Cdh12 (cadherin 12) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Cdh12 (cadherin 12) Chinchilla lanigera
Analyze
Symbol: Cdh12
Name: cadherin 12
RGD ID: 8700638
Description: ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); Prostatic Neoplasms (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cadherin 12, type 2 (N-cadherin 2); cadherin-12
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554269,651,959 - 10,059,415 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554269,652,418 - 10,610,762 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cdh12ChinchillaNeurodevelopmental Disorders  ISOCDH12 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cdh12ChinchillaProstatic Neoplasms  ISOCDH12 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:29662167


#
Reference Title
Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
PMID:22301074   PMID:30032202  



Cdh12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554269,651,959 - 10,059,415 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554269,652,418 - 10,610,762 (-)NCBIChiLan1.0ChiLan1.0
CDH12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38521,750,673 - 22,853,344 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl521,750,673 - 22,853,344 (-)EnsemblGRCh38hg38GRCh38
GRCh37521,750,782 - 22,853,453 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36521,786,911 - 22,889,488 (-)NCBINCBI36Build 36hg18NCBI36
Build 34521,786,910 - 22,889,488NCBI
Celera521,615,397 - 22,740,089 (-)NCBICelera
Cytogenetic Map5p14.3NCBI
HuRef521,604,798 - 22,819,780 (-)NCBIHuRef
CHM1_1521,750,833 - 22,853,585 (-)NCBICHM1_1
T2T-CHM13v2.0521,857,991 - 22,961,025 (-)NCBIT2T-CHM13v2.0
Cdh12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391520,448,967 - 21,598,668 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1520,449,351 - 21,589,619 (+)EnsemblGRCm39 Ensembl
GRCm381520,448,878 - 21,598,421 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1520,449,265 - 21,589,533 (+)EnsemblGRCm38mm10GRCm38
MGSCv371521,041,207 - 21,519,288 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361521,056,177 - 21,534,258 (+)NCBIMGSCv36mm8
Celera1522,028,455 - 22,369,031 (+)NCBICelera
Cytogenetic Map15A2NCBI
cM Map158.25NCBI
Cdh12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8272,201,859 - 73,436,039 (+)NCBIGRCr8
mRatBN7.2270,474,679 - 71,705,369 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl270,475,043 - 71,700,572 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0271,310,228 - 72,540,063 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl272,006,099 - 72,540,263 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0291,039,561 - 92,271,682 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4272,175,690 - 72,598,944 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera266,295,278 - 67,494,155 (+)NCBICelera
Cytogenetic Map2q22NCBI
CDH12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2487,502,309 - 88,605,663 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1585,655,954 - 86,759,309 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0588,532,493 - 88,636,522 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1594,143,751 - 94,269,418 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl594,160,742 - 94,268,811 (+)Ensemblpanpan1.1panPan2
CDH12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1482,501,335 - 83,124,378 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl482,875,494 - 83,123,473 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha481,810,642 - 82,766,572 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0482,774,803 - 83,742,031 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl483,327,616 - 83,741,351 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1482,308,589 - 83,268,674 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0482,561,447 - 83,521,372 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0483,263,631 - 84,299,820 (+)NCBIUU_Cfam_GSD_1.0
Cdh12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213214,331,894 - 215,268,682 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936775516,237 - 789,589 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936775515,504 - 789,575 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDH12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl169,985,126 - 10,384,663 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1169,985,759 - 10,975,489 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21610,811,499 - 11,212,363 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDH12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1421,183,585 - 22,272,005 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660646,125,823 - 7,234,642 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

.





1 to 26 of 26 rows
RefSeq Transcripts XM_005386141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01026253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01026254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01026255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01026256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01026257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01026258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01026259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01026260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01026261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01026262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01026263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01026264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01026265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01026266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01026267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01026268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01026269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01026270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01026271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01026272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01026273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01026274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01026275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01026276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDK01336238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 26 of 26 rows

Ensembl Acc Id: ENSCLAT00000019912   ⟹   ENSCLAP00000019719
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554269,651,959 - 10,059,415 (-)Ensembl
RefSeq Acc Id: XM_005386141   ⟹   XP_005386198
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554269,652,418 - 10,610,762 (-)NCBI
Sequence:
Protein RefSeqs XP_005386198 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000019719
  ENSCLAP00000019719.1
RefSeq Acc Id: XP_005386198   ⟸   XM_005386141
- UniProtKB: A0A8C2VRV0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000019719   ⟸   ENSCLAT00000019912
Cadherin



1 to 22 of 22 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCLAG00000013527 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019912 ENTREZGENE
  ENSCLAT00000019912.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.900.10 UniProtKB/TrEMBL
  Cadherins UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/TrEMBL
  Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_cytoplasmic-dom UniProtKB/TrEMBL
  Catenin-bd_sf UniProtKB/TrEMBL
NCBI Gene Cdh12 ENTREZGENE
PANTHER CADHERIN-12 UniProtKB/TrEMBL
  PTHR24027 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_C UniProtKB/TrEMBL
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/TrEMBL
UniProt A0A8C2VRV0 ENTREZGENE, UniProtKB/TrEMBL
1 to 22 of 22 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Cdh12  cadherin 12    cadherin 12, type 2 (N-cadherin 2)  Symbol and/or name change 5135510 APPROVED