SLCO2A1 (solute carrier organic anion transporter family member 2A1) - Rat Genome Database

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Gene: SLCO2A1 (solute carrier organic anion transporter family member 2A1) Homo sapiens
Analyze
Symbol: SLCO2A1
Name: solute carrier organic anion transporter family member 2A1
RGD ID: 736966
HGNC Page HGNC:10955
Description: Predicted to enable prostaglandin transmembrane transporter activity and sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in prostaglandin transport and sodium-independent organic anion transport. Located in basal plasma membrane. Implicated in primary hypertrophic osteoarthropathy.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: MATR1; matrin F/G 1; OATP2A1; PGT; PHOAD; PHOAR2; prostaglandin transporter; SLC21A2; solute carrier family 21 (prostaglandin transporter), member 2; solute carrier family 21 member 2; solute carrier organic anion transporter family, member 2A1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383133,932,701 - 134,029,925 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3133,932,701 - 134,052,184 (-)EnsemblGRCh38hg38GRCh38
GRCh373133,651,545 - 133,748,769 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363135,134,230 - 135,231,418 (-)NCBINCBI36Build 36hg18NCBI36
Build 343135,134,239 - 135,231,426NCBI
Celera3132,077,395 - 132,174,290 (-)NCBICelera
Cytogenetic Map3q22.1-q22.2NCBI
HuRef3131,029,670 - 131,126,922 (-)NCBIHuRef
CHM1_13133,615,353 - 133,712,732 (-)NCBICHM1_1
T2T-CHM13v2.03136,677,860 - 136,775,063 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 46 rows
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Original Reference(s)
SLCO2A1Humangenetic disease  IAGPRGD:151762372|RGD:151824224|RGD:151840280|RGD:152135742|RGD:156111164|RGD:156208468|RGD:156230537|RGD:156296263|RGD:156442143|RGD:4017372098554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:28492532
SLCO2A1Humangenetic disease  IAGPRGD:155979296|RGD:155980170|RGD:155996673|RGD:155999207|RGD:156252945|RGD:156256007|RGD:156265600|RGD:329382678|RGD:401730109|RGD:405772039|RGD:405772046|RGD:405772052|RGD:405772058|RGD:405772065|RGD:407452144|RGD:407452146|RGD:407493546|RGD:407493551|RGD:407493555|RGD:407493559|RGD:597627521|RGD:597627524|RGD:597627527|RGD:597627530|RGD:597627534|RGD:597627537|RGD:5976275388554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
SLCO2A1Humanprimary hypertrophic osteoarthropathy  IAGPRGD:151896768554872ClinVar Annotator: match by term: PACHYDERMOPERIOSTOSIS, AUTOSOMAL RECESSIVEClinVarPMID:25741868|PMID:28492532
SLCO2A1Humanprimary hypertrophic osteoarthropathy  IAGPRGD:4056565698554872ClinVar Annotator: match by term: Pachydermoperiostosis syndromeClinVarPMID:20083684|PMID:22197487|PMID:22331663|PMID:23509104|PMID:25741868
SLCO2A1HumanPrimary Hypertrophic Osteoarthropathy, Autosomal Dominant  IAGPRGD:15136542|RGD:15166276|RGD:151710872|RGD:15181754|RGD:15183645|RGD:15203365|RGD:152040838|RGD:4017372098554872ClinVar Annotator: match by term: SLCO2A1-related conditionClinVarPMID:28492532
SLCO2A1HumanPrimary Hypertrophic Osteoarthropathy, Autosomal Dominant  IAGPRGD:129073038554872ClinVar Annotator: match by term: Hypertrophic osteoarthropathy, primary, autosomal dominantClinVarPMID:24153155|PMID:24929850|PMID:25741868|PMID:26539716|PMID:27134495|PMID:28425581|PMID:28492532|PMID:29313109|PMID:33852188
SLCO2A1HumanPrimary Hypertrophic Osteoarthropathy, Autosomal Dominant  IAGPRGD:1272878368554872ClinVar Annotator: match by term: Hypertrophic osteoarthropathy, primary, autosomal dominantClinVarPMID:23509104|PMID:28425581
SLCO2A1HumanPrimary Hypertrophic Osteoarthropathy, Autosomal Dominant  IAGPRGD:134356248554872ClinVar Annotator: match by term: Hypertrophic osteoarthropathy, primary, autosomal dominantClinVarPMID:22197487|PMID:22553128|PMID:23509104|PMID:26539716|PMID:28425581|PMID:28492532|PMID:33852188
