Nfasc (neurofascin) - Rat Genome Database

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Gene: Nfasc (neurofascin) Mus musculus
Analyze
Symbol: Nfasc
Name: neurofascin
RGD ID: 736244
MGI Page MGI
Description: Enables protein binding activity involved in heterotypic cell-cell adhesion. Involved in paranodal junction assembly. Acts upstream of or within several processes, including neuron development; protein localization to axon; and transmission of nerve impulse. Located in several cellular components, including main axon; paranodal junction; and septate junction. Is expressed in nervous system and neural retina. Orthologous to human NFASC (neurofascin).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: AA387016; D430023G06Rik; mKIAA0756; NF
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391132,492,428 - 132,669,567 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1132,492,428 - 132,669,535 (-)EnsemblGRCm39 Ensembl
GRCm381132,564,690 - 132,741,848 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1132,564,690 - 132,741,797 (-)EnsemblGRCm38mm10GRCm38
MGSCv371134,461,267 - 134,638,374 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361134,397,532 - 134,569,311 (-)NCBIMGSCv36mm8
Celera1135,173,259 - 135,350,595 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NfascMouseautistic disorder  ISONFASC (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
NfascMousefamilial adult myoclonic epilepsy 5  ISONFASC (Homo sapiens)8554872ClinVar Annotator: match by term: Epilepsy more ...ClinVarPMID:28492532
NfascMousegastrointestinal stromal tumor  ISONFASC (Homo sapiens)8554872ClinVar Annotator: match by term: Gastrointestinal stromal tumorClinVarPMID:28492532
NfascMousegenetic disease  ISONFASC (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
NfascMouseHypokalemic Periodic Paralysis, Type 1  ISONFASC (Homo sapiens)8554872ClinVar Annotator: match by term: Hypokalemic periodic paralysis and type 1ClinVarPMID:28492532
NfascMouseNeurodevelopmental Disorder with Central and Peripheral Motor Dysfunction  ISONFASC (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25741868 more ...
NfascMouseneuromuscular disease  ISONFASC (Homo sapiens)8554872ClinVar Annotator: match by term: Neuromuscular diseaseClinVarPMID:25741868
NfascMouseparathyroid carcinoma  ISONFASC (Homo sapiens)8554872ClinVar Annotator: match by term: Parathyroid carcinomaClinVarPMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NfascMouseNeurodevelopmental Disorder with Central and Peripheral Motor Dysfunction  ISONFASC (Homo sapiens)7240710 OMIM 

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Object Symbol
Species
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Reference
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Original Reference(s)
NfascMouse(1->4)-beta-D-glucan multiple interactionsEXP 6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of NFASC mRNACTDPMID:36331819
NfascMouse17beta-estradiol affects expressionISONFASC (Homo sapiens)6480464Estradiol affects the expression of NFASC mRNACTDPMID:22574217
NfascMouse2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of NFASC mRNACTDPMID:28922406
NfascMouse2,3,7,8-tetrachlorodibenzodioxine decreases expressionISONfasc (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in decreased expression of NFASC mRNACTDPMID:33387578
NfascMouse6-propyl-2-thiouracil decreases expressionISONfasc (Rattus norvegicus)6480464Propylthiouracil results in decreased expression of NFASC mRNACTDPMID:24780913 and PMID:25825206
NfascMouseaflatoxin B1 decreases expressionISONFASC (Homo sapiens)6480464Aflatoxin B1 results in decreased expression of NFASC mRNACTDPMID:22100608 and PMID:32234424
NfascMouseaflatoxin B1 decreases methylationISONFASC (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of NFASC gene and Aflatoxin B1 results in decreased methylation of NFASC intronCTDPMID:27153756 and PMID:30157460
