CD5 (CD5 molecule) - Rat Genome Database

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Gene: CD5 (CD5 molecule) Homo sapiens
Analyze
Symbol: CD5
Name: CD5 molecule
RGD ID: 736702
HGNC Page HGNC:1685
Description: Predicted to be involved in T cell costimulation. Predicted to act upstream of or within apoptotic signaling pathway. Located in plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: cd5 antigen; CD5 antigen (p56-62); LEU1; lymphocyte antigen T1/Leu-1; T-cell surface glycoprotein CD5; T1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381161,093,963 - 61,127,852 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1161,102,489 - 61,127,852 (+)EnsemblGRCh38hg38GRCh38
GRCh371160,861,435 - 60,895,324 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361160,626,543 - 60,651,900 (+)NCBINCBI36Build 36hg18NCBI36
Build 341160,626,542 - 60,651,897NCBI
Celera1158,230,398 - 58,255,502 (+)NCBICelera
Cytogenetic Map11q12.2NCBI
HuRef1157,229,625 - 57,239,225 (+)NCBIHuRef
CHM1_11160,734,232 - 60,759,595 (+)NCBICHM1_1
T2T-CHM13v2.01161,045,145 - 61,079,346 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1385158   PMID:1711157   PMID:3093892   PMID:7512031   PMID:7513045   PMID:7539755   PMID:8806810   PMID:9079809   PMID:9378960   PMID:9603468   PMID:9692886   PMID:9834084  
PMID:9862202   PMID:10082557   PMID:10510361   PMID:11123317   PMID:11298344   PMID:11390434   PMID:11751967   PMID:11861604   PMID:11869933   PMID:12393419   PMID:12447961   PMID:12473675  
PMID:12477932   PMID:12522270   PMID:12707340   PMID:14603444   PMID:15144186   PMID:15187131   PMID:15489334   PMID:15549146   PMID:15843554   PMID:15981803   PMID:15998834   PMID:16107871  
PMID:16344560   PMID:16923582   PMID:17325858   PMID:17513730   PMID:17585360   PMID:17878328   PMID:18006695   PMID:18339402   PMID:18555888   PMID:18556402   PMID:18572329   PMID:18641338  
PMID:19141631   PMID:19573080   PMID:19758163   PMID:19773279   PMID:19901887   PMID:20568250   PMID:21048031   PMID:21123968   PMID:21395509   PMID:21398617   PMID:21436320   PMID:21539877  
PMID:21757751   PMID:21786452   PMID:21833088   PMID:21835435   PMID:21873635   PMID:21892966   PMID:21926348   PMID:22278227   PMID:22333190   PMID:22395507   PMID:22406370   PMID:22732449  
PMID:22904299   PMID:23128233   PMID:23376399   PMID:23686814   PMID:23958552   PMID:24051121   PMID:24124149   PMID:24166616   PMID:24390342   PMID:24928995   PMID:25402503   PMID:26363459  
PMID:26369546   PMID:26439863   PMID:26800311   PMID:26968550   PMID:26991857   PMID:27005442   PMID:27169428   PMID:27499044   PMID:27616053   PMID:27693386   PMID:28039906   PMID:28159554  
PMID:28280048   PMID:28406773   PMID:28752543   PMID:29125235   PMID:30019388   PMID:30676652   PMID:31045891   PMID:31097020   PMID:31359442   PMID:31688139   PMID:31706988   PMID:32896973  
PMID:33314017   PMID:33961781   PMID:34070159   PMID:35332132   PMID:35767366   PMID:35844135   PMID:36002232   PMID:36490346   PMID:37230972   PMID:37953373  


Genomics

Comparative Map Data
CD5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381161,093,963 - 61,127,852 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1161,102,489 - 61,127,852 (+)EnsemblGRCh38hg38GRCh38
GRCh371160,861,435 - 60,895,324 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361160,626,543 - 60,651,900 (+)NCBINCBI36Build 36hg18NCBI36
Build 341160,626,542 - 60,651,897NCBI
Celera1158,230,398 - 58,255,502 (+)NCBICelera
Cytogenetic Map11q12.2NCBI
HuRef1157,229,625 - 57,239,225 (+)NCBIHuRef
CHM1_11160,734,232 - 60,759,595 (+)NCBICHM1_1
T2T-CHM13v2.01161,045,145 - 61,079,346 (+)NCBIT2T-CHM13v2.0
Cd5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391910,695,471 - 10,716,390 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1910,694,480 - 10,716,366 (-)EnsemblGRCm39 Ensembl
GRCm381910,718,107 - 10,739,026 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1910,717,116 - 10,739,002 (-)EnsemblGRCm38mm10GRCm38
MGSCv371910,792,633 - 10,813,464 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361910,785,188 - 10,806,019 (-)NCBIMGSCv36mm8
Celera1911,417,945 - 11,438,925 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map197.16NCBI
Cd5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81216,790,245 - 216,811,209 (-)NCBIGRCr8
mRatBN7.21207,365,337 - 207,386,313 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1207,365,337 - 207,386,313 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1215,743,950 - 215,764,911 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01222,799,530 - 222,820,538 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01215,494,529 - 215,515,538 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01226,770,912 - 226,791,861 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1226,770,744 - 226,791,879 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01233,835,586 - 233,856,535 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41213,213,327 - 213,234,277 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11213,371,756 - 213,392,707 (-)NCBI
Celera1204,858,319 - 204,879,274 (-)NCBICelera
RH 3.4 Map11510.5RGD
Cytogenetic Map1q43NCBI
Cd5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555115,664,682 - 5,669,368 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555115,656,333 - 5,670,510 (+)NCBIChiLan1.0ChiLan1.0