SLCO2A1HumanPrimary Hypertrophic Osteoarthropathy, Autosomal Dominant  IAGPRGD:150334989|RGD:15103864|RGD:151896768554872ClinVar Annotator: match by term: Hypertrophic osteoarthropathy, primary, autosomal dominant | ClinVar Annotator: match by more ...ClinVarPMID:25741868|PMID:28492532
SLCO2A1HumanPrimary Hypertrophic Osteoarthropathy, Autosomal Dominant  IAGPRGD:1272878458554872ClinVar Annotator: match by term: Hypertrophic osteoarthropathy, primary, autosomal dominantClinVarPMID:28425581|PMID:28492532|PMID:33852188
SLCO2A1HumanPrimary Hypertrophic Osteoarthropathy, Autosomal Dominant  IAGPRGD:86031368554872ClinVar Annotator: match by term: Hypertrophic osteoarthropathy, primary, autosomal dominantClinVarPMID:16283874|PMID:22553128|PMID:22906430|PMID:23509104|PMID:24838973|PMID:28492532
SLCO2A1HumanPrimary Hypertrophic Osteoarthropathy, Autosomal Dominant  IAGPRGD:1504819418554872ClinVar Annotator: match by term: Hypertrophic osteoarthropathy, primary, autosomal dominantClinVarPMID:25741868
SLCO2A1HumanPrimary Hypertrophic Osteoarthropathy, Autosomal Dominant  IAGPRGD:1272878398554872ClinVar Annotator: match by term: Hypertrophic osteoarthropathy, primary, autosomal dominantClinVarPMID:27134495
SLCO2A1HumanPrimary Hypertrophic Osteoarthropathy, Autosomal Recessive, 1  IAGPRGD:151896768554872ClinVar Annotator: match by term: PDP, AUTOSOMAL RECESSIVEClinVarPMID:25741868|PMID:28492532
SLCO2A1HumanPrimary Hypertrophic Osteoarthropathy, Autosomal Recessive, 2  IAGPRGD:1272878438554872ClinVar Annotator: match by term: Hypertrophic osteoarthropathy, primary, autosomal recessive, 2ClinVarPMID:33852188
SLCO2A1HumanPrimary Hypertrophic Osteoarthropathy, Autosomal Recessive, 2  IAGPRGD:85681728554872ClinVar Annotator: match by term: Hypertrophic osteoarthropathy, primary, autosomal recessive, 2ClinVarPMID:22197487|PMID:22553128|PMID:23509104|PMID:28492532
SLCO2A1HumanPrimary Hypertrophic Osteoarthropathy, Autosomal Recessive, 2  IAGPRGD:1517926418554872ClinVar Annotator: match by term: Hypertrophic osteoarthropathy, primary, autosomal recessive, 2ClinVarPMID:25741868|PMID:28425581|PMID:28492532|PMID:28963081|PMID:37334733
SLCO2A1HumanPrimary Hypertrophic Osteoarthropathy, Autosomal Recessive, 2  IAGPRGD:150481941|RGD:151727972|RGD:151728384|RGD:38462144|RGD:401948260|RGD:401948272|RGD:5969383528554872ClinVar Annotator: match by term: Hypertrophic osteoarthropathy, primary, autosomal recessive, 2ClinVarPMID:25741868
SLCO2A1HumanPrimary Hypertrophic Osteoarthropathy, Autosomal Recessive, 2  IAGPRGD:86021538554872ClinVar Annotator: match by term: Hypertrophic osteoarthropathy, primary, autosomal recessive, 2ClinVarPMID:22197487|PMID:22696055|PMID:28425581|PMID:28492532|PMID:29264471|PMID:33852188
SLCO2A1HumanPrimary Hypertrophic Osteoarthropathy, Autosomal Recessive, 2  IAGPRGD:402487676|RGD:402487681|RGD:402487687|RGD:4024876998554872ClinVar Annotator: match by term: Hypertrophic osteoarthropathy, primary, autosomal recessive, 2ClinVarPMID:28425581
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Original Reference(s)
SLCO2A1Humanautism spectrum disorder  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:35663546
SLCO2A1Humanbasal cell carcinoma  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:36428691
SLCO2A1HumanColorectal Neoplasms  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:30510241
SLCO2A1HumanDrug-Related Side Effects and Adverse Reactions  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:15805072
SLCO2A1Humanprimary hypertrophic osteoarthropathy  EXP 11554173CTD Direct Evidence: marker/mechanismCTD 
Object Symbol
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Original Reference(s)
SLCO2A1HumanPrimary Hypertrophic Osteoarthropathy, Autosomal Dominant  IAGP 7240710 OMIM 
SLCO2A1HumanPrimary Hypertrophic Osteoarthropathy, Autosomal Recessive, 2  IAGP 7240710 OMIM 

