UXS1 (UDP-glucuronate decarboxylase 1) - Rat Genome Database

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Gene: UXS1 (UDP-glucuronate decarboxylase 1) Homo sapiens
Analyze
Symbol: UXS1
Name: UDP-glucuronate decarboxylase 1
RGD ID: 735996
HGNC Page HGNC:17729
Description: Enables NAD+ binding activity; UDP-glucuronate decarboxylase activity; and protein homodimerization activity. Involved in UDP-D-xylose biosynthetic process. Located in extracellular exosome. Part of catalytic complex.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FLJ23591; hUXS; hUXS1; SDR6E1; short chain dehydrogenase/reductase family 6E, member 12; UDP-glucuronic acid decarboxylase 1; UGD; UXS-1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382106,093,311 - 106,194,301 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2106,093,308 - 106,194,301 (-)EnsemblGRCh38hg38GRCh38
GRCh372106,709,767 - 106,810,757 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362106,076,191 - 106,177,227 (-)NCBINCBI36Build 36hg18NCBI36
Build 342106,168,277 - 106,269,313NCBI
Celera2100,910,185 - 101,011,254 (-)NCBICelera
Cytogenetic Map2q12.2NCBI
HuRef2100,479,737 - 100,580,558 (-)NCBIHuRef
CHM1_12106,714,842 - 106,815,643 (-)NCBICHM1_1
T2T-CHM13v2.02106,554,193 - 106,655,255 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
2. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8125298   PMID:11877387   PMID:12391314   PMID:12477932   PMID:12975309   PMID:14702039   PMID:15489334   PMID:15815621   PMID:16303743   PMID:16344560   PMID:19027726   PMID:19028698  
PMID:19199708   PMID:19913121   PMID:20379614   PMID:20628086   PMID:20877624   PMID:21294126   PMID:21653829   PMID:21873635   PMID:22810237   PMID:23072385   PMID:23656592   PMID:25521717  
PMID:26186194   PMID:27503909   PMID:27609421   PMID:28514442   PMID:28611215   PMID:30021884   PMID:30572598   PMID:31527615   PMID:32513696   PMID:33087821   PMID:33961781   PMID:34373451  
PMID:35271311   PMID:35337019   PMID:35696571   PMID:35944360   PMID:36215168   PMID:38030856  


Genomics

Comparative Map Data
UXS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382106,093,311 - 106,194,301 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2106,093,308 - 106,194,301 (-)EnsemblGRCh38hg38GRCh38
GRCh372106,709,767 - 106,810,757 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362106,076,191 - 106,177,227 (-)NCBINCBI36Build 36hg18NCBI36
Build 342106,168,277 - 106,269,313NCBI
Celera2100,910,185 - 101,011,254 (-)NCBICelera
Cytogenetic Map2q12.2NCBI
HuRef2100,479,737 - 100,580,558 (-)NCBIHuRef
CHM1_12106,714,842 - 106,815,643 (-)NCBICHM1_1
T2T-CHM13v2.02106,554,193 - 106,655,255 (-)NCBIT2T-CHM13v2.0
Uxs1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39143,786,121 - 43,866,999 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl143,786,126 - 43,866,960 (-)EnsemblGRCm39 Ensembl
GRCm38143,746,961 - 43,827,839 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl143,746,966 - 43,827,800 (-)EnsemblGRCm38mm10GRCm38
MGSCv37143,807,076 - 43,884,553 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36143,693,833 - 43,772,294 (-)NCBIMGSCv36mm8
Celera144,100,573 - 44,177,690 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map123.46NCBI
Uxs1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89740,929 - 818,310 (+)NCBIGRCr8
mRatBN7.29653,740 - 731,121 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9653,659 - 756,334 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx91,101,032 - 1,178,186 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.096,448,086 - 6,525,417 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.095,338,604 - 5,415,805 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0911,165,006 - 11,240,329 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl911,164,715 - 11,339,790 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0910,150,134 - 10,226,955 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera97,775,435 - 7,852,399 (-)NCBICelera
Cytogenetic Map9q11NCBI
Uxs1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547010,659,520 - 10,706,269 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547010,661,210 - 10,706,504 (-)NCBIChiLan1.0ChiLan1.0
UXS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21221,539,772 - 21,658,545 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A21,542,537 - 21,660,161 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A95,652,107 - 95,770,022 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A107,168,081 - 107,234,626 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A107,168,309 - 107,234,632 (-)Ensemblpanpan1.1panPan2