NfascMouseall-trans-retinoic acid increases expressionISONFASC (Homo sapiens)6480464Tretinoin results in increased expression of NFASC mRNACTDPMID:21934132
NfascMouseamitrole decreases expressionISONfasc (Rattus norvegicus)6480464Amitrole results in decreased expression of NFASC mRNACTDPMID:38685447
NfascMouseammonium chloride affects expressionISONfasc (Rattus norvegicus)6480464Ammonium Chloride affects the expression of NFASC mRNACTDPMID:16483693
NfascMousearsane affects methylationISONFASC (Homo sapiens)6480464Arsenic affects the methylation of NFASC geneCTDPMID:25304211
NfascMousearsenic atom affects methylationISONFASC (Homo sapiens)6480464Arsenic affects the methylation of NFASC geneCTDPMID:25304211
NfascMouseatrazine affects methylationISONfasc (Rattus norvegicus)6480464Atrazine affects the methylation of NFASC geneCTDPMID:35440735
NfascMousebenzo[a]pyrene decreases expressionEXP 6480464Benzo(a)pyrene results in decreased expression of NFASC mRNACTDPMID:20127859
NfascMousebenzo[a]pyrene decreases expressionISONFASC (Homo sapiens)6480464Benzo(a)pyrene results in decreased expression of NFASC mRNACTDPMID:32234424
NfascMousebenzo[a]pyrene decreases methylationISONFASC (Homo sapiens)6480464Benzo(a)pyrene results in decreased methylation of NFASC 3' UTRCTDPMID:27901495
NfascMousebenzo[a]pyrene increases methylationISONFASC (Homo sapiens)6480464Benzo(a)pyrene results in increased methylation of NFASC exonCTDPMID:27901495
NfascMousebenzo[a]pyrene affects methylationISONFASC (Homo sapiens)6480464Benzo(a)pyrene affects the methylation of NFASC 5' UTR and Benzo(a)pyrene affects the methylation of NFASC promoterCTDPMID:27901495
NfascMousebenzo[e]pyrene increases methylationISONFASC (Homo sapiens)6480464benzo(e)pyrene results in increased methylation of NFASC intronCTDPMID:30157460
NfascMousebisphenol A decreases expressionISONfasc (Rattus norvegicus)6480464bisphenol A results in decreased expression of NFASC mRNACTDPMID:25181051

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Biological Process
1 to 16 of 16 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NfascMouseaxon guidance acts_upstream_of_or_withinIDA 2290270 PMID:15479642MGIPMID:15479642
NfascMouseaxon guidance involved_inIBAPANTHER:PTN008688141 more ...2290270 GO_CentralGO_REF:0000033
NfascMousebrain development involved_inIBAPANTHER:PTN002891747 more ...2290270 GO_CentralGO_REF:0000033
NfascMousecell-cell adhesion involved_inIBAPANTHER:PTN002548291 more ...2290270 GO_CentralGO_REF:0000033
NfascMouseclustering of voltage-gated sodium channels acts_upstream_of_or_withinIMPMGI:38085982290270 PMID:20188654MGIPMID:20188654
NfascMouseheterotypic cell-cell adhesion involved_inIEAGO:00860802290270 GOCGO_REF:0000108
NfascMousemyelination involved_inISONfasc (Rattus norvegicus)9068941PMID:16652168BHF-UCLPMID:16652168 and REF_RGD_ID:8553545
NfascMouseparanodal junction assembly involved_inIMP 2290270 PMID:19185024UniProtPMID:19185024
NfascMouseparanodal junction assembly acts_upstream_of_or_withinIMPMGI:38085982290270 PMID:16337912MGIPMID:16337912
NfascMouseparanodal junction assembly acts_upstream_of_or_withinIMPMGI:48376202290270 PMID:20371806MGIPMID:20371806
NfascMouseperipheral nervous system development involved_inISONfasc (Rattus norvegicus)9068941PMID:16652168BHF-UCLPMID:16652168 and REF_RGD_ID:8553545
NfascMouseprotein localization to juxtaparanode region of axon acts_upstream_of_or_withinIMPMGI:48376202290270 PMID:20371806MGIPMID:20371806
NfascMouseprotein localization to paranode region of axon acts_upstream_of_or_withinIMPMGI:48376202290270 PMID:20371806MGIPMID:20371806
NfascMouseprotein localization to plasma membrane involved_inISONfasc (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
NfascMousesynapse organization acts_upstream_of_or_withinIMP 2290270 PMID:15479642MGIPMID:15479642