CD5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2962,268,427 - 62,294,553 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11163,312,514 - 63,338,350 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01156,362,415 - 56,388,469 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11159,795,290 - 59,826,448 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1159,801,808 - 59,826,448 (+)Ensemblpanpan1.1panPan2
CD5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11855,216,415 - 55,235,567 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1855,217,276 - 55,235,405 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1853,788,355 - 53,808,734 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01856,263,766 - 56,284,145 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1856,265,057 - 56,284,043 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11855,321,635 - 55,341,987 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01854,942,998 - 54,963,371 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01855,824,104 - 55,844,496 (-)NCBIUU_Cfam_GSD_1.0
Cd5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494711,739,583 - 11,753,021 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365811,854,460 - 1,873,142 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365811,854,166 - 1,866,843 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl210,648,974 - 10,673,919 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1210,648,973 - 10,673,479 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2210,251,315 - 10,262,364 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1112,720,004 - 12,747,637 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl112,719,333 - 12,746,960 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038110,084,145 - 110,097,718 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624926374,819 - 380,943 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624926373,694 - 381,596 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CD5
37 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_014207.3(CD5):c.620G>A (p.Gly207Asp) single nucleotide variant Malignant melanoma [RCV000069550] Chr11:61119390 [GRCh38]
Chr11:60886862 [GRCh37]
Chr11:60643438 [NCBI36]
Chr11:11q12.2		 not provided
Single allele deletion Intellectual disability [RCV001293382] Chr11:118359328..118372573 [GRCh37]
Chr11:11p15.3-q23.3		 pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470) copy number gain See cases [RCV000511729] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470)x3 copy number gain See cases [RCV000510881] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
NM_014207.4(CD5):c.247C>T (p.Arg83Trp) single nucleotide variant not specified [RCV004294597] Chr11:61118327 [GRCh38]
Chr11:60885799 [GRCh37]
Chr11:11q12.2		 uncertain significance
GRCh37/hg19 11q12.1-12.3(chr11:58935215-62177656)x3 copy number gain not provided [RCV000683362] Chr11:58935215..62177656 [GRCh37]
Chr11:11q12.1-12.3		 likely pathogenic
GRCh37/hg19 11p15.5-q25(chr11:198510-134934063)x3 copy number gain not provided [RCV000737348] Chr11:198510..134934063 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
GRCh37/hg19 11p15.5-q25(chr11:70864-134938470)x3 copy number gain not provided [RCV000749874] Chr11:70864..134938470 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
GRCh37/hg19 11q12.2(chr11:60757633-60878915)x3 copy number gain not provided [RCV000737541] Chr11:60757633..60878915 [GRCh37]
Chr11:11q12.2		 benign
GRCh37/hg19 11q12.2(chr11:60760971-60872073)x3 copy number gain not provided [RCV000737542] Chr11:60760971..60872073 [GRCh37]
Chr11:11q12.2		 benign
GRCh37/hg19 11q12.2(chr11:60499486-61529578)x3 copy number gain not provided [RCV000848682] Chr11:60499486..61529578 [GRCh37]
Chr11:11q12.2		 uncertain significance
GRCh37/hg19 11q12.2-12.3(chr11:60385382-62456278)x3 copy number gain not provided [RCV001006412] Chr11:60385382..62456278 [GRCh37]
Chr11:11q12.2-12.3		 uncertain significance
NM_014207.4(CD5):c.793C>G (p.Leu265Val) single nucleotide variant not specified [RCV004285830] Chr11:61119563 [GRCh38]
Chr11:60887035 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.202T>G (p.Ser68Ala) single nucleotide variant not specified [RCV004161875] Chr11:61118282 [GRCh38]
Chr11:60885754 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.671C>T (p.Pro224Leu) single nucleotide variant not provided [RCV001615596] Chr11:61119441 [GRCh38]
Chr11:60886913 [GRCh37]
Chr11:11q12.2		 benign
NC_000011.9:g.(?_59596957)_(68707199_?)dup duplication Familial temporal lobe epilepsy 8 [RCV001372442] Chr11:59596957..68707199 [GRCh37]
Chr11:11q12.1-13.3		 uncertain significance
NM_014207.4(CD5):c.1412C>T (p.Ala471Val) single nucleotide variant not provided [RCV001685703] Chr11:61125763 [GRCh38]
Chr11:60893235 [GRCh37]
Chr11:11q12.2		 benign
NC_000011.9:g.(?_58916346)_(64972349_?)dup duplication Leukocyte adhesion deficiency 3 [RCV003113394]|not provided [RCV003113393] Chr11:58916346..64972349 [GRCh37]
Chr11:11q12.1-13.1		 uncertain significance|no classifications from unflagged records
NM_014207.4(CD5):c.983G>A (p.Arg328Gln) single nucleotide variant not specified [RCV004313612] Chr11:61121788 [GRCh38]