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Original Reference(s)
SLCO2A1Human(+)-schisandrin B multiple interactionsISORGD:30516480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of SLCO2A1 mRNA]CTDPMID:31150632
SLCO2A1Human(S)-nicotine increases expressionEXP 6480464Nicotine results in increased expression of SLCO2A1 mRNACTDPMID:23825647
SLCO2A1Human1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane increases expressionEXP 6480464o,p'-DDT results in increased expression of SLCO2A1 mRNACTDPMID:19371625
SLCO2A1Human1,2-dimethylhydrazine decreases expressionISORGD:73696764804641,2-Dimethylhydrazine results in decreased expression of SLCO2A1 mRNACTDPMID:22206623
SLCO2A1Human17beta-estradiol multiple interactionsEXP 6480464[Estradiol binds to ESR2 protein] which results in increased expression of SLCO2A1 mRNA; [Estradiol co-treated more ...CTDPMID:20404318|PMID:20660070|PMID:30165855
SLCO2A1Human17beta-estradiol increases expressionISORGD:7369676480464Estradiol results in increased expression of SLCO2A1 mRNACTDPMID:39298647
SLCO2A1Human17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of SLCO2A1 mRNACTDPMID:23019147
SLCO2A1Human2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of SLCO2A1 mRNACTDPMID:20106945
SLCO2A1Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:30516480464Tetrachlorodibenzodioxin results in increased expression of SLCO2A1 mRNACTDPMID:34747641
SLCO2A1Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:30516480464Tetrachlorodibenzodioxin results in decreased expression of SLCO2A1 mRNACTDPMID:20959002|PMID:21215274
SLCO2A1Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:7369676480464Tetrachlorodibenzodioxin affects the expression of SLCO2A1 mRNACTDPMID:21570461
SLCO2A1Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:7369676480464Tetrachlorodibenzodioxin results in decreased expression of SLCO2A1 mRNACTDPMID:19770486
SLCO2A1Human2,4-dinitrotoluene affects expressionISORGD:305164804642,4-dinitrotoluene affects the expression of SLCO2A1 mRNACTDPMID:21346803
SLCO2A1Human2-methoxyethanol increases expressionISORGD:30516480464methyl cellosolve results in increased expression of SLCO2A1 mRNACTDPMID:21061450
SLCO2A1Human3,3',4,4',5-pentachlorobiphenyl decreases expressionISORGD:305164804643,4,5,3',4'-pentachlorobiphenyl results in decreased expression of SLCO2A1 mRNACTDPMID:20959002
SLCO2A1Human4,4'-sulfonyldiphenol increases expressionISORGD:7369676480464bisphenol S results in increased expression of SLCO2A1 mRNACTDPMID:30951980
SLCO2A1Human4,4'-sulfonyldiphenol increases expressionEXP 6480464bisphenol S results in increased expression of SLCO2A1 mRNACTDPMID:34831106
SLCO2A1Human4,4'-sulfonyldiphenol multiple interactionsISORGD:7369676480464[bisphenol S co-treated with Tretinoin] results in decreased expression of SLCO2A1 mRNACTDPMID:30951980
SLCO2A1Human4-hydroxyphenyl retinamide increases expressionISORGD:7369676480464Fenretinide results in increased expression of SLCO2A1 mRNACTDPMID:28973697
SLCO2A1Human5-aza-2'-deoxycytidine multiple interactionsEXP 6480464Rifampin inhibits the reaction [Decitabine results in increased expression of SLCO2A1 mRNA]CTDPMID:23137910

