Gtf3c4 (general transcription factor IIIC subunit 4) - Rat Genome Database

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Gene: Gtf3c4 (general transcription factor IIIC subunit 4) Chinchilla lanigera
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Symbol: Gtf3c4
Name: general transcription factor IIIC subunit 4
RGD ID: 8720314
Description: ENCODES a protein that exhibits histone H3K14 acetyltransferase activity (ortholog); RNA polymerase III general transcription initiation factor activity (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 14 (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog); transcription factor TFIIIC complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: general transcription factor 3C polypeptide 4; general transcription factor IIIC, polypeptide 4, 90kDa
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555132,037,312 - 2,054,451 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555132,037,312 - 2,054,451 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gtf3c4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555132,037,312 - 2,054,451 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555132,037,312 - 2,054,451 (+)NCBIChiLan1.0ChiLan1.0
GTF3C4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389132,670,035 - 132,694,955 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9132,670,035 - 132,694,953 (+)EnsemblGRCh38hg38GRCh38
GRCh379135,545,422 - 135,570,342 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369134,535,549 - 134,555,292 (+)NCBINCBI36Build 36hg18NCBI36
Build 349132,575,281 - 132,594,369NCBI
Celera9106,087,467 - 106,107,210 (+)NCBICelera
Cytogenetic Map9q34.13NCBI
HuRef9105,039,470 - 105,059,183 (+)NCBIHuRef
CHM1_19135,696,098 - 135,715,832 (+)NCBICHM1_1
T2T-CHM13v2.09144,881,255 - 144,906,173 (+)NCBIT2T-CHM13v2.0
Gtf3c4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39228,712,311 - 28,730,628 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl228,712,311 - 28,730,372 (-)EnsemblGRCm39 Ensembl
GRCm38228,822,299 - 28,840,360 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl228,822,299 - 28,840,360 (-)EnsemblGRCm38mm10GRCm38
MGSCv37228,677,819 - 28,695,880 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36228,647,584 - 28,662,295 (-)NCBIMGSCv36mm8
Celera228,528,198 - 28,546,259 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map219.38NCBI
Gtf3c4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8332,552,773 - 32,570,705 (-)NCBIGRCr8
mRatBN7.2312,154,803 - 12,172,795 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl312,154,805 - 12,172,725 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx315,230,694 - 15,245,761 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0323,815,662 - 23,830,729 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0322,070,107 - 22,085,174 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.037,404,857 - 7,422,779 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl37,404,841 - 7,422,738 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0312,752,411 - 12,773,005 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.437,834,130 - 7,849,247 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera36,937,372 - 6,952,433 (-)NCBICelera
Cytogenetic Map3p12NCBI
GTF3C4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2116,664,038 - 6,688,453 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan196,666,376 - 6,690,797 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09103,787,645 - 103,812,319 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19132,418,347 - 132,443,106 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9132,418,653 - 132,437,082 (+)Ensemblpanpan1.1panPan2
GTF3C4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1951,602,025 - 51,630,139 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl951,606,235 - 51,630,637 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha950,866,756 - 50,894,811 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0952,496,896 - 52,523,099 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl952,501,105 - 52,523,084 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1951,275,219 - 51,303,083 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0951,599,742 - 51,627,625 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0951,679,349 - 51,707,219 (-)NCBIUU_Cfam_GSD_1.0
Gtf3c4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947199,415,069 - 199,433,889 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648719,183,596 - 19,202,407 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GTF3C4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1272,454,503 - 272,479,952 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11272,454,488 - 272,479,968 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21306,486,784 - 306,512,281 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GTF3C4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1125,447,644 - 5,468,043 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl125,448,494 - 5,468,334 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607910,171,044 - 10,196,467 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gtf3c4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247603,673,769 - 3,692,407 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247603,666,442 - 3,692,077 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000014556   ⟹   ENSCLAP00000014398
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555132,037,312 - 2,054,451 (+)Ensembl
RefSeq Acc Id: XM_005408381   ⟹   XP_005408438
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555132,037,312 - 2,054,451 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005408438 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000014398
  ENSCLAP00000014398.1
RefSeq Acc Id: XP_005408438   ⟸   XM_005408381
- UniProtKB: A0A8C2VEJ4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000014398   ⟸   ENSCLAT00000014556
Protein Domains
DUF5921   Transcription factor IIIC 90kDa subunit N-terminal   Transcription factor IIIC putative zinc-finger


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009930 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000014556 ENTREZGENE
  ENSCLAT00000014556.1 UniProtKB/TrEMBL
InterPro DUF5921 UniProtKB/TrEMBL
  GTF3C4 UniProtKB/TrEMBL
  TFIIIC_delta_N UniProtKB/TrEMBL
  TFIIIC_Znf UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Gtf3c4 ENTREZGENE
PANTHER GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4 UniProtKB/TrEMBL
  PTHR15496 UniProtKB/TrEMBL
Pfam DUF5921 UniProtKB/TrEMBL
  TFIIIC_delta UniProtKB/TrEMBL
  zf-TFIIIC UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A8C2VEJ4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Gtf3c4  general transcription factor IIIC subunit 4    general transcription factor IIIC, polypeptide 4, 90kDa  Symbol and/or name change 5135510 APPROVED