UXS1 (UDP-glucuronate decarboxylase 1) - Rat Genome Database

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Gene: UXS1 (UDP-glucuronate decarboxylase 1) Pan paniscus
Analyze
Symbol: UXS1
Name: UDP-glucuronate decarboxylase 1
RGD ID: 11671395
Description: ENCODES a protein that exhibits UDP-glucuronate decarboxylase activity (ortholog); INVOLVED IN D-xylose metabolic process (inferred); UDP-D-xylose biosynthetic process (inferred); PARTICIPATES IN galactokinase deficiency pathway; GALE deficiency pathway; nucleotide sugar metabolic pathway; ASSOCIATED WITH Craniofacial Abnormalities (ortholog); genetic disease (ortholog); FOUND IN catalytic complex (inferred); cytoplasm (inferred); Golgi apparatus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UDP-glucuronic acid decarboxylase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21221,539,772 - 21,658,545 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A21,542,537 - 21,660,161 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A95,652,107 - 95,770,022 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A107,168,081 - 107,234,626 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A107,168,309 - 107,234,632 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
UXS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21221,539,772 - 21,658,545 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A21,542,537 - 21,660,161 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A95,652,107 - 95,770,022 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A107,168,081 - 107,234,626 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A107,168,309 - 107,234,632 (-)Ensemblpanpan1.1panPan2
UXS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382106,093,311 - 106,194,301 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2106,093,308 - 106,194,301 (-)EnsemblGRCh38hg38GRCh38
GRCh372106,709,767 - 106,810,757 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362106,076,191 - 106,177,227 (-)NCBINCBI36Build 36hg18NCBI36
Build 342106,168,277 - 106,269,313NCBI
Celera2100,910,185 - 101,011,254 (-)NCBICelera
Cytogenetic Map2q12.2NCBI
HuRef2100,479,737 - 100,580,558 (-)NCBIHuRef
CHM1_12106,714,842 - 106,815,643 (-)NCBICHM1_1
T2T-CHM13v2.02106,554,193 - 106,655,255 (-)NCBIT2T-CHM13v2.0
Uxs1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39143,786,121 - 43,866,999 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl143,786,126 - 43,866,960 (-)EnsemblGRCm39 Ensembl
GRCm38143,746,961 - 43,827,839 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl143,746,966 - 43,827,800 (-)EnsemblGRCm38mm10GRCm38
MGSCv37143,807,076 - 43,884,553 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36143,693,833 - 43,772,294 (-)NCBIMGSCv36mm8
Celera144,100,573 - 44,177,690 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map123.46NCBI
Uxs1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89740,929 - 818,310 (+)NCBIGRCr8
mRatBN7.29653,740 - 731,121 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9653,659 - 756,334 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx91,101,032 - 1,178,186 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.096,448,086 - 6,525,417 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.095,338,604 - 5,415,805 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0911,165,006 - 11,240,329 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl911,164,715 - 11,339,790 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0910,150,134 - 10,226,955 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera97,775,435 - 7,852,399 (-)NCBICelera
Cytogenetic Map9q11NCBI
Uxs1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547010,659,520 - 10,706,269 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547010,661,210 - 10,706,504 (-)NCBIChiLan1.0ChiLan1.0
UXS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11037,342,675 - 37,407,725 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1037,342,746 - 37,407,252 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1037,238,647 - 37,332,207 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01038,164,639 - 38,257,518 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1038,164,685 - 38,257,471 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11037,896,777 - 37,989,649 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01038,173,540 - 38,266,403 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01038,367,280 - 38,460,904 (+)NCBIUU_Cfam_GSD_1.0
Uxs1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629292,409,779 - 92,504,443 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367294,916 - 99,818 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367295,056 - 99,755 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UXS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl348,870,948 - 48,940,721 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1348,871,036 - 48,940,736 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2351,082,501 - 51,149,409 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UXS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1149,692,449 - 9,808,837 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl149,713,123 - 9,808,764 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041177,415,766 - 177,532,870 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Uxs1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247499,969,492 - 10,021,913 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247499,969,500 - 10,021,931 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000031008   ⟹   ENSPPAP00000008372
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A107,168,309 - 107,234,632 (-)Ensembl
RefSeq Acc Id: XM_034953600   ⟹   XP_034809491
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21221,539,774 - 21,658,545 (+)NCBI
NHGRI_mPanPan12A21,542,537 - 21,660,161 (+)NCBI
Mhudiblu_PPA_v02A95,652,107 - 95,770,022 (+)NCBI
RefSeq Acc Id: XM_034953601   ⟹   XP_034809492
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21221,539,772 - 21,658,545 (+)NCBI
NHGRI_mPanPan12A21,542,537 - 21,660,161 (+)NCBI
Mhudiblu_PPA_v02A95,652,153 - 95,770,022 (+)NCBI
RefSeq Acc Id: XM_034953602   ⟹   XP_034809493
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21221,539,772 - 21,635,126 (+)NCBI
NHGRI_mPanPan12A21,542,543 - 21,637,891 (+)NCBI
Mhudiblu_PPA_v02A95,652,153 - 95,747,443 (+)NCBI
RefSeq Acc Id: XM_034953604   ⟹   XP_034809495
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21221,539,772 - 21,635,126 (+)NCBI
NHGRI_mPanPan12A21,542,541 - 21,637,891 (+)NCBI
Mhudiblu_PPA_v02A95,652,153 - 95,747,440 (+)NCBI
RefSeq Acc Id: XM_034953605   ⟹   XP_034809496
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21221,575,228 - 21,658,545 (+)NCBI
NHGRI_mPanPan12A21,577,970 - 21,660,161 (+)NCBI
Mhudiblu_PPA_v02A95,687,538 - 95,770,022 (+)NCBI
RefSeq Acc Id: XM_063594552   ⟹   XP_063450622
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21221,574,225 - 21,658,545 (+)NCBI
RefSeq Acc Id: XM_063594553   ⟹   XP_063450623
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21221,573,185 - 21,635,126 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_034809491   ⟸   XM_034953600
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034809492   ⟸   XM_034953601
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034809493   ⟸   XM_034953602
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034809495   ⟸   XM_034953604
- Peptide Label: isoform X5
RefSeq Acc Id: XP_034809496   ⟸   XM_034953605
- Peptide Label: isoform X6
RefSeq Acc Id: ENSPPAP00000008372   ⟸   ENSPPAT00000031008
RefSeq Acc Id: XP_063450623   ⟸   XM_063594553
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063450622   ⟸   XM_063594552
- Peptide Label: isoform X4
Protein Domains
NAD(P)-binding   UDP-glucuronate decarboxylase N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027425 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000031008.1 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
  UDP-galactose 4-epimerase, domain 1 UniProtKB/TrEMBL
InterPro NAD(P)-bd_dom UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  UXS UniProtKB/TrEMBL
  UXS1_N UniProtKB/TrEMBL
NCBI Gene UXS1 ENTREZGENE
PANTHER PTHR43078 UniProtKB/TrEMBL
  UDP-GLUCURONIC ACID DECARBOXYLASE 1 UniProtKB/TrEMBL
Pfam GDP_Man_Dehyd UniProtKB/TrEMBL
  UXS1_N UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt A0A2R8ZX65_PANPA UniProtKB/TrEMBL