Slco2a1 (solute carrier organic anion transporter family, member 2a1) - Rat Genome Database

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Gene: Slco2a1 (solute carrier organic anion transporter family, member 2a1) Rattus norvegicus
Analyze
Symbol: Slco2a1
Name: solute carrier organic anion transporter family, member 2a1
RGD ID: 3051
Description: Predicted to enable prostaglandin transmembrane transporter activity and sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in prostaglandin transport and sodium-independent organic anion transport. Predicted to be located in basal plasma membrane. Predicted to be active in basolateral plasma membrane. Human ortholog(s) of this gene implicated in primary hypertrophic osteoarthropathy. Orthologous to human SLCO2A1 (solute carrier organic anion transporter family member 2A1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Matr1; Matrin F/G; matrin F/G 1; OATP2A1; PGT; PHOAR2; prostaglandin transporter; Slc21a2; solute carrier family 21 (prostaglandin transporter) member 2; solute carrier family 21 (prostaglandin transporter), member 2; solute carrier family 21 member 2; solute carrier organic anion transporter family member 2A1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88112,467,739 - 112,551,923 (+)NCBIGRCr8
mRatBN7.28103,588,916 - 103,672,546 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8103,588,916 - 103,672,546 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8109,252,126 - 109,332,029 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08107,451,296 - 107,531,195 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08105,293,972 - 105,373,875 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08111,495,443 - 111,577,320 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,495,331 - 111,577,833 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08110,886,314 - 110,968,548 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48108,012,829 - 108,098,561 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18108,032,283 - 108,118,016 (+)NCBI
Celera8102,966,792 - 103,051,202 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(S)-nicotine  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2-methoxyethanol  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP)
Benoxacor  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bleomycin A2  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
chlordecone  (ISO)
chloroprene  (ISO)
chromium(6+)  (ISO)
ciprofibrate  (ISO)
clofibrate  (ISO)
copper(II) chloride  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diazinon  (ISO)
dibutyl phthalate  (ISO)
dichloroacetic acid  (ISO)
diclofenac  (ISO)
diethyl maleate  (EXP)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
endosulfan  (EXP)
esketamine  (ISO)
ethylparaben  (ISO)
ferric oxide  (EXP)
flutamide  (EXP)
furan  (EXP)
genistein  (ISO)
indometacin  (ISO)
ketoprofen  (ISO)
lead diacetate  (EXP,ISO)
lumiracoxib  (ISO)
methotrexate  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (EXP)
mifepristone  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-ethyl-N-nitrosourea  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
naproxen  (ISO)
nefazodone  (EXP)
nicotine  (ISO)
nimesulide  (EXP)
ozone  (EXP)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
prostaglandin E2  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rifampicin  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
spironolactone  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
thiram  (ISO)
trichloroethene  (ISO)
triclosan  (ISO)
Triptolide  (EXP)
triptonide  (ISO)
tunicamycin  (ISO)
valdecoxib  (EXP)
valproic acid  (EXP)
vinclozolin  (EXP)
zidovudine  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Expression of PGT in MDCK cell monolayers: polarized apical localization and induction of active PG transport. Endo S, etal., Am J Physiol Renal Physiol 2002 Apr;282(4):F618-22.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Molecular cloning of matrin F/G: A DNA binding protein of the nuclear matrix that contains putative zinc finger motifs. Hakes DJ and Berezney R, Proc Natl Acad Sci U S A 1991 Jul 15;88(14):6186-90.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7754369   PMID:10484490   PMID:12189169   PMID:30420359  


Genomics

Comparative Map Data
Slco2a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88112,467,739 - 112,551,923 (+)NCBIGRCr8
mRatBN7.28103,588,916 - 103,672,546 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8103,588,916 - 103,672,546 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8109,252,126 - 109,332,029 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08107,451,296 - 107,531,195 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08105,293,972 - 105,373,875 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08111,495,443 - 111,577,320 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,495,331 - 111,577,833 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08110,886,314 - 110,968,548 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48108,012,829 - 108,098,561 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18108,032,283 - 108,118,016 (+)NCBI
