Ppp2r1a (protein phosphatase 2 scaffold subunit Aalpha) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ppp2r1a (protein phosphatase 2 scaffold subunit Aalpha) Chinchilla lanigera
Analyze
Symbol: Ppp2r1a
Name: protein phosphatase 2 scaffold subunit Aalpha
RGD ID: 8719720
Description: ENCODES a protein that exhibits protein antigen binding (ortholog); protein heterodimerization activity (ortholog); protein serine/threonine phosphatase activity (ortholog); INVOLVED IN chromosome segregation (ortholog); female meiotic nuclear division (ortholog); meiotic sister chromatid cohesion, centromeric (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase-Akt signaling pathway; platelet-derived growth factor signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); autosomal dominant intellectual developmental disorder 36 (ortholog); FOUND IN chromosome, centromeric region (ortholog); cytosol (ortholog); FAR/SIN/STRIPAK complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955558381,794 - 410,485 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955558381,794 - 410,485 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ppp2r1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955558381,794 - 410,485 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955558381,794 - 410,485 (+)NCBIChiLan1.0ChiLan1.0
PPP2R1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381952,190,052 - 52,229,518 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1952,170,936 - 52,229,518 (+)EnsemblGRCh38hg38GRCh38
GRCh371952,693,305 - 52,732,771 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361957,385,046 - 57,421,483 (+)NCBINCBI36Build 36hg18NCBI36
Build 341957,385,045 - 57,421,482NCBI
Celera1949,742,609 - 49,779,232 (+)NCBICelera
Cytogenetic Map19q13.41NCBI
HuRef1949,023,481 - 49,060,103 (+)NCBIHuRef
CHM1_11952,694,941 - 52,731,564 (+)NCBICHM1_1
T2T-CHM13v2.01955,277,246 - 55,316,713 (+)NCBIT2T-CHM13v2.0
Ppp2r1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391721,165,716 - 21,186,167 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1721,165,573 - 21,186,178 (+)EnsemblGRCm39 Ensembl
GRCm381720,945,454 - 20,965,905 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1720,945,311 - 20,965,916 (+)EnsemblGRCm38mm10GRCm38
MGSCv371721,082,418 - 21,102,869 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361720,650,151 - 20,670,602 (+)NCBIMGSCv36mm8
Celera1721,977,995 - 21,998,451 (+)NCBICelera
Cytogenetic Map17A3.2NCBI
cM Map1711.4NCBI
Ppp2r1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8169,213,198 - 69,232,441 (+)NCBIGRCr8
mRatBN7.2160,540,223 - 60,559,467 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl160,540,194 - 60,560,129 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx165,329,720 - 65,348,961 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0174,024,287 - 74,043,556 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0167,239,755 - 67,258,997 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0160,717,386 - 60,736,629 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl160,717,386 - 60,736,609 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0161,883,998 - 61,903,241 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4158,442,220 - 58,461,462 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1158,458,861 - 58,463,770 (+)NCBI
Celera156,683,597 - 56,702,854 (+)NCBICelera
Cytogenetic Map1q12NCBI
PPP2R1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22058,232,259 - 58,268,655 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11960,156,718 - 60,193,105 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01949,133,295 - 49,169,447 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11958,011,383 - 58,047,577 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1958,011,383 - 58,047,577 (+)Ensemblpanpan1.1panPan2
PPP2R1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11104,974,059 - 105,013,745 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1104,974,072 - 105,013,663 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1104,546,959 - 104,586,647 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01105,482,896 - 105,522,584 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1105,481,754 - 105,522,572 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11105,155,353 - 105,195,079 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01104,809,802 - 104,849,707 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01105,597,164 - 105,636,892 (-)NCBIUU_Cfam_GSD_1.0
Ppp2r1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093493,866,510 - 3,896,513 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936901622,888 - 653,044 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936901622,893 - 653,044 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP2R1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl657,921,329 - 57,964,961 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1657,929,520 - 57,964,948 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2652,233,180 - 52,268,640 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PPP2R1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1644,990,402 - 45,026,210 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl644,990,367 - 45,026,227 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607325,047,701 - 25,083,506 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp2r1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248322,979,320 - 3,011,715 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248322,979,270 - 3,009,189 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000002461   ⟹   ENSCLAP00000002410
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955558381,794 - 410,485 (+)Ensembl
RefSeq Acc Id: XM_005412660   ⟹   XP_005412717
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955558381,794 - 410,485 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005412717 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000002410
  ENSCLAP00000002410.1
RefSeq Acc Id: XP_005412717   ⟸   XM_005412660
- UniProtKB: A0A8C2YJ41 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000002410   ⟸   ENSCLAT00000002461


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001749 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000002461 ENTREZGENE
  ENSCLAT00000002461.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  HEAT UniProtKB/TrEMBL
  HEAT_type_2 UniProtKB/TrEMBL
  PP2A_Regulatory_Subunit_A UniProtKB/TrEMBL
NCBI Gene LOC102004524 ENTREZGENE
PANTHER PTHR10648:SF2 UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT UniProtKB/TrEMBL
Pfam HEAT UniProtKB/TrEMBL
  HEAT_2 UniProtKB/TrEMBL
  PPP2R1A-like_HEAT UniProtKB/TrEMBL
PROSITE HEAT_REPEAT UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A8C2YJ41 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Ppp2r1a  protein phosphatase 2 scaffold subunit Aalpha    protein phosphatase 2, regulatory subunit A, alpha  Symbol and/or name change 5135510 APPROVED
2015-08-25 Ppp2r1a  protein phosphatase 2, regulatory subunit A, alpha  LOC102004524  serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like  Symbol and/or name change 5135510 APPROVED