UXS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11037,342,675 - 37,407,725 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1037,342,746 - 37,407,252 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1037,238,647 - 37,332,207 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01038,164,639 - 38,257,518 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1038,164,685 - 38,257,471 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11037,896,777 - 37,989,649 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01038,173,540 - 38,266,403 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01038,367,280 - 38,460,904 (+)NCBIUU_Cfam_GSD_1.0
Uxs1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629292,409,779 - 92,504,443 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367294,916 - 99,818 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367295,056 - 99,755 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UXS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl348,870,948 - 48,940,721 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1348,871,036 - 48,940,736 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2351,082,501 - 51,149,409 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UXS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1149,692,449 - 9,808,837 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl149,713,123 - 9,808,764 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041177,415,766 - 177,532,870 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Uxs1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247499,969,492 - 10,021,913 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247499,969,500 - 10,021,931 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in UXS1
24 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 2q11.2-12.3(chr2:100378510-108472871)x3 copy number gain See cases [RCV000050836] Chr2:100378510..108472871 [GRCh38]
Chr2:100994972..109089327 [GRCh37]
Chr2:100361404..108455759 [NCBI36]
Chr2:2q11.2-12.3
pathogenic
GRCh38/hg38 2q12.2-12.3(chr2:105828398-108080417)x3 copy number gain See cases [RCV000052691] Chr2:105828398..108080417 [GRCh38]
Chr2:106444854..108696873 [GRCh37]
Chr2:105811286..108063305 [NCBI36]
Chr2:2q12.2-12.3
uncertain significance
GRCh38/hg38 2q11.2-13(chr2:97672522-110211318)x3 copy number gain See cases [RCV000052947] Chr2:97672522..110211318 [GRCh38]
Chr2:98288985..110968895 [GRCh37]
Chr2:97655417..110326184 [NCBI36]
Chr2:2q11.2-13
pathogenic
GRCh38/hg38 2q12.1-12.3(chr2:104381722-107312459)x1 copy number loss See cases [RCV000135282] Chr2:104381722..107312459 [GRCh38]
Chr2:104998180..107928915 [GRCh37]
Chr2:104364612..107295347 [NCBI36]
Chr2:2q12.1-12.3
likely pathogenic
GRCh38/hg38 2q12.1-12.2(chr2:105239034-106152100)x3 copy number gain See cases [RCV000135475] Chr2:105239034..106152100 [GRCh38]
Chr2:105855491..106768556 [GRCh37]
Chr2:105221923..106134988 [NCBI36]
Chr2:2q12.1-12.2
benign
GRCh38/hg38 2q11.2-13(chr2:101710825-110791418)x3 copy number gain See cases [RCV000138645] Chr2:101710825..110791418 [GRCh38]
Chr2:102327287..111548995 [GRCh37]
Chr2:101693719..111265466 [NCBI36]
Chr2:2q11.2-13
pathogenic
GRCh38/hg38 2q11.1-13(chr2:94678532-110602409)x3 copy number gain See cases [RCV000141075] Chr2:94678532..110602409 [GRCh38]
Chr2:95344257..111359986 [GRCh37]
Chr2:94707984..111076455 [NCBI36]
Chr2:2q11.1-13
pathogenic
GRCh38/hg38 2q11.2-12.2(chr2:100478285-106498909)x3 copy number gain See cases [RCV000141445] Chr2:100478285..106498909 [GRCh38]
Chr2:101094747..107115365 [GRCh37]
Chr2:100461179..106481797 [NCBI36]
Chr2:2q11.2-12.2
uncertain significance
GRCh38/hg38 2q12.2-12.3(chr2:106170872-106809420)x3 copy number gain See cases [RCV000142302] Chr2:106170872..106809420 [GRCh38]
Chr2:106787328..107425876 [GRCh37]
Chr2:106153760..106792308 [NCBI36]
Chr2:2q12.2-12.3
uncertain significance
GRCh37/hg19 2q12.2-14.1(chr2:106423310-115054828)x1 copy number loss See cases [RCV000240053] Chr2:106423310..115054828 [GRCh37]
Chr2:2q12.2-14.1
pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:14238-243048760)x3 copy number gain not provided [RCV000752802] Chr2:14238..243048760 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:15672-243101834)x3 copy number gain not provided [RCV000752804] Chr2:15672..243101834 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2q11.1-12.3(chr2:95529039-108518266) copy number gain See cases [RCV000449270] Chr2:95529039..108518266 [GRCh37]
