RGD:155961456 Rat Genome Database

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Variant: RGD:155961456 -  Homo sapiens

RGD ID: 155961456
ClinVar ID: CV2200655
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: CD5  
Reference Nucleotide: C
Variant Nucleotide: T
Position
Assembly Chr Position
GRCh37 11 60,885,667
GRCh38 11 61,118,195
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
NM_001346456.2:c.-57C>T
NM_014207.4:c.115C>T
NC_000011.10:g.61118195C>T
NC_000011.9:g.60885667C>T
More... 		10/12/2022 5 prime utr variant uncertain significance AllHighlyPenetrant

Variant Details
Variant Transcripts
Gene Symbol:CD5
Accession:NM_001346456
Location:5UTRS;EXON

Gene Symbol:CD5
Accession:NM_014207
Location:EXON
Amino Acid Prediction: R to C (nonsynonymous)
Amino Acid Position: 39
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MPMGSLQPLATLYLLGMLVASCLGRLSWYDPDFQARLTCSNSKCQGQLEVYLKDGWHMVCSQSWGRSSKQWEDPSQASKV
CQRLNCGVPLSLGPFLVTYTPQSSIICYGQLGSFSNCSHSRNDMCHSLGLTCLEPQKTTPPTTRPPPTTTPEPTAPPRLQ
LVAQSGGQHCAGVVEFYSGSLGGTISYEAQDKTQDLENFLCNNLQCGSFLKHLPETEAGRAQDPGEPREHQPLPIQWKIQ
NSSCTSLEHCFRKIKPQKSGRVLALLCSGFQPKVQSRLVGGSSICEGTVEVRQGAQWAALCDSSSARSSLRWEEVCREQQ
CGSVNSYRVLDAGDPTSRGLFCPHQKLSQCHELWERNSYCKKVFVTCQDPNPAGLAAGTVASIILALVLLVVLLVVCGPL
AYKKLVKKFRQKKQRQWIGPTGMNQNMSFHRNHTATVRSHAENPTASHVDNEYSQPPRNSHLSAYPALEGALHRSSMQPD
NSSDSDYDLHGAQRL*
Variant Samples

Additional Information

Database Acc Id Source(s)
ClinVar RCV004081317 CLINVAR
MedGen CN169374 CLINVAR
NCBI Gene CD5 CLINVAR
OMIM 153340 CLINVAR