NfascMousetransmission of nerve impulse acts_upstream_of_or_withinIMPMGI:38085982290270 PMID:16337912MGIPMID:16337912
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Cellular Component
1 to 20 of 22 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NfascMouseaxon  ISONfasc (Rattus norvegicus)9068941 RGDPMID:22649224 and REF_RGD_ID:12904752
NfascMouseaxon located_inIDA 2290270 PMID:15479642 and PMID:16701205MGIPMID:15479642 and PMID:16701205
NfascMouseaxon located_inISONfasc (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
NfascMouseaxon is_active_inIBAPANTHER:PTN008688141 more ...2290270 GO_CentralGO_REF:0000033
NfascMouseaxon initial segment  ISONfasc (Rattus norvegicus)9068941 RGDPMID:22649224 and REF_RGD_ID:12904752
NfascMouseaxon initial segment located_inIDA 2290270 PMID:26671463MGIPMID:26671463
NfascMouseaxon initial segment located_inISONfasc (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
NfascMousedendrite  ISONfasc (Rattus norvegicus)9068941 RGDPMID:22649224 and REF_RGD_ID:12904752
NfascMousedendrite located_inISONfasc (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
NfascMousemyelin sheath located_inHDA 2290270 PMID:17634366UniProtPMID:17634366
NfascMousenode of Ranvier located_inISONfasc (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
NfascMousenode of Ranvier located_inIDA 2290270 PMID:19185024 and PMID:25653379UniProtPMID:19185024 and PMID:25653379
NfascMousenode of Ranvier  ISONfasc (Rattus norvegicus)9068941MMO:0000538RGDPMID:17709431 and REF_RGD_ID:14392774
NfascMouseparanodal junction located_inIDA 2290270 PMID:18048693 and PMID:19185024UniProtPMID:18048693 and PMID:19185024
NfascMouseparanode region of axon located_inIDA 2290270 PMID:12975355 and PMID:16723544BHF-UCLPMID:12975355 and PMID:16723544
NfascMouseplasma membrane located_inISONfasc (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
NfascMouseplasma membrane located_inIDA 2290270 PMID:15479642MGIPMID:15479642
NfascMouseplasma membrane located_inTAS 2290270 ReactomeReactome:R-MMU-373731
NfascMouseplasma membrane is_active_inIBAPANTHER:PTN008688141 more ...2290270 GO_CentralGO_REF:0000033
NfascMouseplasma membrane located_inISOUniProtKB:O948562290270 GO_CentralGO_REF:0000119
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Molecular Function

  

1 to 20 of 34 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NfascMouseabnormal action potential  IAGP 5509061 MGIPMID:21382554
NfascMouseabnormal axon initial segment morphology  IAGP 5509061 MGIPMID:21382554
NfascMouseabnormal axon morphology  IAGP 5509061 MGIPMID:18573915
NfascMouseabnormal axon morphology  IAGP 5509061 MGIPMID:20188654
NfascMouseabnormal axon morphology  IAGP 5509061 MGIPMID:19185024
NfascMouseabnormal gait  IAGP 5509061 MGIPMID:21382554
NfascMouseabnormal limb posture  IAGP 5509061 MGIPMID:19185024
NfascMouseabnormal motor capabilities/coordination/movement  IAGP 5509061 MGIPMID:19185024
NfascMouseabnormal motor coordination/balance  IAGP 5509061 MGIPMID:19185024
NfascMouseabnormal oligodendrocyte physiology  IAGP 5509061 MGIPMID:18573915
NfascMouseabnormal paranodal axoglial junction morphology  IAGP 5509061 MGIPMID:20371806
NfascMouseabnormal paranode morphology  IAGP 5509061 MGIPMID:20371806
NfascMouseabnormal Purkinje cell axon morphology  IAGP 5509061 MGIPMID:19185024
NfascMouseabnormal sciatic nerve morphology  IAGP 5509061 MGIPMID:16337912
NfascMouseabnormal synapse morphology  IAGP 5509061 MGIPMID:21382554
NfascMouseataxia  IAGP 5509061 MGIPMID:20371806
NfascMousedecreased locomotor activity  IAGP 5509061 MGIPMID:19185024
NfascMousedecreased nerve conduction velocity  IAGP 5509061 MGIPMID:16337912
NfascMousedecreased nerve conduction velocity  IAGP 5509061 MGIPMID:19185024
NfascMouseimpaired ability to fire action potentials  IAGP 5509061 MGIPMID:21382554
1 to 20 of 34 rows

#
Reference Title
Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Aug 31;10(4):167-80.