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Biological Process

  
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Original Reference(s)
SLCO2A1Humanlipid transport involved_inIEAUniProtKB-KW:KW-0445150520179 UniProtGO_REF:0000043
SLCO2A1Humanlipid transport involved_inTAS 150520179 PMID:8787677PINCPMID:8787677
SLCO2A1Humanmonoatomic ion transport involved_inIEAUniProtKB-KW:KW-0406150520179 UniProtGO_REF:0000043
SLCO2A1Humanprostaglandin transport acts_upstream_of_or_withinIEAUniProtKB:Q9EPT5|ensembl:ENSMUSP00000035148150520179 EnsemblGO_REF:0000107
SLCO2A1Humanprostaglandin transport involved_inIBAMGI:1346021|PANTHER:PTN002604696150520179 GO_CentralGO_REF:0000033
SLCO2A1Humansodium-independent organic anion transport involved_inTAS 150520179 ReactomeReactome:R-HSA-879518
SLCO2A1Humansodium-independent organic anion transport involved_inIBAPANTHER:PTN002261135|RGD:621389150520179 GO_CentralGO_REF:0000033
SLCO2A1Humantransmembrane transport involved_inIEAInterPro:IPR004156150520179 InterProGO_REF:0000002

Cellular Component
1 to 14 of 14 rows

  
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Original Reference(s)
SLCO2A1Humanbasal plasma membrane located_inIDA 150520179 PMID:35307651UniProtPMID:35307651
SLCO2A1Humanbasal plasma membrane located_inIEAUniProtKB-SubCell:SL-0024150520179 UniProtGO_REF:0000044
SLCO2A1Humanbasolateral plasma membrane is_active_inIBAFB:FBgn0032123|FB:FBgn0034715|FB:FBgn0034716|MGI:1351891|MGI:1889679|PANTHER:PTN002261135|RGD:1303048|RGD:628660|RGD:69300|UniProtKB:Q9NYB5150520179 GO_CentralGO_REF:0000033
SLCO2A1Humancytoplasm located_inIEAUniProtKB-SubCell:SL-0086150520179 UniProtGO_REF:0000044
SLCO2A1Humancytoplasm located_inIEAUniProtKB-KW:KW-0963150520179 UniProtGO_REF:0000043
SLCO2A1Humanlysosome located_inIEAUniProtKB-SubCell:SL-0158150520179 UniProtGO_REF:0000044
SLCO2A1Humanlysosome located_inIEAUniProtKB-KW:KW-0458150520179 UniProtGO_REF:0000043
SLCO2A1Humanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
SLCO2A1Humanmembrane located_inIEAUniProtKB-SubCell:SL-0162150520179 UniProtGO_REF:0000044
SLCO2A1Humanmembrane located_inTAS 150520179 PMID:8787677PINCPMID:8787677
SLCO2A1Humanmembrane located_inIEAInterPro:IPR004156150520179 InterProGO_REF:0000002
SLCO2A1Humanplasma membrane located_inIEAUniProtKB-KW:KW-1003150520179 UniProtGO_REF:0000043
SLCO2A1Humanplasma membrane located_inTAS 150520179 PMID:8787677PINCPMID:8787677|Reactome:R-HSA-5661188|Reactome:R-HSA-879528
SLCO2A1Humanplasma membrane located_inIEAUniProtKB-SubCell:SL-0039150520179 UniProtGO_REF:0000044
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Molecular Function

  
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Original Reference(s)
SLCO2A1Humanlipid transporter activity enablesTAS 150520179 PMID:8787677PINCPMID:8787677
SLCO2A1Humanprostaglandin transmembrane transporter activity enablesTAS 150520179 ReactomeReactome:R-HSA-5661188|Reactome:R-HSA-879528
SLCO2A1Humanprostaglandin transmembrane transporter activity enablesIBAMGI:1346021|PANTHER:PTN002604696150520179 GO_CentralGO_REF:0000033
SLCO2A1Humanprostaglandin transmembrane transporter activity enablesIEAUniProtKB:Q9EPT5|ensembl:ENSMUSP00000035148150520179 EnsemblGO_REF:0000107
SLCO2A1Humansodium-independent organic anion transmembrane transporter activity enablesIBAPANTHER:PTN002261135|RGD:621391|UniProtKB:O94956150520179 GO_CentralGO_REF:0000033
SLCO2A1Humantransmembrane transporter activity enablesIEAInterPro:IPR020846150520179 InterProGO_REF:0000002

