PTHR16263 UniProtKB/TrEMBL
  TETRATRICOPEPTIDE REPEAT PROTEIN 38 UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A287AH70_PIG UniProtKB/TrEMBL
  A0A287ANX1_PIG UniProtKB/TrEMBL
  A0A480V890 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W3T6_PIG UniProtKB/TrEMBL
  A0A4X1W4N0 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W4Z5_PIG UniProtKB/TrEMBL
  A0A8D0XRK8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0Z4W1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1DCG5_PIG UniProtKB/TrEMBL
  A0A8D1DCJ5_PIG UniProtKB/TrEMBL
  A0A8D1MX66_PIG UniProtKB/TrEMBL
  F1SM81 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94550 ENTREZGENE