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:7706555   PMID:7738015   PMID:8672144   PMID:8889548   PMID:9651528   PMID:10349636   PMID:10662501   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11839274   PMID:12477932  
PMID:12975355   PMID:14610273   PMID:15479642   PMID:15572359   PMID:15601927   PMID:16141072   PMID:16141073   PMID:16337912   PMID:16701205   PMID:16723544   PMID:17634366   PMID:17934213  
PMID:18048693   PMID:18573915   PMID:18579745   PMID:18799693   PMID:19185024   PMID:19625254   PMID:19666467   PMID:20129933   PMID:20188654   PMID:20371806   PMID:21262464   PMID:21267068  
PMID:21382554   PMID:21873635   PMID:22492029   PMID:22579729   PMID:22746206   PMID:22794259   PMID:23728480   PMID:23897819   PMID:24081651   PMID:24719087   PMID:24952961   PMID:25232125  
PMID:25362471   PMID:25561543   PMID:25653379   PMID:26406915   PMID:26647347   PMID:26671463   PMID:26780092   PMID:27053216   PMID:27507650   PMID:27583434   PMID:28134616   PMID:28217083  
PMID:28671696   PMID:29963618   PMID:30025158   PMID:30124836   PMID:31142747   PMID:31427429   PMID:31761670   PMID:31910261   PMID:32266943   PMID:32325033   PMID:32554548   PMID:32581705  
PMID:32903174   PMID:33601422   PMID:34321999   PMID:34709416   PMID:36085162   PMID:37142655   PMID:38309265   PMID:38355793  



Nfasc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391132,492,428 - 132,669,567 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1132,492,428 - 132,669,535 (-)EnsemblGRCm39 Ensembl
GRCm381132,564,690 - 132,741,848 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1132,564,690 - 132,741,797 (-)EnsemblGRCm38mm10GRCm38
MGSCv371134,461,267 - 134,638,374 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361134,397,532 - 134,569,311 (-)NCBIMGSCv36mm8
Celera1135,173,259 - 135,350,595 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.42NCBI
NFASC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381204,828,652 - 205,022,822 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1204,828,651 - 205,022,822 (+)EnsemblGRCh38hg38GRCh38
GRCh371204,797,780 - 204,991,950 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361203,064,446 - 203,258,572 (+)NCBINCBI36Build 36hg18NCBI36
Build 341201,529,438 - 201,723,621NCBI
Celera1177,932,899 - 178,127,015 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1175,963,008 - 176,157,672 (+)NCBIHuRef
CHM1_11206,221,207 - 206,415,296 (+)NCBICHM1_1
T2T-CHM13v2.01204,093,027 - 204,287,188 (+)NCBIT2T-CHM13v2.0
Nfasc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81346,549,369 - 46,735,989 (-)NCBIGRCr8
mRatBN7.21343,997,223 - 44,183,863 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1343,997,224 - 44,183,880 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1346,604,239 - 46,790,787 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01347,892,367 - 48,078,923 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01345,153,052 - 45,339,618 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01349,335,407 - 49,522,474 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1349,335,408 - 49,522,415 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01354,410,796 - 54,597,394 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41345,450,550 - 45,637,877 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11345,470,231 - 45,543,152 (-)NCBI
Celera1344,330,874 - 44,517,354 (-)NCBICelera
Cytogenetic Map13q13NCBI
Nfasc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540640,743,872 - 40,808,962 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540640,632,971 - 40,814,930 (+)NCBIChiLan1.0ChiLan1.0
NFASC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2144,353,873 - 44,548,361 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1144,319,117 - 44,513,623 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01180,430,523 - 180,624,953 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11184,760,032 - 184,911,633 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1184,759,115 - 184,905,467 (+)Ensemblpanpan1.1panPan2
NFASC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1381,367,128 - 1,546,909 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl381,366,251 - 1,543,630 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha381,461,694 - 1,641,383 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0381,364,188 - 1,541,272 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl381,364,084 - 1,543,725 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1381,360,848 - 1,540,002 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0381,751,583 - 1,931,202 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0381,951,355 - 2,128,798 (+)NCBIUU_Cfam_GSD_1.0