Chr11:60889260 [GRCh37]
Chr11:11q12.2		 likely benign
GRCh37/hg19 11p11.2-q12.2(chr11:51581311-54891247)x3 copy number gain See cases [RCV002286338] Chr11:51581311..54891247 [GRCh37]
Chr11:11p11.2-q12.2		 pathogenic
GRCh37/hg19 11p13-q25(chr11:32799481-134938470)x3 copy number gain MISSED ABORTION [RCV002282973] Chr11:32799481..134938470 [GRCh37]
Chr11:11p13-q25		 pathogenic
NM_014207.4(CD5):c.437C>T (p.Pro146Leu) single nucleotide variant not specified [RCV004197093] Chr11:61118951 [GRCh38]
Chr11:60886423 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.1366C>T (p.Pro456Ser) single nucleotide variant not specified [RCV004114762] Chr11:61125118 [GRCh38]
Chr11:60892590 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.115C>T (p.Arg39Cys) single nucleotide variant not specified [RCV004081317] Chr11:61118195 [GRCh38]
Chr11:60885667 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.868G>A (p.Glu290Lys) single nucleotide variant not specified [RCV004096997] Chr11:61121673 [GRCh38]
Chr11:60889145 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.173T>A (p.Met58Lys) single nucleotide variant not specified [RCV004242054] Chr11:61118253 [GRCh38]
Chr11:60885725 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.1013G>A (p.Arg338Gln) single nucleotide variant not specified [RCV004195440] Chr11:61121818 [GRCh38]
Chr11:60889290 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.1405G>A (p.Glu469Lys) single nucleotide variant not specified [RCV004199186] Chr11:61125756 [GRCh38]
Chr11:60893228 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.723C>G (p.Asn241Lys) single nucleotide variant not specified [RCV004243839] Chr11:61119493 [GRCh38]
Chr11:60886965 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.163G>A (p.Gly55Arg) single nucleotide variant not specified [RCV004238883] Chr11:61118243 [GRCh38]
Chr11:60885715 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.517G>A (p.Val173Met) single nucleotide variant not specified [RCV004070865] Chr11:61119287 [GRCh38]
Chr11:60886759 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.1393T>C (p.Tyr465His) single nucleotide variant not specified [RCV004189104] Chr11:61125145 [GRCh38]
Chr11:60892617 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.1334C>T (p.Thr445Ile) single nucleotide variant not specified [RCV004208901] Chr11:61125086 [GRCh38]
Chr11:60892558 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.1244G>A (p.Arg415His) single nucleotide variant not specified [RCV004211252] Chr11:61123902 [GRCh38]
Chr11:60891374 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.1292G>A (p.Arg431His) single nucleotide variant not specified [RCV004254196] Chr11:61125044 [GRCh38]
Chr11:60892516 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.842G>A (p.Gly281Asp) single nucleotide variant not specified [RCV004345680] Chr11:61121647 [GRCh38]
Chr11:60889119 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.301C>T (p.Pro101Ser) single nucleotide variant not specified [RCV004343619] Chr11:61118381 [GRCh38]
Chr11:60885853 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.1301C>T (p.Thr434Met) single nucleotide variant not specified [RCV004362004] Chr11:61125053 [GRCh38]
Chr11:60892525 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.519G>T (p.Val173=) single nucleotide variant not provided [RCV003395818] Chr11:61119289 [GRCh38]
Chr11:60886761 [GRCh37]
Chr11:11q12.2		 likely benign
GRCh37/hg19 11q12.2-13.5(chr11:59923608-76272324)x3 copy number gain not provided [RCV003484842] Chr11:59923608..76272324 [GRCh37]
Chr11:11q12.2-13.5		 pathogenic
NM_014207.4(CD5):c.1108C>G (p.Pro370Ala) single nucleotide variant not provided [RCV003490545] Chr11:61122915 [GRCh38]
Chr11:60890387 [GRCh37]
Chr11:11q12.2		 uncertain significance
GRCh37/hg19 11p11.12-q13.1(chr11:50398499-63924462)x3 copy number gain not specified [RCV003986918] Chr11:50398499..63924462 [GRCh37]
Chr11:11p11.12-q13.1		 likely pathogenic
GRCh37/hg19 11q12.1-13.3(chr11:56895955-69295402)x3 copy number gain not specified [RCV003986944] Chr11:56895955..69295402 [GRCh37]
Chr11:11q12.1-13.3		 likely pathogenic
NM_014207.4(CD5):c.301C>G (p.Pro101Ala) single nucleotide variant not specified [RCV004435484] Chr11:61118381 [GRCh38]
Chr11:60885853 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.446C>A (p.Thr149Lys) single nucleotide variant not specified [RCV004435485] Chr11:61118960 [GRCh38]
Chr11:60886432 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.704T>C (p.Ile235Thr) single nucleotide variant not specified [RCV004435486] Chr11:61119474 [GRCh38]
Chr11:60886946 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.1345G>A (p.Val449Met) single nucleotide variant not specified [RCV004435482] Chr11:61125097 [GRCh38]
Chr11:60892569 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.1168C>G (p.Leu390Val) single nucleotide variant not specified [RCV004435480] Chr11:61122975 [GRCh38]
Chr11:60890447 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.848G>C (p.Ser283Thr) single nucleotide variant not specified [RCV004435487] Chr11:61121653 [GRCh38]
Chr11:60889125 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.125C>T (p.Ser42Leu) single nucleotide variant not specified [RCV004435481] Chr11:61118205 [GRCh38]