Chr2:2q11.1-12.3
pathogenic
GRCh37/hg19 2q11.1-13(chr2:95327499-111370025)x4 copy number gain See cases [RCV000446842] Chr2:95327499..111370025 [GRCh37]
Chr2:2q11.1-13
pathogenic
GRCh37/hg19 2q12.2(chr2:106791392-107425876)x3 copy number gain See cases [RCV000448657] Chr2:106791392..107425876 [GRCh37]
Chr2:2q12.2
uncertain significance
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384) copy number gain See cases [RCV000512056] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2q12.2(chr2:106794872-107014384)x1 copy number loss See cases [RCV000511743] Chr2:106794872..107014384 [GRCh37]
Chr2:2q12.2
likely benign
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384)x3 copy number gain See cases [RCV000511212] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2q11.1-12.2(chr2:95518497-107186127) copy number gain See cases [RCV000511158] Chr2:95518497..107186127 [GRCh37]
Chr2:2q11.1-12.2
uncertain significance
GRCh37/hg19 2q12.1-24.3(chr2:104172062-168223828)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626436] Chr2:104172062..168223828 [GRCh37]
Chr2:2q12.1-24.3
drug response
GRCh37/hg19 2q12.2(chr2:106788511-107425876)x3 copy number gain not provided [RCV000682095] Chr2:106788511..107425876 [GRCh37]
Chr2:2q12.2
uncertain significance
GRCh37/hg19 2q11.1-13(chr2:96353030-114045463)x3 copy number gain not provided [RCV000682168] Chr2:96353030..114045463 [GRCh37]
Chr2:2q11.1-13
pathogenic
Single allele deletion not provided [RCV000714264] Chr2:40608411..146900718 [GRCh37]
Chr2:2p22.1-q22.3
likely pathogenic
GRCh37/hg19 2q12.2(chr2:106547252-106992981)x3 copy number gain not provided [RCV001005301] Chr2:106547252..106992981 [GRCh37]
Chr2:2q12.2
uncertain significance
GRCh37/hg19 2q12.2-12.3(chr2:106596090-107516533)x3 copy number gain not provided [RCV000848935] Chr2:106596090..107516533 [GRCh37]
Chr2:2q12.2-12.3
uncertain significance
GRCh37/hg19 2q12.1-12.2(chr2:102917327-106755564)x1 copy number loss not provided [RCV000848959] Chr2:102917327..106755564 [GRCh37]
Chr2:2q12.1-12.2
uncertain significance
GRCh37/hg19 2p25.3-q37.3(chr2:1-243199373) copy number gain Mosaic trisomy 2 [RCV002280628] Chr2:1..243199373 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2q12.2(chr2:106791212-107425876)x3 copy number gain not provided [RCV001827802] Chr2:106791212..107425876 [GRCh37]
Chr2:2q12.2
uncertain significance
GRCh37/hg19 2p25.1-q13(chr2:11504318-111365996)x1 copy number loss See cases [RCV002287563] Chr2:11504318..111365996 [GRCh37]
Chr2:2p25.1-q13
pathogenic
NM_001253875.2(UXS1):c.762A>C (p.Glu254Asp) single nucleotide variant Inborn genetic diseases [RCV002969282] Chr2:106112763 [GRCh38]
Chr2:106729219 [GRCh37]
Chr2:2q12.2
uncertain significance
NM_001253875.2(UXS1):c.925G>A (p.Asp309Asn) single nucleotide variant Inborn genetic diseases [RCV002732109] Chr2:106101117 [GRCh38]
Chr2:106717573 [GRCh37]
Chr2:2q12.2
uncertain significance
NM_001253875.2(UXS1):c.1255A>C (p.Lys419Gln) single nucleotide variant Inborn genetic diseases [RCV002778085] Chr2:106094049 [GRCh38]
Chr2:106710505 [GRCh37]
Chr2:2q12.2
uncertain significance
NM_001253875.2(UXS1):c.697C>T (p.Arg233Trp) single nucleotide variant Inborn genetic diseases [RCV002782270] Chr2:106123032 [GRCh38]
Chr2:106739488 [GRCh37]
Chr2:2q12.2
uncertain significance
NM_001253875.2(UXS1):c.1268G>A (p.Arg423His) single nucleotide variant Inborn genetic diseases [RCV002745031] Chr2:106094036 [GRCh38]
Chr2:106710492 [GRCh37]
Chr2:2q12.2
uncertain significance
NM_001253875.2(UXS1):c.1004C>G (p.Thr335Arg) single nucleotide variant Inborn genetic diseases [RCV002802549] Chr2:106098754 [GRCh38]
Chr2:106715210 [GRCh37]
Chr2:2q12.2
uncertain significance
NM_001253875.2(UXS1):c.952A>G (p.Met318Val) single nucleotide variant Inborn genetic diseases [RCV002959685] Chr2:106101090 [GRCh38]
Chr2:106717546 [GRCh37]
Chr2:2q12.2
uncertain significance
NM_001253875.2(UXS1):c.151A>G (p.Asn51Asp) single nucleotide variant Inborn genetic diseases [RCV002792492] Chr2:106164771 [GRCh38]
Chr2:106781227 [GRCh37]
Chr2:2q12.2
uncertain significance
NM_001253875.2(UXS1):c.602G>A (p.Arg201His) single nucleotide variant Inborn genetic diseases [RCV002713879] Chr2:106125655 [GRCh38]
Chr2:106742111 [GRCh37]
Chr2:2q12.2
uncertain significance
NM_001253875.2(UXS1):c.35C>T (p.Ala12Val) single nucleotide variant Inborn genetic diseases [RCV002718842] Chr2:106194207 [GRCh38]
Chr2:106810663 [GRCh37]
Chr2:2q12.2
uncertain significance