Nfasc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934470,105,531 - 70,244,171 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365577,350,114 - 7,437,722 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365577,345,813 - 7,437,654 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NFASC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl965,502,259 - 65,713,518 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1965,502,565 - 65,715,612 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2971,839,754 - 71,915,485 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NFASC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12524,315,877 - 24,516,524 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2524,321,574 - 24,474,635 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605525,072,883 - 25,274,060 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nfasc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248076,103,524 - 6,226,583 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248076,097,507 - 6,260,880 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Nfasc
10596 total Variants

Predicted Target Of
Summary Value
Count of predictions:8228
Count of miRNA genes:862
Interacting mature miRNAs:1230
Transcripts:ENSMUST00000043189, ENSMUST00000094569, ENSMUST00000163770
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 43 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1302161Exq2_mexploratory and excitability QTL 2 (mouse)Not determined1118099720152099816Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
27226714Metcl1_mmetatarsal-calcaneal length 1, 5 week (mouse)1121727729139727738Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1301979Melm1_mmelanoma modifier 1 (mouse)Not determined1109638262143638479Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse

1 to 10 of 43 rows
RH132614  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381132,564,795 - 132,564,977UniSTSGRCm38
MGSCv371134,461,372 - 134,461,554UniSTSGRCm37
Celera1135,173,364 - 135,173,546UniSTS
Cytogenetic Map1E4UniSTS
cM Map170.0UniSTS
UniSTS:234213  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381132,569,594 - 132,569,936UniSTSGRCm38
MGSCv371134,466,171 - 134,466,513UniSTSGRCm37
Celera1135,178,163 - 135,178,505UniSTS
Cytogenetic Map1E4UniSTS
cM Map170.0UniSTS
UniSTS:234218  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381132,599,417 - 132,599,736UniSTSGRCm38
MGSCv371134,495,994 - 134,496,313UniSTSGRCm37
Celera1135,208,195 - 135,208,514UniSTS
Cytogenetic Map1E4UniSTS
cM Map170.0UniSTS






1 to 30 of 57 rows
RefSeq Transcripts NM_001160316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001160317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001160318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_182716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 57 rows

Ensembl Acc Id: ENSMUST00000043189   ⟹   ENSMUSP00000035454
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1132,496,987 - 132,635,064 (-)Ensembl
GRCm38.p6 Ensembl1132,569,249 - 132,707,326 (-)Ensembl
Ensembl Acc Id: ENSMUST00000094569   ⟹   ENSMUSP00000092148
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1132,492,428 - 132,669,495 (-)Ensembl
GRCm38.p6 Ensembl1132,564,690 - 132,741,757 (-)Ensembl
Ensembl Acc Id: ENSMUST00000163770   ⟹   ENSMUSP00000132979
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1132,498,072 - 132,669,501 (-)Ensembl
GRCm38.p6 Ensembl1132,570,334 - 132,741,763 (-)Ensembl
Ensembl Acc Id: ENSMUST00000186330
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1132,504,062 - 132,514,878 (-)Ensembl
GRCm38.p6 Ensembl1132,576,324 - 132,587,140 (-)Ensembl
Ensembl Acc Id: ENSMUST00000186389   ⟹   ENSMUSP00000140480
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1132,498,161 - 132,564,829 (-)Ensembl
GRCm38.p6 Ensembl1132,570,423 - 132,637,091 (-)Ensembl
Ensembl Acc Id: ENSMUST00000186539
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1132,529,372 - 132,532,897 (-)Ensembl
GRCm38.p6 Ensembl1132,601,634 - 132,605,159 (-)Ensembl
Ensembl Acc Id: ENSMUST00000187861   ⟹   ENSMUSP00000139955
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1132,497,782 - 132,635,144 (-)Ensembl
GRCm38.p6 Ensembl1132,570,044 - 132,707,406 (-)Ensembl
Ensembl Acc Id: ENSMUST00000188307   ⟹   ENSMUSP00000139520
