Bicd2 (BICD cargo adaptor 2) - Rat Genome Database

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Gene: Bicd2 (BICD cargo adaptor 2) Rattus norvegicus
Analyze
Symbol: Bicd2
Name: BICD cargo adaptor 2
RGD ID: 735093
Description: Predicted to enable several functions, including dynactin binding activity; dynein complex binding activity; and dynein light intermediate chain binding activity. Predicted to be involved in several processes, including centrosome localization; microtubule anchoring at microtubule organizing center; and minus-end-directed organelle transport along microtubule. Predicted to be located in several cellular components, including annulate lamellae; centrosome; and nuclear envelope. Predicted to be part of nuclear pore. Predicted to be active in Golgi apparatus and cytosol. Human ortholog(s) of this gene implicated in spinal muscular atrophy with lower extremity predominant 2A and spinal muscular atrophy with lower extremity predominant 2B. Orthologous to human BICD2 (BICD cargo adaptor 2); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: bicaudal D homolog 2; bicaudal D homolog 2 (Drosophila); bicaudal D protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21715,259,773 - 15,304,889 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1715,259,773 - 15,304,889 (-)Ensembl
Rnor_6.01715,673,649 - 15,718,035 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1715,673,650 - 15,718,035 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01717,731,018 - 17,775,611 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41721,214,977 - 21,260,729 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11721,214,995 - 21,260,709 (-)NCBI
Celera1714,990,557 - 15,035,504 (-)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Mammalian Golgi-associated Bicaudal-D2 functions in the dynein-dynactin pathway by interacting with these complexes. Hoogenraad CC, etal., EMBO J 2001 Aug 1;20(15):4041-54.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12447383   PMID:12477932   PMID:17139249   PMID:19825938   PMID:20386726   PMID:22956769   PMID:23664116   PMID:24614806   PMID:25272277   PMID:25962623  


Genomics

Comparative Map Data
Bicd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21715,259,773 - 15,304,889 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1715,259,773 - 15,304,889 (-)Ensembl
Rnor_6.01715,673,649 - 15,718,035 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1715,673,650 - 15,718,035 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01717,731,018 - 17,775,611 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41721,214,977 - 21,260,729 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11721,214,995 - 21,260,709 (-)NCBI
Celera1714,990,557 - 15,035,504 (-)NCBICelera
Cytogenetic Map17p14NCBI
BICD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38992,711,363 - 92,764,833 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl992,711,363 - 92,764,833 (-)EnsemblGRCh38hg38GRCh38
GRCh37995,473,645 - 95,527,115 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36994,513,466 - 94,566,904 (-)NCBINCBI36hg18NCBI36
Build 34992,553,199 - 92,606,638NCBI
Celera965,915,700 - 65,969,136 (-)NCBI
Cytogenetic Map9q22.31NCBI
HuRef965,151,961 - 65,205,073 (-)NCBIHuRef
CHM1_1995,620,081 - 95,673,514 (-)NCBICHM1_1
T2T-CHM13v2.09104,877,924 - 104,931,386 (-)NCBI
Bicd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391349,495,025 - 49,540,502 (+)NCBIGRCm39mm39
GRCm39 Ensembl1349,495,061 - 49,540,502 (+)Ensembl
GRCm381349,341,549 - 49,387,026 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1349,341,585 - 49,387,026 (+)EnsemblGRCm38mm10GRCm38
MGSCv371349,436,918 - 49,482,394 (+)NCBIGRCm37mm9NCBIm37
MGSCv361349,353,486 - 49,398,962 (+)NCBImm8
Celera1350,431,086 - 50,476,523 (+)NCBICelera
Cytogenetic Map13A5NCBI
Bicd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555155,061,005 - 5,103,179 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555155,060,176 - 5,105,298 (+)NCBIChiLan1.0ChiLan1.0
BICD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1991,905,982 - 91,959,186 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl991,909,771 - 91,959,131 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0963,834,515 - 63,890,904 (-)NCBIMhudiblu_PPA_v0panPan3
