Cep19 (centrosomal protein 19) - Rat Genome Database

Name: Cep19
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Cep19 (centrosomal protein 19) Chinchilla lanigera

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Symbol:

Cep19

Name:

centrosomal protein 19

RGD ID:

8701729

Description:

INVOLVED IN cilium assembly (ortholog); microtubule anchoring at centrosome (ortholog); vesicle targeting, trans-Golgi to periciliary membrane compartment (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Bardet-Biedl syndrome (ortholog); chromosome 3q29 microdeletion syndrome (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); ciliary basal body (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

centrosomal protein 19kDa; centrosomal protein of 19 kDa

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CEP19 (centrosomal protein 19)	NCBI	Ortholog
Mus musculus (house mouse):	Cep19 (centrosomal protein 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cep19 (centrosomal protein 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CEP19 (centrosomal protein 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CEP19 (centrosomal protein 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cep19 (centrosomal protein 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CEP19 (centrosomal protein 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CEP19 (centrosomal protein 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cep19 (centrosomal protein 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955420	12,823,889 - 12,825,337 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955420	12,823,663 - 12,829,598 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Bardet-Biedl syndrome (ISO)

chromosome 3q29 microdeletion syndrome (ISO)

Morbid Obesity and Spermatogenic Failure (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cilium assembly (ISO)

microtubule anchoring at centrosome (ISO)

vesicle targeting, trans-Golgi to periciliary membrane compartment (ISO)

Cellular Component

centriole (ISO)

centrosome (ISO)

ciliary basal body (ISO)

cilium (ISO)

nucleoplasm (ISO)

spindle pole (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Cep19
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955420	12,823,889 - 12,825,337 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955420	12,823,663 - 12,829,598 (-)	NCBI	ChiLan1.0	ChiLan1.0

CEP19
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	196,706,277 - 196,712,250 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	196,706,277 - 196,712,250 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	196,433,148 - 196,439,121 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	197,918,298 - 197,923,491 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Cytogenetic Map	3	q29	NCBI
HuRef	3	193,729,843 - 193,735,809 (-)	NCBI		HuRef
CHM1_1	3	196,404,344 - 196,410,314 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	199,425,670 - 199,431,642 (-)	NCBI		T2T-CHM13v2.0

Cep19
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	31,918,618 - 31,926,875 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	31,918,618 - 31,926,887 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	32,099,789 - 32,108,068 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	32,099,800 - 32,108,069 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	32,099,888 - 32,108,140 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	32,019,549 - 32,027,801 (+)	NCBI		MGSCv36	mm8
Celera	16	32,595,894 - 32,605,144 (+)	NCBI		Celera
Cytogenetic Map	16	B2	NCBI
cM Map	16	22.4	NCBI

Cep19
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	82,182,868 - 82,192,134 (-)	NCBI		GRCr8
mRatBN7.2	11	68,677,869 - 68,687,117 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	68,677,871 - 68,687,022 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	77,514,918 - 77,524,098 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	70,177,010 - 70,186,133 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	69,204,015 - 69,213,195 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	71,921,713 - 71,938,335 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	71,921,716 - 71,938,165 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	75,004,786 - 75,013,404 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	70,500,062 - 70,508,772 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	70,557,650 - 70,566,361 (-)	NCBI
Celera	11	68,100,332 - 68,109,479 (-)	NCBI		Celera
Cytogenetic Map	11	q22	NCBI

CEP19
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	194,576,245 - 194,582,255 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	194,580,964 - 194,586,972 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	194,050,519 - 194,056,524 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	203,990,477 - 203,996,486 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	203,988,092 - 203,996,486 (-)	Ensembl	panpan1.1		panPan2

CEP19
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	29,733,860 - 29,740,836 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	33	29,735,351 - 29,741,128 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	33	29,757,517 - 29,764,533 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	33	29,977,353 - 29,984,376 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	33	29,754,593 - 29,761,609 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	33	29,809,508 - 29,816,537 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	33	30,432,110 - 30,439,130 (-)	NCBI		UU_Cfam_GSD_1.0