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1132,527,573 - 132,669,535 (-)Ensembl
GRCm38.p6 Ensembl1132,599,835 - 132,741,797 (-)Ensembl
Ensembl Acc Id: ENSMUST00000189219
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1132,592,594 - 132,669,516 (-)Ensembl
GRCm38.p6 Ensembl1132,664,856 - 132,741,778 (-)Ensembl
Ensembl Acc Id: ENSMUST00000191294
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1132,547,118 - 132,552,250 (-)Ensembl
GRCm38.p6 Ensembl1132,619,380 - 132,624,512 (-)Ensembl
RefSeq Acc Id: NM_001160316   ⟹   NP_001153788
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,570,596 (-)NCBI
GRCm381132,564,690 - 132,642,858 (-)NCBI
MGSCv371134,461,267 - 134,638,374 (-)RGD
Celera1135,173,259 - 135,350,595 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001160317   ⟹   NP_001153789
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,535 (-)NCBI
GRCm381132,564,690 - 132,741,797 (-)NCBI
MGSCv371134,461,267 - 134,638,374 (-)RGD
Celera1135,173,259 - 135,350,595 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001160318   ⟹   NP_001153790
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,635,064 (-)NCBI
GRCm381132,564,690 - 132,707,326 (-)NCBI
MGSCv371134,461,267 - 134,638,374 (-)RGD
Celera1135,173,259 - 135,350,595 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_182716   ⟹   NP_874385
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,535 (-)NCBI
GRCm381132,564,690 - 132,741,797 (-)NCBI
MGSCv371134,461,267 - 134,638,374 (-)RGD
Celera1135,173,259 - 135,350,595 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006529634   ⟹   XP_006529697
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,559 (-)NCBI
GRCm381132,564,690 - 132,741,829 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006529635   ⟹   XP_006529698
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,567 (-)NCBI
GRCm381132,564,690 - 132,741,829 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006529639   ⟹   XP_006529702
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,559 (-)NCBI
GRCm381132,564,690 - 132,741,829 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006529644   ⟹   XP_006529707
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,559 (-)NCBI
GRCm381132,564,690 - 132,741,829 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006529646   ⟹   XP_006529709
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,559 (-)NCBI
GRCm381132,564,690 - 132,741,827 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006529651   ⟹   XP_006529714
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,559 (-)NCBI
GRCm381132,564,690 - 132,741,827 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006529653   ⟹   XP_006529716
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,559 (-)NCBI
GRCm381132,564,690 - 132,741,827 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248011   ⟹   XP_011246313
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,559 (-)NCBI
GRCm381132,564,690 - 132,741,827 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248012   ⟹   XP_011246314
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,559 (-)NCBI
GRCm381132,564,690 - 132,741,829 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248013   ⟹   XP_011246315
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,559 (-)NCBI
GRCm381132,564,690 - 132,741,827 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248014   ⟹   XP_011246316
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,559 (-)NCBI
GRCm381132,564,690 - 132,741,829 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248015   ⟹   XP_011246317
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,559 (-)NCBI
GRCm381132,564,690 - 132,741,829 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248017   ⟹   XP_011246319
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,559 (-)NCBI
GRCm381132,564,690 - 132,741,829 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248019   ⟹   XP_011246321
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,521 (-)NCBI
GRCm381132,564,690 - 132,741,777 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248020   ⟹   XP_011246322
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,635,121 (-)NCBI
GRCm381132,564,690 - 132,707,433 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248021   ⟹   XP_011246323
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,529 (-)NCBI
GRCm381132,564,690 - 132,741,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248023   ⟹   XP_011246325
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,635,113 (-)NCBI
