LOC102549494 (uncharacterized LOC102549494)

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Gene: LOC102549494 (uncharacterized LOC102549494) Rattus norvegicus

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Symbol:

LOC102549494

Name:

uncharacterized LOC102549494

RGD ID:

7508871

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	10,018,873 - 10,045,684 (+)	NCBI		GRCr8
mRatBN7.2	12	4,982,437 - 5,005,223 (+)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	12	6,091,160 - 6,094,822 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	12	8,177,033 - 8,196,167 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	12	6,777,818 - 6,782,067 (+)	NCBI		Celera
Cytogenetic Map	12	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in LOC102549494
467 total Variants

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312418	Kidm41	Kidney mass QTL 41	3.7	0.0001	kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	12	1	19611090	Rat
10755457	Coatc14	Coat color QTL 14		0.01759	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	12	1	22591684	Rat
724526	Uae3	Urinary albumin excretion QTL 3	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	12	3906969	10373166	Rat
634351	Apr5	Acute phase response QTL 5	6.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	12	1	44503507	Rat
8694179	Bw150	Body weight QTL 150	2.9	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
634350	Apr4	Acute phase response QTL 4	6		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	1172005	46172005	Rat
7411545	Bw128	Body weight QTL 128	5.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	36247923	Rat
737979	Pia22	Pristane induced arthritis QTL 22	53.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	1	44465750	Rat
9590147	Scort7	Serum corticosterone level QTL 7	13.61	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	12	1	42110980	Rat
7411586	Foco5	Food consumption QTL 5	5.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
1581516	Cm56	Cardiac mass QTL 56	4.2	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	1	29333307	Rat
9590086	Insglur6	Insulin/glucose ratio QTL 6	18.97	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	12	1	42110980	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	1	42450532	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	23297788	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	797729	8525593	Rat
2302042	Pia38	Pristane induced arthritis QTL 38	3.5	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	1	44503507	Rat
7411595	Foco9	Food consumption QTL 9	4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
1300174	Bw15	Body weight QTL 15	2.93		body mass (VT:0001259)	body weight loss (CMO:0001399)	12	1	9318387	Rat
7411660	Foco28	Food consumption QTL 28	10.9	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
1598855	Bp294	Blood pressure QTL 294	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	1	34851688	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_005491684	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_589942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_589943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_589944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_595224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_595225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_595226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_005491684

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	10,036,012 - 10,045,684 (+)	NCBI
mRatBN7.2	12	4,999,487 - 5,005,223 (+)	NCBI

RefSeq Acc Id:

XR_010056686

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	10,035,988 - 10,045,684 (+)	NCBI

RefSeq Acc Id:

XR_010056687

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	10,018,873 - 10,045,684 (+)	NCBI

RefSeq Acc Id:

XR_010056688

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	10,018,874 - 10,045,684 (+)	NCBI

RefSeq Acc Id:

XR_595225

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	10,036,026 - 10,045,684 (+)	NCBI
mRatBN7.2	12	4,999,505 - 5,005,223 (+)	NCBI
Rnor_6.0	12	6,091,160 - 6,094,822 (+)	NCBI

Sequence:

