Sugp2 (SURP and G-patch domain containing 2) - Rat Genome Database

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Gene: Sugp2 (SURP and G-patch domain containing 2) Chinchilla lanigera
Analyze
Symbol: Sugp2
Name: SURP and G-patch domain containing 2
RGD ID: 8725212
Description: ASSOCIATED WITH genetic disease (ortholog); Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ortholog); progressive myoclonus epilepsy 8 (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SURP and G patch domain containing 2; SURP and G-patch domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555242,710,656 - 2,732,203 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555242,710,656 - 2,731,849 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Sugp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555242,710,656 - 2,732,203 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555242,710,656 - 2,731,849 (+)NCBIChiLan1.0ChiLan1.0
SUGP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381918,990,887 - 19,033,844 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1918,990,888 - 19,034,023 (-)EnsemblGRCh38hg38GRCh38
GRCh371919,101,696 - 19,144,653 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361918,962,702 - 19,005,368 (-)NCBINCBI36Build 36hg18NCBI36
Celera1919,006,510 - 19,049,196 (-)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1918,665,852 - 18,708,164 (-)NCBIHuRef
CHM1_11919,101,376 - 19,144,068 (-)NCBICHM1_1
T2T-CHM13v2.01919,126,690 - 19,169,638 (-)NCBIT2T-CHM13v2.0
Sugp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39870,686,838 - 70,715,755 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl870,686,876 - 70,732,565 (+)EnsemblGRCm39 Ensembl
GRCm38870,234,188 - 70,263,105 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,234,226 - 70,279,915 (+)EnsemblGRCm38mm10GRCm38
MGSCv37872,758,125 - 72,787,004 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36873,163,222 - 73,192,094 (+)NCBIMGSCv36mm8
Celera872,790,767 - 72,819,602 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.15NCBI
Sugp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81619,193,910 - 19,225,364 (-)NCBIGRCr8
mRatBN7.21619,159,951 - 19,191,412 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1619,164,767 - 19,191,340 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1619,201,651 - 19,231,064 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01620,334,130 - 20,363,498 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01619,254,612 - 19,284,024 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01620,908,162 - 20,939,574 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,910,177 - 20,939,545 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,758,637 - 20,789,858 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,644,374 - 19,673,741 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11619,655,740 - 19,674,045 (-)NCBI
Celera1619,350,650 - 19,380,138 (-)NCBICelera
Cytogenetic Map16p14NCBI
SUGP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22023,852,334 - 23,895,251 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11922,858,554 - 22,901,489 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01918,429,029 - 18,471,958 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11919,433,192 - 19,468,116 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1919,436,661 - 19,473,103 (-)Ensemblpanpan1.1panPan2
SUGP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12044,097,273 - 44,132,846 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2044,097,405 - 44,129,842 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2044,013,862 - 44,074,420 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02044,585,313 - 44,645,936 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2044,585,341 - 44,616,886 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12043,822,645 - 43,883,224 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02044,231,940 - 44,292,950 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02044,507,596 - 44,568,645 (+)NCBIUU_Cfam_GSD_1.0
Sugp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118202,791,918 - 202,826,616 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365962,340,640 - 2,375,773 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365962,341,103 - 2,375,755 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUGP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl258,828,251 - 58,865,852 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1258,828,009 - 58,865,859 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2258,626,985 - 58,664,673 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SUGP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1617,453,085 - 17,496,161 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl617,455,840 - 17,492,313 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660741,826,009 - 1,870,605 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sugp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249081,990,622 - 2,012,965 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249081,991,529 - 2,013,694 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000016708   ⟹   ENSCLAP00000016544
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555242,710,656 - 2,732,203 (+)Ensembl
RefSeq Acc Id: XM_013507220   ⟹   XP_013362674
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555242,710,656 - 2,731,849 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013362674 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000016544
  ENSCLAP00000016544.1
Reference Protein Sequences
RefSeq Acc Id: XP_013362674   ⟸   XM_013507220
- UniProtKB: A0A8C2VNI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000016544   ⟸   ENSCLAT00000016708
Protein Domains
G-patch   SURP motif


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011375 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000016708 ENTREZGENE
  ENSCLAT00000016708.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.790 UniProtKB/TrEMBL
InterPro G_patch_dom UniProtKB/TrEMBL
  SUGP1/2 UniProtKB/TrEMBL
  Surp UniProtKB/TrEMBL
  SWAP/Surp_sf UniProtKB/TrEMBL
NCBI Gene Sugp2 ENTREZGENE
PANTHER PTHR23340 UniProtKB/TrEMBL
  SURP AND G-PATCH DOMAIN-CONTAINING PROTEIN 1 ISOFORM X1 UniProtKB/TrEMBL
Pfam G-patch UniProtKB/TrEMBL
  Surp UniProtKB/TrEMBL
PROSITE G_PATCH UniProtKB/TrEMBL
  SURP UniProtKB/TrEMBL
SMART G_patch UniProtKB/TrEMBL
  SWAP UniProtKB/TrEMBL
Superfamily-SCOP SSF109905 UniProtKB/TrEMBL
UniProt A0A8C2VNI7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Sugp2  SURP and G-patch domain containing 2    SURP and G patch domain containing 2  Symbol and/or name change 5135510 APPROVED