Celera8102,966,792 - 103,051,202 (+)NCBICelera
Cytogenetic Map8q32NCBI
SLCO2A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383133,932,701 - 134,029,925 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3133,932,701 - 134,052,184 (-)EnsemblGRCh38hg38GRCh38
GRCh373133,651,545 - 133,748,769 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363135,134,230 - 135,231,418 (-)NCBINCBI36Build 36hg18NCBI36
Build 343135,134,239 - 135,231,426NCBI
Celera3132,077,395 - 132,174,290 (-)NCBICelera
Cytogenetic Map3q22.1-q22.2NCBI
HuRef3131,029,670 - 131,126,922 (-)NCBIHuRef
CHM1_13133,615,353 - 133,712,732 (-)NCBICHM1_1
T2T-CHM13v2.03136,677,860 - 136,775,063 (-)NCBIT2T-CHM13v2.0
Slco2a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399102,885,686 - 102,973,201 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9102,865,911 - 102,973,201 (+)EnsemblGRCm39 Ensembl
GRCm389103,007,061 - 103,096,002 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9102,988,712 - 103,096,002 (+)EnsemblGRCm38mm10GRCm38
MGSCv379102,910,819 - 102,990,179 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369102,866,770 - 102,944,916 (+)NCBIMGSCv36mm8
Celera9102,558,775 - 102,638,236 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map954.72NCBI
Slco2a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555014,543,194 - 4,625,715 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555014,544,065 - 4,623,615 (+)NCBIChiLan1.0ChiLan1.0
SLCO2A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22131,856,980 - 131,954,728 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13131,861,709 - 131,959,457 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03130,978,103 - 131,075,786 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13138,452,986 - 138,549,782 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3138,454,881 - 138,549,785 (-)Ensemblpanpan1.1panPan2
SLCO2A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12330,797,956 - 30,877,340 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2330,797,890 - 30,877,340 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2330,777,043 - 30,856,125 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02331,316,928 - 31,398,369 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2331,318,754 - 31,398,430 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12331,012,180 - 31,091,151 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02331,069,931 - 31,148,746 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02331,317,639 - 31,396,502 (-)NCBIUU_Cfam_GSD_1.0
Slco2a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560270,308,469 - 70,395,441 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365297,068,970 - 7,155,950 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365297,069,003 - 7,155,229 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLCO2A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1375,106,607 - 75,190,022 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11375,108,540 - 75,189,660 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21382,607,281 - 82,614,511 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21382,682,287 - 82,806,558 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLCO2A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11556,339,585 - 56,427,196 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1556,339,744 - 56,430,032 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604129,322,188 - 29,409,777 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slco2a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473010,256,799 - 10,339,827 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473010,256,799 - 10,339,388 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slco2a1
280 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:78
Count of miRNA genes:68
Interacting mature miRNAs:75
Transcripts:ENSRNOT00000012162
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)889265192114019816Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
631217Activ1Activity QTL 115.9voluntary movement trait (VT:0003491)number of photobeam interruptions in an experimental apparatus (CMO:0001517)8102370617108923645Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat

Markers in Region
D8Arb18  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28103,671,211 - 103,671,496 (+)MAPPERmRatBN7.2
Rnor_6.08111,575,988 - 111,576,270NCBIRnor6.0
Rnor_5.08110,966,733 - 110,967,015UniSTSRnor5.0
RGSC_v3.48108,097,851 - 108,098,134RGDRGSC3.4
RGSC_v3.48108,097,852 - 108,098,134UniSTSRGSC3.4
RGSC_v3.18108,117,306 - 108,117,589RGD
Celera8103,049,874 - 103,050,152UniSTS
RH 3.4 Map81161.5UniSTS
RH 3.4 Map81161.5RGD
