Cep19 (centrosomal protein 19) - Rat Genome Database

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Gene: Cep19 (centrosomal protein 19) Ictidomys tridecemlineatus
Analyze
Symbol: Cep19
Name: centrosomal protein 19
RGD ID: 12589494
Description: INVOLVED IN cilium assembly (inferred); microtubule anchoring at centrosome (inferred); vesicle targeting, trans-Golgi to periciliary membrane compartment (inferred); ASSOCIATED WITH autistic disorder (ortholog); Bardet-Biedl syndrome (ortholog); chromosome 3q29 microdeletion syndrome (ortholog); FOUND IN cell projection (inferred); centriole (inferred); centrosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: centrosomal protein of 19 kDa
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602124,595,931 - 124,601,054 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367841,283,886 - 1,289,965 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367841,284,215 - 1,289,362 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cep19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602124,595,931 - 124,601,054 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367841,283,886 - 1,289,965 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367841,284,215 - 1,289,362 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383196,706,277 - 196,712,250 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3196,706,277 - 196,712,250 (-)EnsemblGRCh38hg38GRCh38
GRCh373196,433,148 - 196,439,121 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363197,918,298 - 197,923,491 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map3q29NCBI
HuRef3193,729,843 - 193,735,809 (-)NCBIHuRef
CHM1_13196,404,344 - 196,410,314 (-)NCBICHM1_1
T2T-CHM13v2.03199,425,670 - 199,431,642 (-)NCBIT2T-CHM13v2.0
Cep19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391631,918,618 - 31,926,875 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1631,918,618 - 31,926,887 (+)EnsemblGRCm39 Ensembl
GRCm381632,099,789 - 32,108,068 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1632,099,800 - 32,108,069 (+)EnsemblGRCm38mm10GRCm38
MGSCv371632,099,888 - 32,108,140 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361632,019,549 - 32,027,801 (+)NCBIMGSCv36mm8
Celera1632,595,894 - 32,605,144 (+)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1622.4NCBI
Cep19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81182,182,868 - 82,192,134 (-)NCBIGRCr8
mRatBN7.21168,677,869 - 68,687,117 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1168,677,871 - 68,687,022 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1177,514,918 - 77,524,098 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01170,177,010 - 70,186,133 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01169,204,015 - 69,213,195 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01171,921,713 - 71,938,335 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1171,921,716 - 71,938,165 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01175,004,786 - 75,013,404 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41170,500,062 - 70,508,772 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11170,557,650 - 70,566,361 (-)NCBI
Celera1168,100,332 - 68,109,479 (-)NCBICelera
Cytogenetic Map11q22NCBI
Cep19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542012,823,889 - 12,825,337 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542012,823,663 - 12,829,598 (-)NCBIChiLan1.0ChiLan1.0
CEP19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22194,576,245 - 194,582,255 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13194,580,964 - 194,586,972 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03194,050,519 - 194,056,524 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13203,990,477 - 203,996,486 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3203,988,092 - 203,996,486 (-)Ensemblpanpan1.1panPan2
CEP19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13329,733,860 - 29,740,836 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3329,735,351 - 29,741,128 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3329,757,517 - 29,764,533 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03329,977,353 - 29,984,376 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13329,754,593 - 29,761,609 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03329,809,508 - 29,816,537 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03330,432,110 - 30,439,130 (-)NCBIUU_Cfam_GSD_1.0
CEP19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13133,420,032 - 133,428,390 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113133,420,017 - 133,428,394 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213143,068,624 - 143,074,817 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEP19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11590,514,147 - 90,519,580 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1590,514,438 - 90,521,380 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604164,298,556 - 64,305,151 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cep19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473061,783,903 - 61,790,001 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473061,783,665 - 61,789,980 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000004205   ⟹   ENSSTOP00000003777
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367841,283,886 - 1,289,965 (-)Ensembl
RefSeq Acc Id: XM_005340290   ⟹   XP_005340347
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602124,595,931 - 124,601,054 (+)NCBI
SpeTri2.0NW_0049367841,284,215 - 1,289,362 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013365183   ⟹   XP_013220637
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602124,595,931 - 124,601,054 (+)NCBI
SpeTri2.0NW_0049367841,284,215 - 1,289,362 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005340347 (Get FASTA)   NCBI Sequence Viewer  
  XP_013220637 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003777.2
RefSeq Acc Id: XP_005340347   ⟸   XM_005340290
- UniProtKB: I3M3T3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013220637   ⟸   XM_013365183
- UniProtKB: I3M3T3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000003777   ⟸   ENSSTOT00000004205


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004214 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004205.3 UniProtKB/TrEMBL
InterPro CEP19 UniProtKB/TrEMBL
NCBI Gene Cep19 ENTREZGENE
PANTHER CENTROSOMAL PROTEIN OF 19 KDA UniProtKB/TrEMBL
  PTHR31539 UniProtKB/TrEMBL
Pfam CEP19 UniProtKB/TrEMBL
UniProt I3M3T3 ENTREZGENE, UniProtKB/TrEMBL