GRCm381132,564,690 - 132,707,178 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248024   ⟹   XP_011246326
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,433 (-)NCBI
GRCm381132,564,690 - 132,741,740 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248025   ⟹   XP_011246327
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,547,098 (-)NCBI
GRCm381132,564,690 - 132,619,360 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320900   ⟹   XP_017176389
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,559 (-)NCBI
GRCm381132,564,690 - 132,741,829 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320902   ⟹   XP_017176391
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,559 (-)NCBI
GRCm381132,564,690 - 132,741,829 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320909   ⟹   XP_017176398
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,534,804 - 132,669,559 (-)NCBI
GRCm381132,607,054 - 132,741,829 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254517   ⟹   XP_030110377
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,559 (-)NCBI
GRCm381132,564,690 - 132,741,827 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254521   ⟹   XP_030110381
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,559 (-)NCBI
GRCm381132,564,690 - 132,741,827 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254536   ⟹   XP_030110396
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,559 (-)NCBI
GRCm381132,564,690 - 132,741,829 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254547   ⟹   XP_030110407
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,515 (-)NCBI
GRCm381132,564,690 - 132,741,777 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254549   ⟹   XP_030110409
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,510 (-)NCBI
GRCm381132,564,690 - 132,741,754 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254551   ⟹   XP_030110411
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,635,061 (-)NCBI
GRCm381132,564,690 - 132,707,323 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254557   ⟹   XP_030110417
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,529 (-)NCBI
GRCm381132,564,690 - 132,741,775 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254559   ⟹   XP_030110419
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,559 (-)NCBI
GRCm381132,564,690 - 132,741,826 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254562   ⟹   XP_030110422
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,635,061 (-)NCBI
GRCm381132,564,690 - 132,707,323 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165345   ⟹   XP_036021238
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,559 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165357   ⟹   XP_036021250
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,559 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165362   ⟹   XP_036021255
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,635,113 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165369   ⟹   XP_036021262
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,635,052 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165375   ⟹   XP_036021268
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,635,121 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165381   ⟹   XP_036021274
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,635,011 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165385   ⟹   XP_036021278
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,567 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001784700
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,496,987 - 132,669,559 (-)NCBI
GRCm381132,564,690 - 132,741,829 (-)NCBI
Sequence:
RefSeq Acc Id: XR_387171
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,492,428 - 132,669,559 (-)NCBI
GRCm381132,564,690 - 132,741,829 (-)NCBI
Sequence:
1 to 30 of 55 rows
Protein RefSeqs NP_001153788 (Get FASTA)   NCBI Sequence Viewer  
  NP_001153789 (Get FASTA)   NCBI Sequence Viewer  
  NP_001153790 (Get FASTA)   NCBI Sequence Viewer  