Cep19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	124,595,931 - 124,601,054 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936784	1,283,886 - 1,289,965 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936784	1,284,215 - 1,289,362 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CEP19
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	133,420,032 - 133,428,390 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	133,420,017 - 133,428,394 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	143,068,624 - 143,074,817 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CEP19
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	90,514,147 - 90,519,580 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	90,514,438 - 90,521,380 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	64,298,556 - 64,305,151 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cep19
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	61,783,903 - 61,790,001 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	61,783,665 - 61,789,980 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005383140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005383141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01020897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01225980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000019635 ⟹ ENSCLAP00000019443

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955420	12,823,889 - 12,825,337 (-)	Ensembl

RefSeq Acc Id:

XM_005383140 ⟹ XP_005383197

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955420	12,823,663 - 12,829,598 (-)	NCBI

Sequence:

show sequence

GCTATTTCCACAGCTCCAGCCCCTCAGTGTGCTCTTGCGCCAAGCGGCGCAAGCGACGTGACGC
ACTTCCGGGGTGTTGCTATGGGAACGGCAGGGCACGCCCCCTCTGTAACTTTGCGGGGCTAGTA
GCACCGGAAGACGGTTTGCAGCTGTCCCTGCGATCTCCTCCTCTACCGCCGGGTGCTCCACCCC
ACCTTCACGTCAGCGGGCTGTGACTGTCGCCTCTGGCGTCAAAATCAATTTAAATGCTCCTCTG
TGCAATGCGGTTGAGTGGAAATAACGCTTTCTTGGAGATTTAGACGTTGGCCTGCAGGAGAAGA
TGCACTTTCTGGGTTTGTGTAAGGGAAATTACTATGCGGCTGACACATTTGCATCAGATTTCCT
GTGATTTATACCGAAATATATGTGAGAACGATGTGCACTGCCAAGAAATGTGGAATCAGATTCC
AGCCTCCAGCTATTATTTTAATTTATGAGAATGAAGTCAAGGGGAAGAATCGCCAGCGCATCAT
GCCAGTCCGAAACTTTTCCAAGTTCTCAGACTGCACCAGAGCTGCTGAACAATTAAAGAATAAT
CCGCGCCACAAGAGTTACCTGGAGGAGGTATCCCCAAAGCAGCTGGAGAAGCTGTTCACTCTTT
TACAAGGTCACTTGTGTGGACAGAGCCTGGCGGCAACGATGGAGCAAATTCAGCGGGAAACAGC
CATCGATCCTGAGGAAGACATGAACAAATTAGATGACAAGGAGCTTGCCAAAAGGAAGAGCATC
ATGGATGAACTCTTTGAGAAAAATCAGAAGAAGAAGGATGATCCAGATTTTGTGTATGACATCG
AGGTTGAGTTCGCACAGGATGAGCTGCAGTCCTGCGGCTGGGACACAGAGTCAGCTGACGAGTT
CTGACACCACACGCTCAACCAGGCCGGCAGGACGCCCATGTGTTTACAAGCAGCATAGACTGAT
TCTAGAAAAGTCTACCAAGAACCCTAAATGTATAGGTTGGGTCTTCAAACCAAGACATTTATAC
CTACTATGTAGGTGTATAAGAAATACAGGAAAGGGGCTGGGGATTTAGCTCAGCGGCAAAAAGC
GCCTGCCTGGCAAGCGCAAGGTCGTGAGTTCGGTTCCT

hide sequence

RefSeq Acc Id:

XM_005383141 ⟹ XP_005383198

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955420	12,823,663 - 12,829,598 (-)	NCBI