BICD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1198,697,050 - 98,736,296 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl198,697,075 - 98,734,240 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha199,091,059 - 99,130,138 (+)NCBI
ROS_Cfam_1.0199,313,974 - 99,353,079 (+)NCBI
ROS_Cfam_1.0 Ensembl199,313,980 - 99,353,078 (+)Ensembl
UMICH_Zoey_3.1198,927,112 - 98,966,197 (+)NCBI
UNSW_CanFamBas_1.0198,662,724 - 98,701,758 (+)NCBI
UU_Cfam_GSD_1.0199,418,306 - 99,457,372 (+)NCBI
Bicd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049448,071,268 - 8,119,191 (-)NCBI
SpeTri2.0NW_0049364872,287,736 - 2,335,674 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BICD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl342,393,277 - 42,456,782 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1342,393,270 - 42,456,821 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2343,627,163 - 43,647,661 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BICD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112103,232,602 - 103,281,317 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl12103,232,327 - 103,281,288 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603891,504,437 - 91,553,420 (-)NCBIVero_WHO_p1.0
Bicd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248683,598,688 - 3,650,731 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248683,598,523 - 3,649,641 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D17Rat70  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21715,281,866 - 15,282,062 (+)MAPPERmRatBN7.2
Rnor_6.01715,695,017 - 15,695,212NCBIRnor6.0
Rnor_5.01717,752,672 - 17,752,867UniSTSRnor5.0
RGSC_v3.41721,237,691 - 21,237,887RGDRGSC3.4
RGSC_v3.41721,237,692 - 21,237,887UniSTSRGSC3.4
RGSC_v3.11721,237,692 - 21,237,887RGD
Celera1715,012,473 - 15,012,680UniSTS
RH 3.4 Map17178.02RGD
RH 3.4 Map17178.02UniSTS
SHRSP x BN Map1711.64UniSTS
SHRSP x BN Map1711.64RGD
FHH x ACI Map1711.2699RGD
Cytogenetic Map17p14UniSTS
RH91165  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21715,259,818 - 15,259,997 (+)MAPPERmRatBN7.2
Rnor_6.01715,673,695 - 15,673,873NCBIRnor6.0
Rnor_5.01717,731,064 - 17,731,242UniSTSRnor5.0
RGSC_v3.41721,215,023 - 21,215,201UniSTSRGSC3.4
Celera1714,990,603 - 14,990,781UniSTS
Cytogenetic Map17p14UniSTS
RH131216  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21715,305,256 - 15,305,473 (+)MAPPERmRatBN7.2
Rnor_6.01715,718,403 - 15,718,619NCBIRnor6.0
Rnor_5.01717,775,979 - 17,776,195UniSTSRnor5.0
RGSC_v3.41721,261,097 - 21,261,313UniSTSRGSC3.4
Celera1715,035,872 - 15,036,088UniSTS
RH 3.4 Map17160.8UniSTS
Cytogenetic Map17p14UniSTS
AA891724  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21715,259,949 - 15,260,179 (+)MAPPERmRatBN7.2
Rnor_6.01715,673,826 - 15,674,055NCBIRnor6.0
Rnor_5.01717,731,195 - 17,731,424UniSTSRnor5.0
RGSC_v3.41721,215,154 - 21,215,383UniSTSRGSC3.4
Celera1714,990,734 - 14,990,963UniSTS
RH 3.4 Map17176.2UniSTS
Cytogenetic Map17p14UniSTS
G06234  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21715,259,794 - 15,260,055 (+)MAPPERmRatBN7.2
Rnor_6.01715,673,671 - 15,673,931NCBIRnor6.0
Rnor_5.01717,731,040 - 17,731,300UniSTSRnor5.0
RGSC_v3.41721,214,999 - 21,215,259UniSTSRGSC3.4
Celera1714,990,579 - 14,990,839UniSTS
Cytogenetic Map17p14UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122871563Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131701463Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17211514921881669Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
631499Stl1Serum triglyceride level QTL 13.6blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)17327139827389946Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)17429913021293263Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17429913021293263Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17429913035837242Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17435448727028127Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17435448727028127Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
1581553Pur14Proteinuria QTL 145.30.0001total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)17797996816317111Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