NM_001253875.2(UXS1):c.601C>T (p.Arg201Cys) single nucleotide variant Inborn genetic diseases [RCV002677371] Chr2:106125656 [GRCh38]
Chr2:106742112 [GRCh37]
Chr2:2q12.2
uncertain significance
NM_001253875.2(UXS1):c.400G>A (p.Val134Met) single nucleotide variant Inborn genetic diseases [RCV003210340] Chr2:106145262 [GRCh38]
Chr2:106761718 [GRCh37]
Chr2:2q12.2
uncertain significance
NM_001253875.2(UXS1):c.184G>C (p.Glu62Gln) single nucleotide variant Inborn genetic diseases [RCV003218406] Chr2:106164738 [GRCh38]
Chr2:106781194 [GRCh37]
Chr2:2q12.2
uncertain significance
NM_001253875.2(UXS1):c.809G>A (p.Arg270His) single nucleotide variant Inborn genetic diseases [RCV003191932] Chr2:106112716 [GRCh38]
Chr2:106729172 [GRCh37]
Chr2:2q12.2
uncertain significance
NM_001253875.2(UXS1):c.5T>C (p.Val2Ala) single nucleotide variant Inborn genetic diseases [RCV003381281] Chr2:106194237 [GRCh38]
Chr2:106810693 [GRCh37]
Chr2:2q12.2
uncertain significance
NM_001253875.2(UXS1):c.550A>G (p.Asn184Asp) single nucleotide variant Inborn genetic diseases [RCV003371859] Chr2:106129701 [GRCh38]
Chr2:106746157 [GRCh37]
Chr2:2q12.2
uncertain significance
NM_001253875.2(UXS1):c.138G>C (p.Arg46Ser) single nucleotide variant Inborn genetic diseases [RCV003381964] Chr2:106164784 [GRCh38]
Chr2:106781240 [GRCh37]
Chr2:2q12.2
uncertain significance
NM_001253875.2(UXS1):c.607C>G (p.Leu203Val) single nucleotide variant Inborn genetic diseases [RCV003366033] Chr2:106125650 [GRCh38]
Chr2:106742106 [GRCh37]
Chr2:2q12.2
uncertain significance
GRCh37/hg19 2q12.2-21.2(chr2:106755586-134302739)x1 copy number loss not specified [RCV003986380] Chr2:106755586..134302739 [GRCh37]
Chr2:2q12.2-21.2
pathogenic
GRCh37/hg19 2q12.1-12.2(chr2:105674582-106762678)x1 copy number loss not specified [RCV003986360] Chr2:105674582..106762678 [GRCh37]
Chr2:2q12.1-12.2
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2767
Count of miRNA genes:945
Interacting mature miRNAs:1128
Transcripts:ENST00000283148, ENST00000409032, ENST00000409501, ENST00000416298, ENST00000428048, ENST00000436241, ENST00000441952, ENST00000444193, ENST00000457835, ENST00000470053, ENST00000473338, ENST00000474920, ENST00000479621, ENST00000479774, ENST00000483426, ENST00000497604, ENST00000540130
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH36460  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372106,804,626 - 106,804,858UniSTSGRCh37
Build 362106,171,058 - 106,171,290RGDNCBI36
Celera2101,005,083 - 101,005,315RGD
Cytogenetic Map2q12.2UniSTS
HuRef2100,574,425 - 100,574,657UniSTS
GeneMap99-GB4 RH Map2366.75UniSTS
NCBI RH Map2786.5UniSTS
RH70063  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372106,710,129 - 106,710,334UniSTSGRCh37
Build 362106,076,561 - 106,076,766RGDNCBI36
Celera2100,910,555 - 100,910,760RGD
Cytogenetic Map2q12.2UniSTS
HuRef2100,480,107 - 100,480,312UniSTS
GeneMap99-GB4 RH Map2366.65UniSTS
NCBI RH Map2785.4UniSTS
RH26280  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372106,709,873 - 106,710,025UniSTSGRCh37
Build 362106,076,305 - 106,076,457RGDNCBI36
Celera2100,910,299 - 100,910,451RGD
Cytogenetic Map2q12.2UniSTS
HuRef2100,479,851 - 100,480,003UniSTS
SHGC-83592  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372106,756,397 - 106,756,741UniSTSGRCh37
Build 362106,122,829 - 106,123,173RGDNCBI36
Celera2100,956,819 - 100,957,163RGD
Cytogenetic Map2q12.2UniSTS
HuRef2100,526,170 - 100,526,514UniSTS
TNG Radiation Hybrid Map262306.0UniSTS
SHGC-107402  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372106,779,392 - 106,779,730UniSTSGRCh37
Build 362106,145,824 - 106,146,162RGDNCBI36
Celera2100,979,815 - 100,980,153RGD
Cytogenetic Map2q12.2UniSTS
HuRef2100,549,160 - 100,549,498UniSTS
TNG Radiation Hybrid Map262299.0UniSTS
SHGC-142052  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372106,795,478 - 106,795,750UniSTSGRCh37
Build 362106,161,910 - 106,162,182RGDNCBI36
Celera2100,995,928 - 100,996,200RGD
Cytogenetic Map2q12.2UniSTS
HuRef2100,565,272 - 100,565,544UniSTS
TNG Radiation Hybrid Map262253.0UniSTS
SHGC-145369  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372106,801,763 - 106,802,051UniSTSGRCh37
Build 362106,168,195 - 106,168,483RGDNCBI36
Celera2101,002,212 - 101,002,500RGD
Cytogenetic Map2q12.2UniSTS
HuRef2100,571,556 - 100,571,844UniSTS
TNG Radiation Hybrid Map262276.0UniSTS
WIAF-1518  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372106,710,454 - 106,710,580UniSTSGRCh37
Build 362106,076,886 - 106,077,012RGDNCBI36
Celera2100,910,880 - 100,911,006RGD
