LOC102548860 (60S ribosomal protein L19-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC102548860 (60S ribosomal protein L19-like) Rattus norvegicus
Analyze
Symbol: LOC102548860
Name: 60S ribosomal protein L19-like
RGD ID: 7496117
Description:
Type: pseudo
RefSeq Status: INFERRED
Previously known as: LOC685566; similar to ribosomal protein L19
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8214,317,727 - 14,326,105 (+)NCBIGRCr8
mRatBN7.2212,582,079 - 12,590,457 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx219,669,033 - 19,677,417 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0217,769,196 - 17,777,580 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0212,450,875 - 12,459,258 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0210,174,325 - 10,182,703 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0210,044,784 - 10,053,162 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4210,471,619 - 10,475,049 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera28,908,778 - 8,917,156 (+)NCBICelera
Cytogenetic Map2q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102548860
32 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
731166Mamtr2Mammary tumor resistance QTL 20.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777212654247Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
61368Mcs1Mammary carcinoma susceptibility QTL 14.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777223319447Rat
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat


Expression

RNA-SEQ Expression


Sequence



Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-55005 BioCyc
NCBI Gene LOC102548860 ENTREZGENE
PhenoGen LOC102548860 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 LOC102548860  60S ribosomal protein L19-like  LOC685566  similar to ribosomal protein L19  Data merged from RGD:1592582 737654 PROVISIONAL
2013-12-17 LOC102548860  60S ribosomal protein L19-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-01-09 LOC685566  similar to ribosomal protein L19  LOC682471  similar to ribosomal protein L19  Data merged from RGD:1583421 1643240 APPROVED
2006-11-20 LOC685566  similar to ribosomal protein L19      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC682471  similar to ribosomal protein L19      Symbol and Name status set to provisional 70820 PROVISIONAL