Uxs1 (UDP-glucuronate decarboxylase 1) - Rat Genome Database

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Gene: Uxs1 (UDP-glucuronate decarboxylase 1) Ictidomys tridecemlineatus
Analyze
Symbol: Uxs1
Name: UDP-glucuronate decarboxylase 1
RGD ID: 12517087
Description: ENCODES a protein that exhibits UDP-glucuronate decarboxylase activity (ortholog); INVOLVED IN D-xylose metabolic process (inferred); UDP-D-xylose biosynthetic process (inferred); PARTICIPATES IN galactokinase deficiency pathway; GALE deficiency pathway; nucleotide sugar metabolic pathway; ASSOCIATED WITH Craniofacial Abnormalities (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UDP-glucuronic acid decarboxylase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629292,409,779 - 92,504,443 (-)NCBI
SpeTri2.0NW_0049367295,056 - 99,755 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Uxs1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629292,409,779 - 92,504,443 (-)NCBI
SpeTri2.0NW_0049367295,056 - 99,755 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UXS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382106,093,311 - 106,194,301 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2106,093,308 - 106,194,301 (-)EnsemblGRCh38hg38GRCh38
GRCh372106,709,767 - 106,810,757 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362106,076,191 - 106,177,227 (-)NCBINCBI36hg18NCBI36
Build 342106,168,277 - 106,269,313NCBI
Celera2100,910,185 - 101,011,254 (-)NCBI
Cytogenetic Map2q12.2NCBI
HuRef2100,479,737 - 100,580,558 (-)NCBIHuRef
CHM1_12106,714,842 - 106,815,643 (-)NCBICHM1_1
T2T-CHM13v2.02106,554,193 - 106,655,255 (-)NCBI
Uxs1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39143,786,121 - 43,866,999 (-)NCBIGRCm39mm39
GRCm39 Ensembl143,786,126 - 43,866,960 (-)Ensembl
GRCm38143,746,961 - 43,827,839 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl143,746,966 - 43,827,800 (-)EnsemblGRCm38mm10GRCm38
MGSCv37143,807,076 - 43,884,553 (-)NCBIGRCm37mm9NCBIm37
MGSCv36143,693,833 - 43,772,294 (-)NCBImm8
Celera144,100,573 - 44,177,690 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
Uxs1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.29653,740 - 731,121 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl9653,659 - 756,334 (+)Ensembl
Rnor_6.0911,165,006 - 11,240,329 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl911,164,715 - 11,339,790 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0910,150,134 - 10,226,955 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera97,775,435 - 7,852,399 (-)NCBICelera
Cytogenetic Map9q12NCBI
Uxs1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547010,659,520 - 10,706,269 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547010,661,210 - 10,706,504 (-)NCBIChiLan1.0ChiLan1.0
UXS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A107,168,081 - 107,234,626 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A107,168,309 - 107,234,632 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A95,652,107 - 95,770,022 (+)NCBIMhudiblu_PPA_v0panPan3
UXS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11037,342,675 - 37,407,725 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1037,342,746 - 37,407,252 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1037,238,647 - 37,332,207 (+)NCBI
ROS_Cfam_1.01038,164,639 - 38,257,518 (+)NCBI
ROS_Cfam_1.0 Ensembl1038,164,685 - 38,257,471 (+)Ensembl
UMICH_Zoey_3.11037,896,777 - 37,989,649 (+)NCBI
UNSW_CanFamBas_1.01038,173,540 - 38,266,403 (+)NCBI
UU_Cfam_GSD_1.01038,367,280 - 38,460,904 (+)NCBI
UXS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl348,870,948 - 48,940,721 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1348,871,036 - 48,940,736 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2351,082,501 - 51,149,409 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UXS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1149,692,449 - 9,808,837 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl149,713,123 - 9,808,764 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041177,415,766 - 177,532,870 (-)NCBIVero_WHO_p1.0
Uxs1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247499,969,492 - 10,021,913 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247499,969,500 - 10,021,931 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005339084   ⟹   XP_005339141
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629292,409,779 - 92,504,443 (-)NCBI
SpeTri2.0NW_0049367295,056 - 99,755 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040270890   ⟹   XP_040126824
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629292,409,785 - 92,476,548 (-)NCBI
RefSeq Acc Id: XM_040270891   ⟹   XP_040126825
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629292,409,785 - 92,504,419 (-)NCBI
RefSeq Acc Id: XM_040270892   ⟹   XP_040126826
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629292,409,779 - 92,473,712 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005339141 (Get FASTA)   NCBI Sequence Viewer  
  XP_040126824 (Get FASTA)   NCBI Sequence Viewer  
  XP_040126825 (Get FASTA)   NCBI Sequence Viewer  
  XP_040126826 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005339141   ⟸   XM_005339084
- Peptide Label: isoform X1
- UniProtKB: I3MQ56 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040126826   ⟸   XM_040270892
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040126825   ⟸   XM_040270891
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040126824   ⟸   XM_040270890
- Peptide Label: isoform X2
Protein Domains
NAD(P)-bd_dom   UXS1_N


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015675 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000014036 ENTREZGENE
  ENSSTOP00000014036.3 UniProtKB/TrEMBL
  ENSSTOP00000026816.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015681.3 UniProtKB/TrEMBL
  ENSSTOT00000032886.1 UniProtKB/TrEMBL
InterPro NAD(P)-bd_dom UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  UXS UniProtKB/TrEMBL
  UXS1_N UniProtKB/TrEMBL
NCBI Gene Uxs1 ENTREZGENE
PANTHER PTHR43078 UniProtKB/TrEMBL
Pfam GDP_Man_Dehyd UniProtKB/TrEMBL
  UXS1_N UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt A0A287CZX0_ICTTR UniProtKB/TrEMBL
  I3MQ56 ENTREZGENE, UniProtKB/TrEMBL