Cytogenetic Map2q12.2UniSTS
HuRef2100,480,432 - 100,480,558UniSTS
GeneMap99-GB4 RH Map2368.84UniSTS
RH12428  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372106,709,857 - 106,710,028UniSTSGRCh37
Build 362106,076,289 - 106,076,460RGDNCBI36
Celera2100,910,283 - 100,910,454RGD
Cytogenetic Map2q12.2UniSTS
HuRef2100,479,835 - 100,480,006UniSTS
GeneMap99-GB4 RH Map2366.65UniSTS
NCBI RH Map2785.4UniSTS
RH18480  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372106,804,652 - 106,804,831UniSTSGRCh37
Build 362106,171,084 - 106,171,263RGDNCBI36
Celera2101,005,109 - 101,005,288RGD
Cytogenetic Map2q12.2UniSTS
HuRef2100,574,451 - 100,574,630UniSTS
GeneMap99-GB4 RH Map2366.75UniSTS
NCBI RH Map2786.5UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1985 1527 1158 177 1017 110 3124 1048 2523 349 1381 1582 81 882 1885 3
Low 453 1460 568 446 930 355 1232 1149 1209 70 77 31 93 1 322 903 3 1
Below cutoff 1 4 1 4 2 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001253875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001253876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001377504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001377505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001377506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001377507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001377508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001377509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_025076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_045607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_165308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011511902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011511903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017005011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017005014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024453157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047445918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054344035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054344036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054344037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054344038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054344039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054344040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC018878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI217133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK027244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK056022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK057242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK225592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK290668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK304872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL834439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY147934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY358541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC009819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI550591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI825770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM472113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX366726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF242897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CQ783167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CQ783244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB379311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000283148   ⟹   ENSP00000283148
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2106,093,311 - 106,194,301 (-)Ensembl
RefSeq Acc Id: ENST00000409032   ⟹   ENSP00000387096
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2106,093,604 - 106,138,881 (-)Ensembl
RefSeq Acc Id: ENST00000409501   ⟹   ENSP00000387019
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2106,093,508 - 106,194,299 (-)Ensembl
RefSeq Acc Id: ENST00000416298   ⟹   ENSP00000403612
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2106,104,794 - 106,160,625 (-)Ensembl
RefSeq Acc Id: ENST00000436241   ⟹   ENSP00000397049
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2106,123,052 - 106,138,786 (-)Ensembl
RefSeq Acc Id: ENST00000441952   ⟹   ENSP00000416656
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2106,101,047 - 106,194,299 (-)Ensembl
RefSeq Acc Id: ENST00000444193   ⟹   ENSP00000404468