RH 2.0 Map8865.7RGD
SHRSP x BN Map866.31RGD
Cytogenetic Map8q32UniSTS
D8Wox25  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28103,671,212 - 103,671,431 (+)MAPPERmRatBN7.2
Rnor_6.08111,575,989 - 111,576,205NCBIRnor6.0
Rnor_5.08110,966,734 - 110,966,950UniSTSRnor5.0
RGSC_v3.48108,097,853 - 108,098,069UniSTSRGSC3.4
Celera8103,049,875 - 103,050,087UniSTS
Cytogenetic Map8q32UniSTS
RH141245  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28103,672,776 - 103,672,963 (+)MAPPERmRatBN7.2
Rnor_6.08111,577,551 - 111,577,737NCBIRnor6.0
Rnor_5.08110,968,296 - 110,968,482UniSTSRnor5.0
RGSC_v3.48108,099,415 - 108,099,601UniSTSRGSC3.4
Celera8103,051,433 - 103,051,619UniSTS
Cytogenetic Map8q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000012162   ⟹   ENSRNOP00000012162
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8103,588,916 - 103,672,546 (+)Ensembl
Rnor_6.0 Ensembl8111,495,443 - 111,576,697 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091275   ⟹   ENSRNOP00000069382
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8103,588,916 - 103,672,546 (+)Ensembl
Rnor_6.0 Ensembl8111,495,331 - 111,577,833 (+)Ensembl
RefSeq Acc Id: NM_022667   ⟹   NP_073158
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88112,467,739 - 112,551,440 (+)NCBI
mRatBN7.28103,588,916 - 103,672,546 (+)NCBI
Rnor_6.08111,495,443 - 111,577,320 (+)NCBI
Rnor_5.08110,886,314 - 110,968,548 (+)NCBI
RGSC_v3.48108,012,829 - 108,098,561 (+)RGD
Celera8102,966,792 - 103,051,202 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243655   ⟹   XP_006243717
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88112,467,797 - 112,551,923 (+)NCBI
mRatBN7.28103,589,046 - 103,671,343 (+)NCBI
Rnor_6.08111,495,546 - 111,576,119 (+)NCBI
Rnor_5.08110,886,314 - 110,968,548 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039080798   ⟹   XP_038936726
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88112,520,313 - 112,551,923 (+)NCBI
mRatBN7.28103,641,421 - 103,671,343 (+)NCBI
Protein Sequences
Protein RefSeqs NP_073158 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243717 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936726 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA41574 (Get FASTA)   NCBI Sequence Viewer  
  EDL77394 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000012162.6
  ENSRNOP00000069382.1
GenBank Protein Q00910 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_073158   ⟸   NM_022667
- UniProtKB: Q00910 (UniProtKB/Swiss-Prot),   A0A0G2JV79 (UniProtKB/TrEMBL),   A6I2I3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243717   ⟸   XM_006243655
- Peptide Label: isoform X1
- UniProtKB: Q00910 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012162   ⟸   ENSRNOT00000012162
Ensembl Acc Id: ENSRNOP00000069382   ⟸   ENSRNOT00000091275
RefSeq Acc Id: XP_038936726   ⟸   XM_039080798
- Peptide Label: isoform X2
Protein Domains
Kazal-like   Major facilitator superfamily (MFS) profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q00910-F1-model_v2 AlphaFold Q00910 1-644 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696227
Promoter ID:EPDNEW_R6751
Type:single initiation site
Name:Slco2a1_1
Description:solute carrier organic anion transporter family, member 2a1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08111,495,404 - 111,495,464EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3051 AgrOrtholog
BioCyc Gene G2FUF-29338 BioCyc
Ensembl Genes ENSRNOG00000009005 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012162.7 UniProtKB/TrEMBL
  ENSRNOT00000091275.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.60.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Kazal_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kazal_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MFS_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:24546 UniProtKB/TrEMBL
NCBI Gene 24546 ENTREZGENE
PANTHER PTHR11388 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SOLUTE CARRIER ORGANIC ANION TRANSPORTER FAMILY MEMBER 2A1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Kazal_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slco2a1 PhenoGen
PROSITE KAZAL_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MFS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009005 RatGTEx
Superfamily-SCOP SSF100895 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF103473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JV79 ENTREZGENE, UniProtKB/TrEMBL
  A6I2I3 ENTREZGENE, UniProtKB/TrEMBL
  G3V753_RAT UniProtKB/TrEMBL
  Q00910 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Slco2a1  solute carrier organic anion transporter family, member 2a1  Matr1  matrin F/G 1  Symbol and Name updated 1299863 APPROVED
2002-11-06 Matr1  matrin F/G 1    Matrin F/G  Name updated 625702 APPROVED
2002-06-10 Matr1  Matrin F/G      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_protein 544 amino acids; 59.7 kDa 633269