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Original Reference(s)
SLCO2A1HumanAbnormal bone marrow cell morphology  IAGP 8699517 HPOORPHA:2796
SLCO2A1HumanAbnormal cortical bone morphology  IAGP 8699517 HPOORPHA:2796
SLCO2A1HumanAbnormal epiphysis morphology  IAGP 8699517 HPOORPHA:2796
SLCO2A1HumanAbnormal fingernail morphology  IAGP 8699517 HPOORPHA:2796
SLCO2A1HumanAbnormal hair pattern  IAGP 8699517 HPOORPHA:2796
SLCO2A1HumanAbnormal hair quantity  IAGP 8699517 HPOORPHA:2796
SLCO2A1HumanAcne  IAGP 8699517 HPOMIM:167100|PMID:23509104|MIM:614441|PMID:23509104|ORPHA:2796
SLCO2A1HumanAnemia  IAGP 8699517 HPOORPHA:2796
SLCO2A1HumanArthralgia  IAGP 8699517 HPOORPHA:2796
SLCO2A1HumanArthritis  IAGP 8699517 HPOORPHA:2796
SLCO2A1HumanAutosomal dominant inheritance  IAGP 8699517 HPOMIM:167100
SLCO2A1HumanAutosomal recessive inheritance  IAGP 8699517 HPOMIM:614441|PMID:23509104
SLCO2A1HumanAvascular necrosis  IAGP 8699517 HPOORPHA:2796
SLCO2A1HumanBone pain  IAGP 8699517 HPOORPHA:2796
SLCO2A1HumanCerebral palsy  IAGP 8699517 HPOORPHA:2796
SLCO2A1HumanClubbing  IAGP 8699517 HPOMIM:614441|PMID:23509104
SLCO2A1HumanClubbing of fingers  IAGP 8699517 HPOMIM:167100|PMID:24838973
SLCO2A1HumanClubbing of toes  IAGP 8699517 HPOORPHA:2796
SLCO2A1HumanCoarse facial features  IAGP 8699517 HPOORPHA:2796
SLCO2A1HumanCutis gyrata of scalp  IAGP 8699517 HPOMIM:167100|ORPHA:2796
1 to 20 of 54 rows

#
Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
PMID:8787677   PMID:9618293   PMID:9832484   PMID:12477932   PMID:14579113   PMID:15864125   PMID:16339169   PMID:16344560   PMID:17474147   PMID:18353443   PMID:18976975   PMID:19138942  
PMID:20346915   PMID:20357271   PMID:20424473   PMID:21873635   PMID:22060278   PMID:22197487   PMID:22331663   PMID:22553128   PMID:22696055   PMID:22906430   PMID:23509104   PMID:24153155  
PMID:24185079   PMID:24694755   PMID:24838973   PMID:24929850   PMID:25059581   PMID:25433165   PMID:25433169   PMID:25810087   PMID:26265282   PMID:26464663   PMID:26539716   PMID:26692285  
PMID:26850138   PMID:27134495   PMID:27336732   PMID:27467110   PMID:27681482   PMID:28602931   PMID:28783044   PMID:30400730   PMID:31004291   PMID:31196708   PMID:33166338   PMID:33397021  
PMID:33619025   PMID:35299026   PMID:35307651   PMID:35611666   PMID:35877192   PMID:36549465   PMID:36706979   PMID:36731680   PMID:36907595   PMID:37327083   PMID:37861627   PMID:37906648  
PMID:37915296   PMID:38644096   PMID:38755710  