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2106,112,643 - 106,160,584 (-)Ensembl
RefSeq Acc Id: ENST00000457835   ⟹   ENSP00000399316
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2106,122,971 - 106,194,299 (-)Ensembl
RefSeq Acc Id: ENST00000470053
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2106,100,773 - 106,104,824 (-)Ensembl
RefSeq Acc Id: ENST00000473338
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2106,093,604 - 106,097,710 (-)Ensembl
RefSeq Acc Id: ENST00000474920
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2106,158,058 - 106,166,479 (-)Ensembl
RefSeq Acc Id: ENST00000479621
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2106,145,190 - 106,160,397 (-)Ensembl
RefSeq Acc Id: ENST00000479774
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2106,145,190 - 106,160,112 (-)Ensembl
RefSeq Acc Id: ENST00000483426
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2106,145,269 - 106,194,299 (-)Ensembl
RefSeq Acc Id: ENST00000497604
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2106,093,308 - 106,102,952 (-)Ensembl
RefSeq Acc Id: NM_001253875   ⟹   NP_001240804
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382106,093,311 - 106,194,301 (-)NCBI
GRCh372106,709,759 - 106,810,795 (-)NCBI
HuRef2100,479,737 - 100,580,558 (-)NCBI
CHM1_12106,714,842 - 106,815,643 (-)NCBI
T2T-CHM13v2.02106,554,193 - 106,655,255 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001253876   ⟹   NP_001240805
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382106,093,311 - 106,138,881 (-)NCBI
GRCh372106,709,759 - 106,810,795 (-)NCBI
HuRef2100,479,737 - 100,580,558 (-)NCBI
CHM1_12106,714,842 - 106,760,200 (-)NCBI
T2T-CHM13v2.02106,554,193 - 106,599,784 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001377504   ⟹   NP_001364433
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382106,093,311 - 106,194,301 (-)NCBI
T2T-CHM13v2.02106,554,193 - 106,655,255 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001377505   ⟹   NP_001364434
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382106,093,311 - 106,194,301 (-)NCBI
T2T-CHM13v2.02106,554,193 - 106,655,255 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001377506   ⟹   NP_001364435
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382106,093,311 - 106,160,637 (-)NCBI
T2T-CHM13v2.02106,554,193 - 106,621,549 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001377507   ⟹   NP_001364436
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382106,093,311 - 106,194,301 (-)NCBI
T2T-CHM13v2.02106,554,193 - 106,655,255 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001377508   ⟹   NP_001364437
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382106,093,311 - 106,194,301 (-)NCBI
T2T-CHM13v2.02106,554,193 - 106,655,255 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001377509   ⟹   NP_001364438
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382106,093,311 - 106,160,637 (-)NCBI
T2T-CHM13v2.02106,554,193 - 106,621,549 (-)NCBI
Sequence:
RefSeq Acc Id: NM_025076   ⟹   NP_079352
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382106,093,311 - 106,194,301 (-)NCBI
GRCh372106,709,759 - 106,810,795 (-)RGD
Build 362106,076,191 - 106,177,227 (-)NCBI Archive
Celera2100,910,185 - 101,011,254 (-)RGD
HuRef2100,479,737 - 100,580,558 (-)ENTREZGENE
CHM1_12106,714,842 - 106,815,643 (-)NCBI
T2T-CHM13v2.02106,554,193 - 106,655,255 (-)NCBI
Sequence:
RefSeq Acc Id: NR_045607
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382106,093,311 - 106,194,301 (-)NCBI
GRCh372106,709,759 - 106,810,795 (-)NCBI
HuRef2100,479,737 - 100,580,558 (-)NCBI
CHM1_12106,714,842 - 106,815,643 (-)NCBI
T2T-CHM13v2.02106,554,193 - 106,655,255 (-)NCBI
Sequence:
RefSeq Acc Id: NR_165308
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382106,093,311 - 106,194,301 (-)NCBI
T2T-CHM13v2.02106,554,193 - 106,655,255 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011511902   ⟹   XP_011510204
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382106,093,311 - 106,194,301 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011511903   ⟹   XP_011510205
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382106,093,311 - 106,194,301 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024453157   ⟹   XP_024308925
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382106,093,311 - 106,158,076 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047445918   ⟹   XP_047301874
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382106,093,311 - 106,193,996 (-)NCBI
