Gtf3c4 (general transcription factor IIIC subunit 4) - Rat Genome Database

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Gene: Gtf3c4 (general transcription factor IIIC subunit 4) Heterocephalus glaber
Analyze
Symbol: Gtf3c4
Name: general transcription factor IIIC subunit 4
RGD ID: 18925236
Description: ENCODES a protein that exhibits RNA polymerase III general transcription initiation factor activity (ortholog); INVOLVED IN chromatin remodeling (inferred); transcription initiation at RNA polymerase III promoter (inferred); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH developmental and epileptic encephalopathy 14 (ortholog); Ehlers-Danlos syndrome classic type 1 (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: General transcription factor 3C polypeptide 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247603,673,769 - 3,692,407 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247603,666,442 - 3,692,077 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gtf3c4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247603,673,769 - 3,692,407 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247603,666,442 - 3,692,077 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GTF3C4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389132,670,035 - 132,694,955 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9132,670,035 - 132,694,953 (+)EnsemblGRCh38hg38GRCh38
GRCh379135,545,422 - 135,570,342 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369134,535,549 - 134,555,292 (+)NCBINCBI36Build 36hg18NCBI36
Build 349132,575,281 - 132,594,369NCBI
Celera9106,087,467 - 106,107,210 (+)NCBICelera
Cytogenetic Map9q34.13NCBI
HuRef9105,039,470 - 105,059,183 (+)NCBIHuRef
CHM1_19135,696,098 - 135,715,832 (+)NCBICHM1_1
T2T-CHM13v2.09144,881,255 - 144,906,173 (+)NCBIT2T-CHM13v2.0
Gtf3c4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39228,712,311 - 28,730,628 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl228,712,311 - 28,730,372 (-)EnsemblGRCm39 Ensembl
GRCm38228,822,299 - 28,840,360 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl228,822,299 - 28,840,360 (-)EnsemblGRCm38mm10GRCm38
MGSCv37228,677,819 - 28,695,880 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36228,647,584 - 28,662,295 (-)NCBIMGSCv36mm8
Celera228,528,198 - 28,546,259 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map219.38NCBI
Gtf3c4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8332,552,773 - 32,570,705 (-)NCBIGRCr8
mRatBN7.2312,154,803 - 12,172,795 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl312,154,805 - 12,172,725 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx315,230,694 - 15,245,761 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0323,815,662 - 23,830,729 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0322,070,107 - 22,085,174 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.037,404,857 - 7,422,779 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl37,404,841 - 7,422,738 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0312,752,411 - 12,773,005 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.437,834,130 - 7,849,247 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera36,937,372 - 6,952,433 (-)NCBICelera
Cytogenetic Map3p12NCBI
Gtf3c4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555132,037,312 - 2,054,451 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555132,037,312 - 2,054,451 (+)NCBIChiLan1.0ChiLan1.0
GTF3C4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2116,664,038 - 6,688,453 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan196,666,376 - 6,690,797 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09103,787,645 - 103,812,319 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19132,418,347 - 132,443,106 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9132,418,653 - 132,437,082 (+)Ensemblpanpan1.1panPan2
GTF3C4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1951,602,025 - 51,630,139 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl951,606,235 - 51,630,637 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha950,866,756 - 50,894,811 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0952,496,896 - 52,523,099 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl952,501,105 - 52,523,084 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1951,275,219 - 51,303,083 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0951,599,742 - 51,627,625 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0951,679,349 - 51,707,219 (-)NCBIUU_Cfam_GSD_1.0
Gtf3c4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947199,415,069 - 199,433,889 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648719,183,596 - 19,202,407 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GTF3C4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1272,454,503 - 272,479,952 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11272,454,488 - 272,479,968 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21306,486,784 - 306,512,281 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GTF3C4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1125,447,644 - 5,468,043 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl125,448,494 - 5,468,334 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607910,171,044 - 10,196,467 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000016795   ⟹   ENSHGLP00000016625
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247603,673,769 - 3,692,407 (-)Ensembl
RefSeq Acc Id: XM_004849052   ⟹   XP_004849109
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247603,668,418 - 3,692,071 (-)NCBI
RefSeq Acc Id: XM_021261807   ⟹   XP_021117466
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247603,666,442 - 3,692,077 (-)NCBI
RefSeq Acc Id: XM_021261809   ⟹   XP_021117468
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247603,674,347 - 3,692,074 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004849109 (Get FASTA)   NCBI Sequence Viewer  
  XP_021117466 (Get FASTA)   NCBI Sequence Viewer  
  XP_021117468 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB00202 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000016625
GenBank Protein JAN99104 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021117466   ⟸   XM_021261807
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JEP8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004849109   ⟸   XM_004849052
- Peptide Label: isoform X2
- UniProtKB: G5AT41 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021117468   ⟸   XM_021261809
- Peptide Label: isoform X3
- UniProtKB: A0A0P6JEP8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000016625   ⟸   ENSHGLT00000016795


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011891 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000016795 ENTREZGENE
InterPro DUF5921 UniProtKB/TrEMBL
  GTF3C4 UniProtKB/TrEMBL
  TFIIIC_delta_N UniProtKB/TrEMBL
  TFIIIC_Znf UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Gtf3c4 ENTREZGENE
PANTHER GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4 UniProtKB/TrEMBL
  PTHR15496 UniProtKB/TrEMBL
Pfam DUF5921 UniProtKB/TrEMBL
  TFIIIC_delta UniProtKB/TrEMBL
  zf-TFIIIC UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A0P6JEP8 ENTREZGENE, UniProtKB/TrEMBL
  G5AT41 ENTREZGENE, UniProtKB/TrEMBL