SLCO2A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383133,932,701 - 134,029,925 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3133,932,701 - 134,052,184 (-)EnsemblGRCh38hg38GRCh38
GRCh373133,651,545 - 133,748,769 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363135,134,230 - 135,231,418 (-)NCBINCBI36Build 36hg18NCBI36
Build 343135,134,239 - 135,231,426NCBI
Celera3132,077,395 - 132,174,290 (-)NCBICelera
Cytogenetic Map3q22.1-q22.2NCBI
HuRef3131,029,670 - 131,126,922 (-)NCBIHuRef
CHM1_13133,615,353 - 133,712,732 (-)NCBICHM1_1
T2T-CHM13v2.03136,677,860 - 136,775,063 (-)NCBIT2T-CHM13v2.0
Slco2a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399102,885,686 - 102,973,201 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9102,865,911 - 102,973,201 (+)EnsemblGRCm39 Ensembl
GRCm389103,007,061 - 103,096,002 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9102,988,712 - 103,096,002 (+)EnsemblGRCm38mm10GRCm38
MGSCv379102,910,819 - 102,990,179 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369102,866,770 - 102,944,916 (+)NCBIMGSCv36mm8
Celera9102,558,775 - 102,638,236 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map954.72NCBI
Slco2a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88112,467,739 - 112,551,923 (+)NCBIGRCr8
mRatBN7.28103,588,916 - 103,672,546 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8103,588,916 - 103,672,546 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8109,252,126 - 109,332,029 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08107,451,296 - 107,531,195 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08105,293,972 - 105,373,875 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08111,495,443 - 111,577,320 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,495,331 - 111,577,833 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08110,886,314 - 110,968,548 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48108,012,829 - 108,098,561 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18108,032,283 - 108,118,016 (+)NCBI
Celera8102,966,792 - 103,051,202 (+)NCBICelera
Cytogenetic Map8q32NCBI
Slco2a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555014,543,194 - 4,625,715 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555014,544,065 - 4,623,615 (+)NCBIChiLan1.0ChiLan1.0
SLCO2A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22131,856,980 - 131,954,728 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13131,861,709 - 131,959,457 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03130,978,103 - 131,075,786 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13138,452,986 - 138,549,782 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3138,454,881 - 138,549,785 (-)Ensemblpanpan1.1panPan2
SLCO2A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12330,797,956 - 30,877,340 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2330,797,890 - 30,877,340 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2330,777,043 - 30,856,125 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02331,316,928 - 31,398,369 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2331,318,754 - 31,398,430 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12331,012,180 - 31,091,151 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02331,069,931 - 31,148,746 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02331,317,639 - 31,396,502 (-)NCBIUU_Cfam_GSD_1.0
Slco2a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560270,308,469 - 70,395,441 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365297,068,970 - 7,155,950 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365297,069,003 - 7,155,229 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLCO2A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1375,106,607 - 75,190,022 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11375,108,540 - 75,189,660 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21382,607,281 - 82,614,511 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21382,682,287 - 82,806,558 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLCO2A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11556,339,585 - 56,427,196 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1556,339,744 - 56,430,032 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604129,322,188 - 29,409,777 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slco2a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473010,256,799 - 10,339,827 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473010,256,799 - 10,339,388 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in SLCO2A1
303 total Variants

1 to 10 of 340 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_005630.3(SLCO2A1):c.830dup (p.Phe278fs) duplication Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV000030778] Chr3:133951238..133951239 [GRCh38]
Chr3:133670082..133670083 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.97-1G>A single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV000023104] Chr3:133979619 [GRCh38]
Chr3:133698463 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.1634del (p.Asn545fs) deletion Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV000023106]|not provided [RCV005089305] Chr3:133938485 [GRCh38]
Chr3:133657329 [GRCh37]
Chr3:3q22.1
pathogenic
SLCO2A1, GLY222ARG variation Primary hypertrophic osteoarthropathy, autosomal recessive 2 [RCV000023107] Chr3:3q21 pathogenic
SLCO2A1, IVS7, G-A, +1 single nucleotide variant Primary hypertrophic osteoarthropathy, autosomal recessive 2 [RCV000023108] Chr3:3q21 pathogenic
NM_005630.3(SLCO2A1):c.861+2T>C single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal dominant [RCV001527660]|Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003642961] Chr3:133951206 [GRCh38]
Chr3:133670050 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.764G>A (p.Gly255Glu) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV000023105]|not provided [RCV005089304] Chr3:133951305 [GRCh38]
Chr3:133670149 [GRCh37]
Chr3:3q22.1
pathogenic
NM_005630.3(SLCO2A1):c.754C>T (p.Arg252Ter) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV003642868] Chr3:133951315 [GRCh38]
Chr3:133670159 [GRCh37]
Chr3:3q22.1
pathogenic|uncertain significance
NM_005630.3(SLCO2A1):c.1259G>T (p.Cys420Phe) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV000030780]|not provided [RCV002223177] Chr3:133947292 [GRCh38]
Chr3:133666136 [GRCh37]
Chr3:3q22.1
pathogenic|likely pathogenic
NM_005630.3(SLCO2A1):c.253A>T (p.Ile85Phe) single nucleotide variant Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 [RCV000030781] Chr3:133973807 [GRCh38]
Chr3:133692651 [GRCh37]
Chr3:3q22.1
pathogenic
1 to 10 of 340 rows