RefSeq Acc Id: XM_054344035   ⟹   XP_054200010
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02106,554,193 - 106,655,253 (-)NCBI
RefSeq Acc Id: XM_054344036   ⟹   XP_054200011
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02106,554,193 - 106,655,253 (-)NCBI
RefSeq Acc Id: XM_054344037   ⟹   XP_054200012
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02106,554,193 - 106,624,606 (-)NCBI
RefSeq Acc Id: XM_054344038   ⟹   XP_054200013
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02106,554,193 - 106,625,619 (-)NCBI
RefSeq Acc Id: XM_054344039   ⟹   XP_054200014
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02106,554,193 - 106,654,950 (-)NCBI
RefSeq Acc Id: XM_054344040   ⟹   XP_054200015
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02106,554,193 - 106,618,988 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001240804 (Get FASTA)   NCBI Sequence Viewer  
  NP_001240805 (Get FASTA)   NCBI Sequence Viewer  
  NP_001364433 (Get FASTA)   NCBI Sequence Viewer  
  NP_001364434 (Get FASTA)   NCBI Sequence Viewer  
  NP_001364435 (Get FASTA)   NCBI Sequence Viewer  
  NP_001364436 (Get FASTA)   NCBI Sequence Viewer  
  NP_001364437 (Get FASTA)   NCBI Sequence Viewer  
  NP_001364438 (Get FASTA)   NCBI Sequence Viewer  
  NP_079352 (Get FASTA)   NCBI Sequence Viewer  
  XP_011510204 (Get FASTA)   NCBI Sequence Viewer  
  XP_011510205 (Get FASTA)   NCBI Sequence Viewer  
  XP_024308925 (Get FASTA)   NCBI Sequence Viewer  
  XP_047301874 (Get FASTA)   NCBI Sequence Viewer  
  XP_054200010 (Get FASTA)   NCBI Sequence Viewer  
  XP_054200011 (Get FASTA)   NCBI Sequence Viewer  
  XP_054200012 (Get FASTA)   NCBI Sequence Viewer  
  XP_054200013 (Get FASTA)   NCBI Sequence Viewer  
  XP_054200014 (Get FASTA)   NCBI Sequence Viewer  
  XP_054200015 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH09819 (Get FASTA)   NCBI Sequence Viewer  
  AAN39844 (Get FASTA)   NCBI Sequence Viewer  
  AAQ88905 (Get FASTA)   NCBI Sequence Viewer  
  AAY15085 (Get FASTA)   NCBI Sequence Viewer  
  BAB15705 (Get FASTA)   NCBI Sequence Viewer  
  BAC11415 (Get FASTA)   NCBI Sequence Viewer  
  BAC11448 (Get FASTA)   NCBI Sequence Viewer  
  BAF83357 (Get FASTA)   NCBI Sequence Viewer  
  BAG53673 (Get FASTA)   NCBI Sequence Viewer  
  BAG65609 (Get FASTA)   NCBI Sequence Viewer  
  CAD39099 (Get FASTA)   NCBI Sequence Viewer  
  CAF86373 (Get FASTA)   NCBI Sequence Viewer  
  CAF86438 (Get FASTA)   NCBI Sequence Viewer  
  EAX01747 (Get FASTA)   NCBI Sequence Viewer  
  EAX01748 (Get FASTA)   NCBI Sequence Viewer  
  EAX01749 (Get FASTA)   NCBI Sequence Viewer  
  EAX01750 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000283148
  ENSP00000283148.7
  ENSP00000387019
  ENSP00000387019.3
  ENSP00000387096
  ENSP00000387096.1
  ENSP00000397049.1
  ENSP00000399316.1
  ENSP00000403612.1
  ENSP00000404468.1
  ENSP00000416656.1
  ENSP00000502305.1
  ENSP00000502335.1
  ENSP00000502540.1
GenBank Protein Q8NBZ7 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_079352   ⟸   NM_025076
- Peptide Label: isoform 2
- UniProtKB: Q8NBX3 (UniProtKB/Swiss-Prot),   Q9H5C2 (UniProtKB/Swiss-Prot),   Q8NBZ7 (UniProtKB/Swiss-Prot),   A8K3Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001240804   ⟸   NM_001253875
- Peptide Label: isoform 1
- UniProtKB: A8K3Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001240805   ⟸   NM_001253876
- Peptide Label: isoform 3
- UniProtKB: Q8NBZ7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011510205   ⟸   XM_011511903
- Peptide Label: isoform X2
- UniProtKB: A8K3Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011510204   ⟸   XM_011511902
- Peptide Label: isoform X1
- UniProtKB: A8K3Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024308925   ⟸   XM_024453157
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: NP_001364434   ⟸   NM_001377505
- Peptide Label: isoform 5
- UniProtKB: A8K3Q3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001364437   ⟸   NM_001377508
- Peptide Label: isoform 8
- UniProtKB: A8K3Q3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001364433   ⟸   NM_001377504
- Peptide Label: isoform 4
- UniProtKB: A8K3Q3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001364436   ⟸   NM_001377507
- Peptide Label: isoform 7
- UniProtKB: A8K3Q3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001364435   ⟸   NM_001377506
- Peptide Label: isoform 6
- UniProtKB: A8K3Q3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001364438   ⟸   NM_001377509