  NP_874385 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529697 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529698 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529702 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529707 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529709 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529714 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529716 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246313 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246314 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246315 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246316 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246317 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246319 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246321 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246322 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246323 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246325 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246326 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246327 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176389 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176391 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176398 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110377 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110381 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110396 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110407 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 55 rows
1 to 5 of 48 rows
1 to 5 of 48 rows
RefSeq Acc Id: NP_874385   ⟸   NM_182716
- Peptide Label: isoform 1 precursor
- UniProtKB: Q810U3 (UniProtKB/Swiss-Prot),   A0A087WR56 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001153789   ⟸   NM_001160317
- Peptide Label: isoform 3 precursor
- UniProtKB: A0A087WR56 (UniProtKB/TrEMBL),   E9PW06 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001153790   ⟸   NM_001160318
- Peptide Label: isoform 4 precursor
- UniProtKB: A0A087WR56 (UniProtKB/TrEMBL),   E9Q171 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001153788   ⟸   NM_001160316
- Peptide Label: isoform 2 precursor
- UniProtKB: A0A087WR56 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529716   ⟸   XM_006529653
- Peptide Label: isoform X18
- UniProtKB: Q6ZQ54 (UniProtKB/TrEMBL)
- Sequence:
Name Modeler Protein Id AA Range Protein Structure
AF-Q810U3-F1-model_v2 AlphaFold Q810U3 1-1240 view protein structure

RGD ID:6874934
Promoter ID:EPDNEW_M918
Type:initiation region
Name:Nfasc_1
Description:Mus musculus neurofascin , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381132,741,790 - 132,741,850EPDNEW
RGD ID:6846629
Promoter ID:MM_ACW:2326
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NFASC.GSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361134,502,036 - 134,502,536 (-)MPROMDB
RGD ID:6818166
Promoter ID:MM_KWN:2083
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_001160316
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361134,539,886 - 134,540,386 (-)MPROMDB
RGD ID:6818168
Promoter ID:MM_KWN:2085
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_001160318
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361134,603,186 - 134,603,686 (-)MPROMDB
RGD ID:6818167
Promoter ID:MM_KWN:2087
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_001160317,   NM_182716,   UC007CPF.1,   UC007CPG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361134,638,061 - 134,638,561 (-)MPROMDB


1 to 40 of 47 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000026442 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000043189 ENTREZGENE
  ENSMUST00000094569 ENTREZGENE
  ENSMUST00000094569.11 UniProtKB/Swiss-Prot
  ENSMUST00000163770 ENTREZGENE
  ENSMUST00000186389 ENTREZGENE
  ENSMUST00000187861 ENTREZGENE
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
InterPro FN3_dom UniProtKB/Swiss-Prot
  FN3_sf UniProtKB/Swiss-Prot
  Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_I-set UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  Immunoglobulin UniProtKB/Swiss-Prot
  Neurofascin/L1/NrCAM_C UniProtKB/Swiss-Prot
  NFASC UniProtKB/Swiss-Prot
KEGG Report mmu:269116 UniProtKB/Swiss-Prot
MGD MGI:104753 ENTREZGENE
NCBI Gene Nfasc ENTREZGENE
PANTHER NEUROFASCIN UniProtKB/Swiss-Prot
  PROTEIN SIDEKICK UniProtKB/Swiss-Prot
Pfam Bravo_FIGEY UniProtKB/Swiss-Prot
  fn3 UniProtKB/Swiss-Prot
  I-set UniProtKB/Swiss-Prot
  Ig_3 UniProtKB/Swiss-Prot
  PF00047 UniProtKB/Swiss-Prot
PhenoGen Nfasc PhenoGen
PROSITE FN3 UniProtKB/Swiss-Prot
  IG_LIKE UniProtKB/Swiss-Prot
SMART FN3 UniProtKB/Swiss-Prot
  IGc2 UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot
  SSF49265 UniProtKB/Swiss-Prot
UniProt A0A087WNW2_MOUSE UniProtKB/TrEMBL
  A0A087WPX3 ENTREZGENE, UniProtKB/TrEMBL
  A0A087WR56 ENTREZGENE, UniProtKB/TrEMBL
1 to 40 of 47 rows