Predicted Target Of
Summary Value
Count of predictions:3113
Count of miRNA genes:1097
Interacting mature miRNAs:1376
Transcripts:ENST00000310926, ENST00000462770, ENST00000464676, ENST00000477061, ENST00000478651, ENST00000478662, ENST00000481359, ENST00000493729
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 15 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597159858GWAS1255932_Hlipid measurement QTL GWAS1255932 (human)0.000003lipid measurementblood lipid measurement (CMO:0000050)3133972321133972322Human
597309340GWAS1405414_Hvaginal microbiome measurement QTL GWAS1405414 (human)0.000004vaginal microbiome measurement3133947365133947366Human
597162652GWAS1258726_Hlipid measurement QTL GWAS1258726 (human)0.000001lipid measurementblood lipid measurement (CMO:0000050)3133972321133972322Human
597036550GWAS1132624_Hcolorectal cancer, colorectal adenoma QTL GWAS1132624 (human)4e-09colorectal cancer, colorectal adenoma3133982275133982276Human
597605807GWAS1662667_HAbnormality of the immune system QTL GWAS1662667 (human)4e-13Abnormality of the immune system3133940121133940122Human
597151971GWAS1248045_Hcolorectal cancer QTL GWAS1248045 (human)1e-09colorectal cancer3134018138134018139Human
597163203GWAS1259277_Hcolorectal cancer QTL GWAS1259277 (human)3e-10colorectal cancer3134026952134026953Human
597294670GWAS1390744_Hrevision of total joint arthroplasty QTL GWAS1390744 (human)0.000001revision of total joint arthroplasty3133956309133956310Human
597324653GWAS1420727_Hcolorectal cancer QTL GWAS1420727 (human)5e-14colorectal cancer3133982275133982276Human
597309570GWAS1405644_Hvaginal microbiome measurement QTL GWAS1405644 (human)0.000007vaginal microbiome measurement3133951381133951382Human

1 to 10 of 15 rows
SHGC-77366  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373133,651,588 - 133,651,688UniSTSGRCh37
Build 363135,134,278 - 135,134,378RGDNCBI36
Celera3132,077,443 - 132,077,543RGD
Cytogenetic Map3q21UniSTS
HuRef3131,029,718 - 131,029,818UniSTS
TNG Radiation Hybrid Map377469.0UniSTS
GeneMap99-GB4 RH Map3473.72UniSTS
Whitehead-RH Map3615.8UniSTS
NCBI RH Map31189.4UniSTS
SLC21A2_824  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373133,651,537 - 133,652,376UniSTSGRCh37
Build 363135,134,227 - 135,135,066RGDNCBI36
Celera3132,077,392 - 132,078,231RGD
HuRef3131,029,667 - 131,030,506UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
1204 2215 2786 2196 4487 1420 1702 388 1164 226 1968 5759 5581 3543 511 1395 1231 162


1 to 17 of 17 rows
RefSeq Transcripts NG_031964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_005630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB201109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB201110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB201111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC080128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC117475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH006899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK303550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK309561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC041140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU783445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA592947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U70867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 17 of 17 rows

Ensembl Acc Id: ENST00000310926   ⟹   ENSP00000311291
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3133,932,701 - 134,029,925 (-)Ensembl
Ensembl Acc Id: ENST00000462770
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3133,942,312 - 134,029,925 (-)Ensembl
Ensembl Acc Id: ENST00000464676
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3133,950,952 - 134,029,925 (-)Ensembl
Ensembl Acc Id: ENST00000477061
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3133,948,654 - 133,949,216 (-)Ensembl
Ensembl Acc Id: ENST00000478651
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3133,955,343 - 134,029,925 (-)Ensembl
Ensembl Acc Id: ENST00000478662
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3133,979,547 - 134,052,184 (-)Ensembl
Ensembl Acc Id: ENST00000481359   ⟹   ENSP00000420028
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3133,934,639 - 134,029,923 (-)Ensembl
Ensembl Acc Id: ENST00000493729   ⟹   ENSP00000418893
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3133,934,611 - 134,029,914 (-)Ensembl
RefSeq Acc Id: NM_005630   ⟹   NP_005621
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383133,932,701 - 134,029,925 (-)NCBI
GRCh373133,651,540 - 133,748,920 (-)ENTREZGENE
Build 363135,134,230 - 135,231,418 (-)NCBI Archive
HuRef3131,029,670 - 131,126,922 (-)ENTREZGENE
CHM1_13133,615,353 - 133,712,732 (-)NCBI
T2T-CHM13v2.03136,677,860 - 136,775,063 (-)NCBI
Sequence:
1 to 12 of 12 rows
Protein RefSeqs NP_005621 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC09469 (Get FASTA)   NCBI Sequence Viewer  
  AAH41140 (Get FASTA)   NCBI Sequence Viewer  
  AAH51347 (Get FASTA)   NCBI Sequence Viewer  
  BAE03223 (Get FASTA)   NCBI Sequence Viewer  
  BAE03224 (Get FASTA)   NCBI Sequence Viewer  
  BAE03225 (Get FASTA)   NCBI Sequence Viewer  
  BAH13984 (Get FASTA)   NCBI Sequence Viewer  
  EAW79156 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000311291
  ENSP00000311291.4
GenBank Protein Q92959 (Get FASTA)   NCBI Sequence Viewer  
1 to 12 of 12 rows
RefSeq Acc Id: NP_005621   ⟸   NM_005630
- UniProtKB: Q86V98 (UniProtKB/Swiss-Prot),   Q8IUN2 (UniProtKB/Swiss-Prot),   Q92959 (UniProtKB/Swiss-Prot),   E7EU40 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000418893   ⟸   ENST00000493729
Ensembl Acc Id: ENSP00000420028   ⟸   ENST00000481359
Ensembl Acc Id: ENSP00000311291   ⟸   ENST00000310926
Kazal-like