- Peptide Label: isoform 9
RefSeq Acc Id: ENSP00000283148   ⟸   ENST00000283148
RefSeq Acc Id: ENSP00000416656   ⟸   ENST00000441952
RefSeq Acc Id: ENSP00000403612   ⟸   ENST00000416298
RefSeq Acc Id: ENSP00000399316   ⟸   ENST00000457835
RefSeq Acc Id: ENSP00000404468   ⟸   ENST00000444193
RefSeq Acc Id: ENSP00000387096   ⟸   ENST00000409032
RefSeq Acc Id: ENSP00000387019   ⟸   ENST00000409501
RefSeq Acc Id: ENSP00000397049   ⟸   ENST00000436241
RefSeq Acc Id: XP_047301874   ⟸   XM_047445918
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054200011   ⟸   XM_054344036
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054200010   ⟸   XM_054344035
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054200014   ⟸   XM_054344039
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054200013   ⟸   XM_054344038
- Peptide Label: isoform X6
- UniProtKB: B3KV61 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054200012   ⟸   XM_054344037
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054200015   ⟸   XM_054344040
- Peptide Label: isoform X4
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8NBZ7-F1-model_v2 AlphaFold Q8NBZ7 1-420 view protein structure

Promoters
RGD ID:6798429
Promoter ID:HG_KWN:34285
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell
Transcripts:OTTHUMT00000329789
Position:
Human AssemblyChrPosition (strand)Source
Build 362106,087,106 - 106,087,606 (-)MPROMDB
RGD ID:6798430
Promoter ID:HG_KWN:34286
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour
Transcripts:OTTHUMT00000329788,   UC002TDL.1
Position:
Human AssemblyChrPosition (strand)Source
Build 362106,120,919 - 106,121,419 (-)MPROMDB
RGD ID:6798425
Promoter ID:HG_KWN:34287
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000329783,   OTTHUMT00000329784,   OTTHUMT00000329785,   OTTHUMT00000329786
Position:
Human AssemblyChrPosition (strand)Source
Build 362106,143,016 - 106,143,957 (-)MPROMDB
RGD ID:6798426
Promoter ID:HG_KWN:34290
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000409501,   NM_025076,   OTTHUMT00000329781,   OTTHUMT00000329782,   OTTHUMT00000329787,   UC002TDO.1
Position:
Human AssemblyChrPosition (strand)Source
Build 362106,177,046 - 106,177,552 (-)MPROMDB
RGD ID:6861252
Promoter ID:EPDNEW_H3791
Type:initiation region
Name:UXS1_1
Description:UDP-glucuronate decarboxylase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382106,194,299 - 106,194,359EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:17729 AgrOrtholog
COSMIC UXS1 COSMIC
Ensembl Genes ENSG00000115652 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000283148 ENTREZGENE
  ENST00000283148.12 UniProtKB/Swiss-Prot
  ENST00000409032 ENTREZGENE
  ENST00000409032.5 UniProtKB/Swiss-Prot
  ENST00000409501 ENTREZGENE
  ENST00000409501.7 UniProtKB/Swiss-Prot
  ENST00000416298.5 UniProtKB/TrEMBL
  ENST00000436241.1 UniProtKB/TrEMBL
  ENST00000441952.5 UniProtKB/TrEMBL
  ENST00000444193.5 UniProtKB/TrEMBL
  ENST00000457835.5 UniProtKB/TrEMBL
  ENST00000479621.5 UniProtKB/TrEMBL
  ENST00000479774.5 UniProtKB/TrEMBL
  ENST00000483426.5 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UDP-galactose 4-epimerase, domain 1 UniProtKB/TrEMBL
GTEx ENSG00000115652 GTEx
HGNC ID HGNC:17729 ENTREZGENE
Human Proteome Map UXS1 Human Proteome Map
InterPro Epimerase_deHydtase_N UniProtKB/TrEMBL
  NAD(P)-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UXS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UXS1_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:80146 UniProtKB/Swiss-Prot
NCBI Gene 80146 ENTREZGENE
OMIM 609749 OMIM
PANTHER PTHR43078 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UDP-GLUCURONIC ACID DECARBOXYLASE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Epimerase UniProtKB/TrEMBL
  GDP_Man_Dehyd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UXS1_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA38465 PharmGKB
Superfamily-SCOP SSF51735 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A6Q8PGM4_HUMAN UniProtKB/TrEMBL
  A0A6Q8PGN2_HUMAN UniProtKB/TrEMBL
  A0A6Q8PH60_HUMAN UniProtKB/TrEMBL
  A8K3Q3 ENTREZGENE, UniProtKB/TrEMBL
  B3KV61 ENTREZGENE, UniProtKB/TrEMBL
  C9J3T9_HUMAN UniProtKB/TrEMBL
  C9JCB7_HUMAN UniProtKB/TrEMBL
  C9JE50_HUMAN UniProtKB/TrEMBL
  C9JFU6_HUMAN UniProtKB/TrEMBL
  C9JW33_HUMAN UniProtKB/TrEMBL
  Q8NBX3 ENTREZGENE
  Q8NBZ7 ENTREZGENE
  Q9H5C2 ENTREZGENE
  UXS1_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary Q8NBX3 UniProtKB/Swiss-Prot
  Q9H5C2 UniProtKB/Swiss-Prot