Chr11:60885677 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.1475C>T (p.Ala492Val) single nucleotide variant not specified [RCV004435483] Chr11:61125826 [GRCh38]
Chr11:60893298 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.553A>G (p.Ile185Val) single nucleotide variant not specified [RCV004606572] Chr11:61119323 [GRCh38]
Chr11:60886795 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.1418A>G (p.His473Arg) single nucleotide variant not specified [RCV004606573] Chr11:61125769 [GRCh38]
Chr11:60893241 [GRCh37]
Chr11:11q12.2		 uncertain significance
NM_014207.4(CD5):c.1186G>A (p.Val396Met) single nucleotide variant not specified [RCV004606571] Chr11:61122993 [GRCh38]
Chr11:60890465 [GRCh37]
Chr11:11q12.2		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1034
Count of miRNA genes:672
Interacting mature miRNAs:748
Transcripts:ENST00000347785, ENST00000544014
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357380BW64_HBody weight QTL 64 (human)2.2Body weightpercent fat after exercise training116097893786978937Human
407211253GWAS860229_Hcoffee consumption measurement QTL GWAS860229 (human)0.0000001coffee consumption measurement116109566961095670Human
407254195GWAS903171_Hfatty acid measurement QTL GWAS903171 (human)9e-10fatty acid measurement116111904761119048Human
407244447GWAS893423_Hgut microbiome measurement QTL GWAS893423 (human)3e-08gut microbiome measurement116111177561111776Human
407062366GWAS711342_Hlevel of Phosphatidylcholine (16:0_20:4) in blood serum QTL GWAS711342 (human)4e-09level of Phosphatidylcholine (16:0_20:4) in blood serum116112216861122169Human

Markers in Region
GDB:197830  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371160,885,858 - 60,886,780UniSTSGRCh37
Build 361160,642,434 - 60,643,356RGDNCBI36
Celera1158,246,060 - 58,246,982RGD
Cytogenetic Map11q13UniSTS
HuRef1157,229,848 - 57,230,770UniSTS
CD5  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371160,893,761 - 60,894,240UniSTSGRCh37
Build 361160,650,337 - 60,650,816RGDNCBI36
Celera1158,253,939 - 58,254,418RGD
Cytogenetic Map11q13UniSTS
HuRef1157,237,662 - 57,238,141UniSTS
GeneMap99-GB4 RH Map11227.59UniSTS
SHGC-58041  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371160,895,047 - 60,895,275UniSTSGRCh37
Build 361160,651,623 - 60,651,851RGDNCBI36
Celera1158,255,225 - 58,255,453RGD
Cytogenetic Map11q13UniSTS
HuRef1157,238,948 - 57,239,176UniSTS
TNG Radiation Hybrid Map1126806.0UniSTS
STS-X89405  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371160,870,184 - 60,870,380UniSTSGRCh37
Build 361160,626,760 - 60,626,956RGDNCBI36
Celera1158,230,652 - 58,230,848RGD
Cytogenetic Map11q13UniSTS
HuRef1157,214,648 - 57,214,844UniSTS
GeneMap99-GB4 RH Map11227.59UniSTS
D11S4363  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371160,894,069 - 60,894,412UniSTSGRCh37
Build 361160,650,645 - 60,650,988RGDNCBI36
Celera1158,254,247 - 58,254,590RGD
Cytogenetic Map11q13UniSTS
HuRef1157,237,970 - 57,238,313UniSTS
Stanford-G3 RH Map112617.0UniSTS
Whitehead-YAC Contig Map11 UniSTS
GeneMap99-G3 RH Map112617.0UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2373 2775 2222 4730 1698 2226 2 608 1776 445 2122 6988 6259 16 3635 1 800 1667 1515 171 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001346456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_014207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ237927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ237928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ237929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ237930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ237931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ237932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK292698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP000437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY541703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY541704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB143341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF064752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ901015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN159853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC877421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X04391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X89405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000347785   ⟹   ENSP00000342681
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1161,102,489 - 61,127,852 (+)Ensembl
Ensembl Acc Id: ENST00000544014   ⟹   ENSP00000440899
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1161,102,509 - 61,119,359 (+)Ensembl
RefSeq Acc Id: NM_001346456   ⟹   NP_001333385
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381161,093,963 - 61,127,852 (+)NCBI
T2T-CHM13v2.01161,045,145 - 61,079,346 (+)NCBI
Sequence:
RefSeq Acc Id: NM_014207   ⟹   NP_055022
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381161,102,489 - 61,127,852 (+)NCBI
GRCh371160,869,930 - 60,895,324 (+)ENTREZGENE
Build 361160,626,543 - 60,651,900 (+)NCBI Archive
HuRef1157,229,625 - 57,239,225 (+)ENTREZGENE
CHM1_11160,734,232 - 60,759,595 (+)NCBI
T2T-CHM13v2.01161,054,012 - 61,079,346 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001333385 (Get FASTA)   NCBI Sequence Viewer  
