Cd5 (CD5 molecule) - Rat Genome Database

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Gene: Cd5 (CD5 molecule) Heterocephalus glaber
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Symbol: Cd5
Name: CD5 molecule
RGD ID: 18922294
Description: INVOLVED IN apoptotic signaling pathway (ortholog); negative regulation of B cell receptor signaling pathway (ortholog); T cell costimulation (ortholog); ASSOCIATED WITH B-Cell Chronic Lymphocytic Leukemia (ortholog); cervical cancer (ortholog); ovarian serous cystadenocarcinoma (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: T-cell surface glycoprotein CD5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624926373,694 - 381,596 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_004624926374,819 - 380,943 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cd5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624926373,694 - 381,596 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_004624926374,819 - 380,943 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
CD5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381161,093,963 - 61,127,852 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1161,102,466 - 61,127,952 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371160,861,435 - 60,895,324 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361160,626,543 - 60,651,900 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341160,626,542 - 60,651,897NCBI
Celera1158,230,398 - 58,255,502 (+)NCBICelera
Cytogenetic Map11q12.2NCBI
HuRef1157,229,625 - 57,239,225 (+)NCBIHuRef
CHM1_11160,734,232 - 60,759,595 (+)NCBICHM1_1
T2T-CHM13v2.01161,045,145 - 61,079,346 (+)NCBIT2T-CHM13v2.0
Cd5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391910,695,471 - 10,716,390 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1910,694,480 - 10,716,366 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381910,718,107 - 10,739,026 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1910,717,116 - 10,739,002 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv371910,792,633 - 10,813,464 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361910,785,188 - 10,806,019 (-)NCBIMGSCv36mm8
Celera1911,417,945 - 11,438,925 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map197.16NCBI
Cd5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81216,790,245 - 216,811,209 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1216,790,245 - 216,811,209 (-)EnsemblGRCr8
mRatBN7.21207,365,337 - 207,386,313 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1207,365,337 - 207,386,313 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1215,743,950 - 215,764,911 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01222,799,530 - 222,820,538 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01215,494,529 - 215,515,538 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1216,151,068 - 216,172,031 (-)NCBI
Lyon_Normotensive1221,060,159 - 221,081,125 (-)NCBI
Lyon_Hypertensive1217,814,521 - 217,835,486 (-)NCBI
F344_StmMcwi1216,041,314 - 216,062,278 (-)NCBI
Rnor_6.01226,770,912 - 226,791,861 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1226,770,744 - 226,791,879 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01233,835,586 - 233,856,535 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41213,213,327 - 213,234,277 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1204,858,319 - 204,879,274 (-)NCBICelera
RGSC_v3.11213,371,756 - 213,392,707 (-)NCBI
RH 3.4 Map11510.5RGD
Cytogenetic Map1q43NCBI
Cd5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555115,664,682 - 5,669,368 (+)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049555115,656,333 - 5,670,510 (+)NCBIChiLan1.0ChiLan1.0
CD5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2962,268,427 - 62,294,553 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11163,312,514 - 63,338,350 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01156,362,415 - 56,388,469 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11159,795,290 - 59,826,448 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1159,801,808 - 59,826,448 (+)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
CD5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11855,216,415 - 55,235,567 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1855,217,276 - 55,235,405 (-)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1853,788,355 - 53,808,734 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01856,263,766 - 56,284,145 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1856,265,057 - 56,284,043 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11855,321,635 - 55,341,987 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01854,942,998 - 54,963,371 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01855,824,104 - 55,844,496 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cd5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap1411,601,241 - 11,629,030 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_02440494711,739,583 - 11,753,021 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365811,854,460 - 1,873,142 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365811,854,166 - 1,866,843 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl210,648,974 - 10,673,919 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1210,648,973 - 10,673,479 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2210,251,315 - 10,262,364 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap1112,703,268 - 12,734,588 (-)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_023666038110,084,145 - 110,097,718 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.1112,720,004 - 12,747,637 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl112,719,333 - 12,746,960 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Cd5
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1210,199,345 - 10,212,495 (-)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021251863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01104926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000027694   ⟹   ENSHGLP00000027451
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624926374,819 - 380,943 (+)Ensembl
RefSeq Acc Id: XM_021251863   ⟹   XP_021107522
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624926373,694 - 381,596 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021107522 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021107522   ⟸   XM_021251863
- UniProtKB: A0AAX6SF41 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000027451   ⟸   ENSHGLT00000027694


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019522 Ensembl
Gene3D-CATH SRCR-like domain UniProtKB/TrEMBL
InterPro SRCR UniProtKB/TrEMBL
  SRCR-like_dom_sf UniProtKB/TrEMBL
  Tcell_CD5 UniProtKB/TrEMBL
NCBI Gene Cd5 ENTREZGENE
PANTHER T-CELL SURFACE GLYCOPROTEIN CD5 UniProtKB/TrEMBL
  T-CELL SURFACE GLYCOPROTEIN CD5 UniProtKB/TrEMBL
Pfam SRCR UniProtKB/TrEMBL
PRINTS SPERACTRCPTR UniProtKB/TrEMBL
  TCELLCD5 UniProtKB/TrEMBL
PROSITE SRCR_2 UniProtKB/TrEMBL
SMART SM00202 UniProtKB/TrEMBL
Superfamily-SCOP SRCR-like UniProtKB/TrEMBL
UniProt A0AAX6SF41 ENTREZGENE, UniProtKB/TrEMBL