1582199Insul5Insulin level QTL 53.40.0119blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)17920136523653323Rat
1582208Kidm32Kidney mass QTL 323.90.0018kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17920136523653323Rat
1582224Epfw4Epididymal fat weight QTL 43.50.0058epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)17920136523653323Rat
1582225Bw67Body weight QTL 676.20.0001body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582226Bw64Body weight QTL 644.20.0017body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582241Bw70Body weight QTL 704.60.0003body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582245Bw73Body weight QTL 734.60.0004body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582258Bw76Body weight QTL 764.60.0005body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17999128640540197Rat
1549900Iddm20Insulin dependent diabetes mellitus QTL 203.7pancreas integrity trait (VT:0010560)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)171398677321975515Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:380
Count of miRNA genes:231
Interacting mature miRNAs:295
Transcripts:ENSRNOT00000048653
Prediction methods:Miranda, Pita, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 43 24 8 19 8 8 10 74 35 41 11 8
Low 1 33 33 33 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000048653   ⟹   ENSRNOP00000047890
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1715,259,775 - 15,304,889 (-)Ensembl
Rnor_6.0 Ensembl1715,673,650 - 15,718,015 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000090647   ⟹   ENSRNOP00000069365
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1715,259,773 - 15,304,889 (-)Ensembl
Rnor_6.0 Ensembl1715,673,650 - 15,718,035 (-)Ensembl
RefSeq Acc Id: NM_001033674   ⟹   NP_001028846
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21715,259,773 - 15,304,889 (-)NCBI
Rnor_6.01715,673,649 - 15,718,035 (-)NCBI
Rnor_5.01717,731,018 - 17,775,611 (-)NCBI
RGSC_v3.41721,214,977 - 21,260,729 (-)RGD
Celera1714,990,557 - 15,035,504 (-)RGD
Sequence:
RefSeq Acc Id: NM_198765   ⟹   NP_942060
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21715,259,773 - 15,304,889 (-)NCBI
Rnor_6.01715,673,649 - 15,718,035 (-)NCBI
Rnor_5.01717,731,018 - 17,775,611 (-)NCBI
RGSC_v3.41721,214,977 - 21,260,729 (-)RGD
Celera1714,990,557 - 15,035,504 (-)RGD
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001028846   ⟸   NM_001033674
- Peptide Label: isoform 1
- UniProtKB: Q496Z1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_942060   ⟸   NM_198765
- Peptide Label: isoform 2
- UniProtKB: Q712J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000047890   ⟸   ENSRNOT00000048653
RefSeq Acc Id: ENSRNOP00000069365   ⟸   ENSRNOT00000090647

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q496Z1-F1-model_v2 AlphaFold Q496Z1 1-851 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700354
Promoter ID:EPDNEW_R10877
Type:initiation region
Name:Bicd2_1
Description:BICD cargo adaptor 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01715,718,027 - 15,718,087EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735093 AgrOrtholog
BioCyc Gene G2FUF-9993 BioCyc
Ensembl Genes ENSRNOG00000016031 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000047890.5 UniProtKB/TrEMBL
  ENSRNOP00000069365 ENTREZGENE
  ENSRNOP00000069365.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000048653.5 UniProtKB/TrEMBL
  ENSRNOT00000090647 ENTREZGENE
  ENSRNOT00000090647.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7935996 IMAGE-MGC_LOAD
InterPro Bicaudal-D_microtubule-assoc UniProtKB/TrEMBL
KEGG Report rno:306809 UniProtKB/TrEMBL
MGC_CLONE MGC:124540 IMAGE-MGC_LOAD
NCBI Gene 306809 ENTREZGENE
PANTHER PTHR31233 UniProtKB/TrEMBL
Pfam BicD UniProtKB/TrEMBL
PhenoGen Bicd2 PhenoGen
UniProt A0A8J8Y893_RAT UniProtKB/TrEMBL
  Q496Z1 ENTREZGENE, UniProtKB/TrEMBL
  Q712J2_RAT UniProtKB/TrEMBL
  Q712J3 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F7FC29 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Bicd2  BICD cargo adaptor 2  Bicd2  bicaudal D homolog 2 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 Bicd2  bicaudal D homolog 2 (Drosophila)      Symbol updated 1299863 APPROVED
2004-09-10 BicD2  bicaudal D homolog 2 (Drosophila)    bicaudal D protein  Name updated 1299863 APPROVED