  NP_055022 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH27901 (Get FASTA)   NCBI Sequence Viewer  
  AAS55053 (Get FASTA)   NCBI Sequence Viewer  
  ABK41935 (Get FASTA)   NCBI Sequence Viewer  
  ADO22532 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67686 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67687 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67688 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67689 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67690 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67691 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67692 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67693 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67694 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67695 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67696 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67697 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67698 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67699 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67700 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67701 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67702 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67703 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67704 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67705 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67706 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67707 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67708 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67709 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67710 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67711 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67712 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67713 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67714 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67715 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67716 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67717 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67718 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67719 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67720 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67721 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67722 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67723 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67724 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67725 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67726 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67727 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67728 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67729 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67730 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67731 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67732 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67733 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67734 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67735 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67736 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67737 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67738 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67739 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67740 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67741 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67742 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67743 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67744 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67745 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67746 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67747 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67748 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67749 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67750 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67751 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67752 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67753 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67754 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67755 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67756 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67757 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67758 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67759 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67760 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67761 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67762 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67763 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67764 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67765 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67766 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67767 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67768 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67769 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67770 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67771 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67772 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67773 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67774 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67775 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67776 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67777 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67778 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67779 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67780 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67781 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67782 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67783 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67784 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67785 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67786 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67787 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67788 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67789 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67790 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67791 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67792 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67793 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67794 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67795 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67796 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67797 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67798 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67799 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67800 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67801 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67802 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67803 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67804 (Get FASTA)   NCBI Sequence Viewer  
  AEZ67805 (Get FASTA)   NCBI Sequence Viewer  
  BAF85387 (Get FASTA)   NCBI Sequence Viewer  
  CAA27979 (Get FASTA)   NCBI Sequence Viewer  
  CAA61584 (Get FASTA)   NCBI Sequence Viewer  
  EAW73924 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000342681
  ENSP00000342681.3
  ENSP00000440899.1
GenBank Protein P06127 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_055022   ⟸   NM_014207
- Peptide Label: isoform 1 precursor
- UniProtKB: A0N0P4 (UniProtKB/Swiss-Prot),   A8K9I3 (UniProtKB/Swiss-Prot),   P06127 (UniProtKB/Swiss-Prot),   A0A384ME09 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001333385   ⟸   NM_001346456
- Peptide Label: isoform 2
- UniProtKB: H6D9U9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000440899   ⟸   ENST00000544014
Ensembl Acc Id: ENSP00000342681   ⟸   ENST00000347785
Protein Domains
SRCR

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P06127-F1-model_v2 AlphaFold P06127 1-495 view protein structure

Promoters
RGD ID:6788597
Promoter ID:HG_KWN:13039
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour
Transcripts:NM_014207
Position:
Human AssemblyChrPosition (strand)Source
Build 361160,626,359 - 60,626,859 (+)MPROMDB
RGD ID:7220511
Promoter ID:EPDNEW_H16001
Type:initiation region
Name:CD5_1
Description:CD5 molecule
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381161,102,489 - 61,102,549EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:1685 AgrOrtholog
COSMIC CD5 COSMIC
Ensembl Genes ENSG00000110448 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000347785 ENTREZGENE
  ENST00000347785.8 UniProtKB/Swiss-Prot
  ENST00000544014.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.250.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000110448 GTEx
HGNC ID HGNC:1685 ENTREZGENE
Human Proteome Map CD5 Human Proteome Map
InterPro SRCR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SRCR-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SRCR-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tcell_CD5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:921 UniProtKB/Swiss-Prot
NCBI Gene 921 ENTREZGENE
OMIM 153340 OMIM
PANTHER PTHR47309 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  T-CELL SURFACE GLYCOPROTEIN CD5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SRCR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA26224 PharmGKB
PRINTS SPERACTRCPTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TCELLCD5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE SRCR_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00202 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56487 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A384ME09 ENTREZGENE, UniProtKB/TrEMBL
  A0N0P4 ENTREZGENE
  A8K9I3 ENTREZGENE
  CD5_HUMAN UniProtKB/Swiss-Prot
  F5GYK3_HUMAN UniProtKB/TrEMBL
  H6D9T5_HUMAN UniProtKB/TrEMBL
  H6D9U9 ENTREZGENE, UniProtKB/TrEMBL
  H6D9X2_HUMAN UniProtKB/TrEMBL
  H6D9Y3_HUMAN UniProtKB/TrEMBL
  H6DA10_HUMAN UniProtKB/TrEMBL
  H6DA16_HUMAN UniProtKB/TrEMBL
  H6DA28_HUMAN UniProtKB/TrEMBL
  H6DA29_HUMAN UniProtKB/TrEMBL
  H6DA51_HUMAN UniProtKB/TrEMBL
  P06127 ENTREZGENE
UniProt Secondary A0N0P4 UniProtKB/Swiss-Prot
  A8K9I3 UniProtKB/Swiss-Prot