Name Modeler Protein Id AA Range Protein Structure
AF-Q92959-F1-model_v2 AlphaFold Q92959 1-643 view protein structure

RGD ID:6865740
Promoter ID:EPDNEW_H6035
Type:initiation region
Name:SLCO2A1_1
Description:solute carrier organic anion transporter family member 2A1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H6036  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh383134,029,925 - 134,029,985EPDNEW
RGD ID:6865742
Promoter ID:EPDNEW_H6036
Type:initiation region
Name:SLCO2A1_2
Description:solute carrier organic anion transporter family member 2A1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H6035  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh383134,030,062 - 134,030,122EPDNEW


1 to 33 of 33 rows
Database
Acc Id
Source(s)
COSMIC SLCO2A1 COSMIC
Ensembl Genes ENSG00000174640 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000310926 ENTREZGENE
  ENST00000310926.11 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1250.20 UniProtKB/Swiss-Prot
  3.30.60.30 UniProtKB/Swiss-Prot
GTEx ENSG00000174640 GTEx
HGNC ID HGNC:10955 ENTREZGENE
Human Proteome Map SLCO2A1 Human Proteome Map
InterPro Kazal_dom UniProtKB/Swiss-Prot
  Kazal_dom_sf UniProtKB/Swiss-Prot
  MFS_dom UniProtKB/Swiss-Prot
  MFS_trans_sf UniProtKB/Swiss-Prot
  OATP UniProtKB/Swiss-Prot
KEGG Report hsa:6578 UniProtKB/Swiss-Prot
NCBI Gene 6578 ENTREZGENE
OMIM 601460 OMIM
PANTHER PTHR11388 UniProtKB/Swiss-Prot
  SOLUTE CARRIER ORGANIC ANION TRANSPORTER FAMILY MEMBER 2A1 UniProtKB/Swiss-Prot
Pfam Kazal_2 UniProtKB/Swiss-Prot
  OATP UniProtKB/Swiss-Prot
PharmGKB PA35840 PharmGKB
PROSITE KAZAL_2 UniProtKB/Swiss-Prot
  MFS UniProtKB/Swiss-Prot
Superfamily-SCOP SSF100895 UniProtKB/Swiss-Prot
  SSF103473 UniProtKB/Swiss-Prot
UniProt E7EU40 ENTREZGENE, UniProtKB/TrEMBL
  F8W9W8_HUMAN UniProtKB/TrEMBL
  Q86V98 ENTREZGENE
  Q8IUN2 ENTREZGENE
  Q92959 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q86V98 UniProtKB/Swiss-Prot
  Q8IUN2 UniProtKB/Swiss-Prot
1 to 33 of 33 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-29 SLCO2A1  solute carrier organic anion transporter family member 2A1  MATR1  matrin F/G 1  Data merged from RGD:1350110 737654 PROVISIONAL
2015-11-24 SLCO2A1  solute carrier organic anion transporter family member 2A1  SLCO2A1  solute carrier organic anion transporter family, member 2A1  Symbol and/or name change 5135510 APPROVED