Cep19 (centrosomal protein 19) - Rat Genome Database

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Gene: Cep19 (centrosomal protein 19) Ictidomys tridecemlineatus
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Symbol: Cep19
Name: centrosomal protein 19
RGD ID: 12589494
Description: INVOLVED IN cell projection organization (inferred); cilium assembly (inferred); microtubule anchoring at centrosome (inferred); ASSOCIATED WITH autistic disorder (ortholog); Bardet-Biedl syndrome (ortholog); chromosome 3q29 microdeletion syndrome (ortholog); FOUND IN centriole (inferred); centrosome (inferred); ciliary basal body (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: centrosomal protein of 19 kDa
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602124,595,931 - 124,601,054 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367841,283,886 - 1,289,965 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367841,284,215 - 1,289,362 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cep19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602124,595,931 - 124,601,054 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367841,283,886 - 1,289,965 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367841,284,215 - 1,289,362 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383196,706,277 - 196,712,250 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3196,706,277 - 196,712,250 (-)EnsemblGRCh38hg38GRCh38
GRCh373196,433,148 - 196,439,121 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363197,918,298 - 197,923,491 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map3q29NCBI
HuRef3193,729,843 - 193,735,809 (-)NCBIHuRef
CHM1_13196,404,344 - 196,410,314 (-)NCBICHM1_1
T2T-CHM13v2.03199,425,670 - 199,431,642 (-)NCBIT2T-CHM13v2.0
Cep19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391631,918,618 - 31,926,875 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1631,918,618 - 31,926,887 (+)EnsemblGRCm39 Ensembl
GRCm381632,099,789 - 32,108,068 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1632,099,800 - 32,108,069 (+)EnsemblGRCm38mm10GRCm38
MGSCv371632,099,888 - 32,108,140 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361632,019,549 - 32,027,801 (+)NCBIMGSCv36mm8
Celera1632,595,894 - 32,605,144 (+)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1622.4NCBI
Cep19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81182,182,868 - 82,192,134 (-)NCBIGRCr8
mRatBN7.21168,677,869 - 68,687,117 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1168,677,871 - 68,687,022 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1177,514,918 - 77,524,098 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01170,177,010 - 70,186,133 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01169,204,015 - 69,213,195 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01171,921,713 - 71,938,335 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1171,921,716 - 71,938,165 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01175,004,786 - 75,013,404 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41170,500,062 - 70,508,772 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11170,557,650 - 70,566,361 (-)NCBI
Celera1168,100,332 - 68,109,479 (-)NCBICelera
Cytogenetic Map11q22NCBI
Cep19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542012,823,889 - 12,825,337 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542012,823,663 - 12,829,598 (-)NCBIChiLan1.0ChiLan1.0
CEP19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22194,576,245 - 194,582,255 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13194,580,964 - 194,586,972 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03194,050,519 - 194,056,524 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13203,990,477 - 203,996,486 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3203,988,092 - 203,996,486 (-)Ensemblpanpan1.1panPan2
CEP19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13329,733,860 - 29,740,836 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3329,735,351 - 29,741,128 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3329,757,517 - 29,764,533 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03329,977,353 - 29,984,376 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13329,754,593 - 29,761,609 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03329,809,508 - 29,816,537 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03330,432,110 - 30,439,130 (-)NCBIUU_Cfam_GSD_1.0
CEP19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13133,420,032 - 133,428,390 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113133,420,017 - 133,428,394 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213143,068,624 - 143,074,817 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEP19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11590,514,147 - 90,519,580 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1590,514,438 - 90,521,380 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604164,298,556 - 64,305,151 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cep19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473061,783,903 - 61,790,001 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473061,783,665 - 61,789,980 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000004205   ⟹   ENSSTOP00000003777
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367841,283,886 - 1,289,965 (-)Ensembl
RefSeq Acc Id: XM_005340290   ⟹   XP_005340347
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602124,595,931 - 124,601,054 (+)NCBI
SpeTri2.0NW_0049367841,284,215 - 1,289,362 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013365183   ⟹   XP_013220637
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602124,595,931 - 124,601,054 (+)NCBI
SpeTri2.0NW_0049367841,284,215 - 1,289,362 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005340347 (Get FASTA)   NCBI Sequence Viewer  
  XP_013220637 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003777.2
RefSeq Acc Id: XP_005340347   ⟸   XM_005340290
- UniProtKB: I3M3T3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013220637   ⟸   XM_013365183
- UniProtKB: I3M3T3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000003777   ⟸   ENSSTOT00000004205


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004214 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004205.3 UniProtKB/TrEMBL
InterPro CEP19 UniProtKB/TrEMBL
NCBI Gene Cep19 ENTREZGENE
PANTHER CENTROSOMAL PROTEIN OF 19 KDA UniProtKB/TrEMBL
  PTHR31539 UniProtKB/TrEMBL
Pfam CEP19 UniProtKB/TrEMBL
UniProt I3M3T3 ENTREZGENE, UniProtKB/TrEMBL