show sequence

CACACACACACACACACACTTTCATTTACTTTCAAGACTGGGCTGTGATAATGTGATGTAGTCA
TGTGATACAATGACGTTGGGACCTTGGGGAAGCACCCTGAAGTGTGCCCACTATAACCGGAGCA
CATTGTCATCAACTAGTGAATGAGTATTCAGGAAAATGAGTGCAAGGGTAATCGCTTGTGCACT
GTGTAAAAACATCATTTGTCAATAAAAAGCTGAATGGCCAATAGCAAAGCAGGAGAGAATAGGC
AGGACTTCCGGGAAGAGATAGGAACTCTGGGAAAGAGTCAGGCGTGGGAGATTGGCCACAGGGA
TGGGCAGAAGTCTGTCGCGTGAAACTGAGGAGGTAACCAGCTGTGTGGCAGAATTTAGACTAGT
ATAGACAGGGAACTGGGGCGGATGGAGAAAAGCCCAAACTTTTGCAAATGAGCGACACATCTCT
TCACCTGAACATTGTGACCGCTAAGCTGAAAGGTCTGAATGCTGAATAGGTTTGCTGAACACAG
TTGCCAAGTCAACAAGAAAACCACGCACGGCTTCTGAAAATCTGTCCAGTGCTCTGAGCAGAGG
GCCCCGCAGGCTTCTTTGTGTTCTCATCTGTGTTTTCTGGCCCTTTCTTGGGGGTTACAATTCA
TTTCTTCCTGAACATCAGACTCACAGTTGAGAATATTCGTTGGAAACTGCACTGAAGTGCTTCG
GACTCCGGCAGACCTCCAGCCCATGGGCAAACGATTTTCCTGACTCATCTGGTTCTGATGCCCT
CCGTATGAGTGTGGGTTTGGCAAAAGCTCCTGAAGCCTCCGTTGTGATTTTATTTCTAGGATTA
TTCCTCTAAAGAAGGATTGCAGGACCCTTGTTGATTAGAGTCCGGATTTCAGGGACATCAAAGT
TCACATAGTTGTTTTTGATCCATTGAGTCATCGTGAGCAGTGAGTTTGGAAAAGAAAACGGTTC
TGAAGAGGAAGATCTCAAAGTACCATCAAGATTACAGAGAAAAGGAGACAAACCTCTCTGGGGG
TTTGAGAAGAGAAAGCAGGGCTCCGGAGACCAAAGG

hide sequence

RefSeq Acc Id:

XR_595226

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	10,035,990 - 10,045,684 (+)	NCBI
mRatBN7.2	12	4,999,509 - 5,002,298 (+)	NCBI
Rnor_6.0	12	6,091,160 - 6,093,465 (+)	NCBI

Sequence:

show sequence

CACACACACACACACACACTTTCATTTACTTTCAAGACTGGGCTGTGATAATGTGATGTAGTCA
TGTGATACAATGACGTTGGGACCTTGGGGAAGCACCCTGAAGTGTGCCCACTATAACCGGAGCA
CATTGTCATCAACTAGTGAATGAGTATTCAGGAAAATGAGTGCAAGGGTAATCGCTTGTGCACT
GTGTAAAAACATCATTTGTCAATAAAAAGCTGAATGGCCAATAGCAAAGCAGGAGAGAATAGGC
AGGACTTCCGGGAAGAGATAGGAACTCTGGGAAAGAGTCAGGCGTGGGAGATTGGCCACAGGGA
TGGGCAGAAGTCTGTCGCGTGAAACTGAGGAGGTAACCAGCTGTGTGGCAGAATTTAGACTAGT
ATAGACAGGGAACTGGGGCGGATGGAGAAAAGCCCAAACTTTTGCAAATGAGCGACACATCTCT
TCACCTGAACATTGTGACCGCTAAGCTGAAAGGTCTGAATGCTGAATAGGTTTGCTGAACACAG
TTGCCAAGTCAACAAGAAAACCACGCACGGCTTCTGAAAATCTGTCCAGTGCTCTGAGCAGAGG
GCCCCGCAGGCTTCTTTGTGTTCTCATCTGTGTTTTCTGGCCCTTTCTTGGGGGTTACAATTCA
TTTCTTCCTGAACATCAGACTCACAGTTGAGAATATTCGTTGGAAACTGCACTGAAGTGCTTCG
GACTCCGGCAGACCTCCAGCCCATGGGCAAACGATTTTCCTGACTCATCTGGTTCTGATGCCCT
CCGTATGAGTGTGGGTTTGGCAAAAGCTCCTGAAGCCTCCGTTGTGATTTTATTTCTAGGATTA
TTCCTCTAAAGAAGGATTGCAGAACTCTGTGGAGTACACAGAACACCCTTGGGAAATATCTGCT
ACCAAGTGGATGAAGTGGTGTTTTCCACGTCACCCATCTCAAATATCCTTATTTCTGTTCGTCT
CTTACCATTTTTATTCTTATTTTTTTTTTAAGATTTATTTATTGTATGTG

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Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-20230	BioCyc
NCBI Gene	LOC102549494	ENTREZGENE
PhenoGen	LOC102549494	PhenoGen
RNAcentral	URS0000CCE640	RNACentral
	URS0000CCEB87	RNACentral
	URS0000CCF8B9	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-12-17	LOC102549494	uncharacterized LOC102549494			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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