Sequence:

show sequence

GCTATTTCCACAGCTCCAGCCCCTCAGTGTGCTCTTGCGCCAAGCGGCGCAAGCGACGTGACGC
ACTTCCGGGGTGTTGCTATGGGAACGGCAGGGCACGCCCCCTCTGTAACTTTGCGGGGCTAGTA
GCACCGGAAGACGGTTTGCAGCTGTCCCTGCGATCTCCTCCTCTACCGCCGGGTGCTCCACCCC
ACCTTCACGTCAGCGGGCTGTGACTGTCGCCTCTGGCGTCAAAATCAATTTAAATGCTCCTCTG
TGCAATGCGGTTGAGTGGAAATAACGCTTTCTTGGAGATTTAGACGTTGGCCTGCAGGAGAAGA
TGCACTTTCTGGGTTTGTGTAAGGCAGGAAATTACTATGCGGCTGACACATTTGCATCAGATTT
CCTGTGATTTATACCGAAATATATGTGAGAACGATGTGCACTGCCAAGAAATGTGGAATCAGAT
TCCAGCCTCCAGCTATTATTTTAATTTATGAGAATGAAGTCAAGGGGAAGAATCGCCAGCGCAT
CATGCCAGTCCGAAACTTTTCCAAGTTCTCAGACTGCACCAGAGCTGCTGAACAATTAAAGAAT
AATCCGCGCCACAAGAGTTACCTGGAGGAGGTATCCCCAAAGCAGCTGGAGAAGCTGTTCACTC
TTTTACAAGGTCACTTGTGTGGACAGAGCCTGGCGGCAACGATGGAGCAAATTCAGCGGGAAAC
AGCCATCGATCCTGAGGAAGACATGAACAAATTAGATGACAAGGAGCTTGCCAAAAGGAAGAGC
ATCATGGATGAACTCTTTGAGAAAAATCAGAAGAAGAAGGATGATCCAGATTTTGTGTATGACA
TCGAGGTTGAGTTCGCACAGGATGAGCTGCAGTCCTGCGGCTGGGACACAGAGTCAGCTGACGA
GTTCTGACACCACACGCTCAACCAGGCCGGCAGGACGCCCATGTGTTTACAAGCAGCATAGACT
GATTCTAGAAAAGTCTACCAAGAACCCTAAATGTATAGGTTGGGTCTTCAAACCAAGACATTTA
TACCTACTATGTAGGTGTATAAGAAATACAGGAAAGGGGCTGGGGATTTAGCTCAGCGGCAAAA
AGCGCCTGCCTGGCAAGCGCAAGGTCGTGAGTTCGGTTCCT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005383197	(Get FASTA)	NCBI Sequence Viewer
	XP_005383198	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000019443
	ENSCLAP00000019443.1

RefSeq Acc Id:	XP_005383197 ⟸ XM_005383140
- UniProtKB:	A0A8C2VR77 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCTAKKCGIRFQPPAIILIYENEVKGKNRQRIMPVRNFSKFSDCTRAAEQLKNNPRHKSYLEEV SPKQLEKLFTLLQGHLCGQSLAATMEQIQRETAIDPEEDMNKLDDKELAKRKSIMDELFEKNQK KKDDPDFVYDIEVEFAQDELQSCGWDTESADEF hide sequence

RefSeq Acc Id:	XP_005383198 ⟸ XM_005383141
- UniProtKB:	A0A8C2VR77 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCTAKKCGIRFQPPAIILIYENEVKGKNRQRIMPVRNFSKFSDCTRAAEQLKNNPRHKSYLEEV SPKQLEKLFTLLQGHLCGQSLAATMEQIQRETAIDPEEDMNKLDDKELAKRKSIMDELFEKNQK KKDDPDFVYDIEVEFAQDELQSCGWDTESADEF hide sequence

Ensembl Acc Id:

ENSCLAP00000019443 ⟸ ENSCLAT00000019635

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000013341	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000019635	ENTREZGENE
	ENSCLAT00000019635.1	UniProtKB/TrEMBL
InterPro	CEP19	UniProtKB/TrEMBL
NCBI Gene	Cep19	ENTREZGENE
PANTHER	CENTROSOMAL PROTEIN OF 19 KDA	UniProtKB/TrEMBL
	PTHR31539	UniProtKB/TrEMBL
Pfam	CEP19	UniProtKB/TrEMBL
UniProt	A0A8C2VR77	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Cep19	centrosomal protein 19		centrosomal protein 19kDa	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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