Bicd2 (BICD cargo adaptor 2) - Rat Genome Database

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Gene: Bicd2 (BICD cargo adaptor 2) Heterocephalus glaber
Analyze
Symbol: Bicd2
Name: BICD cargo adaptor 2
RGD ID: 18931346
Description: ENCODES a protein that exhibits small GTPase binding (ortholog); INVOLVED IN centrosome localization (ortholog); microtubule-based movement (ortholog); minus-end-directed organelle transport along microtubule (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant distal hereditary motor neuronopathy (ortholog); autosomal dominant distal hereditary motor neuronopathy 12 (ortholog); FOUND IN annulate lamellae (ortholog); centrosome (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein bicaudal D homolog 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248683,598,688 - 3,650,731 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248683,598,523 - 3,649,641 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Bicd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248683,598,688 - 3,650,731 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248683,598,523 - 3,649,641 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
BICD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38992,711,363 - 92,764,833 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl992,711,363 - 92,764,833 (-)EnsemblGRCh38hg38GRCh38
GRCh37995,473,645 - 95,527,115 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36994,513,466 - 94,566,904 (-)NCBINCBI36Build 36hg18NCBI36
Build 34992,553,199 - 92,606,638NCBI
Celera965,915,700 - 65,969,136 (-)NCBICelera
Cytogenetic Map9q22.31NCBI
HuRef965,151,961 - 65,205,073 (-)NCBIHuRef
CHM1_1995,620,081 - 95,673,514 (-)NCBICHM1_1
T2T-CHM13v2.09104,877,924 - 104,931,411 (-)NCBIT2T-CHM13v2.0
Bicd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391349,495,025 - 49,540,502 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1349,495,061 - 49,540,502 (+)EnsemblGRCm39 Ensembl
GRCm381349,341,549 - 49,387,026 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1349,341,585 - 49,387,026 (+)EnsemblGRCm38mm10GRCm38
MGSCv371349,436,918 - 49,482,394 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361349,353,486 - 49,398,962 (+)NCBIMGSCv36mm8
Celera1350,431,086 - 50,476,523 (+)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1325.22NCBI
Bicd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81715,449,011 - 15,511,423 (-)NCBIGRCr8
mRatBN7.21715,259,773 - 15,304,889 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1715,259,773 - 15,304,889 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1715,146,828 - 15,191,665 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01716,751,888 - 16,796,726 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01715,073,624 - 15,118,460 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01715,673,649 - 15,718,035 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1715,673,650 - 15,718,035 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01717,731,018 - 17,775,611 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41721,214,977 - 21,260,729 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11721,214,995 - 21,260,709 (-)NCBI
Celera1714,990,557 - 15,035,504 (-)NCBICelera
Cytogenetic Map17p14NCBI
Bicd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555155,061,005 - 5,103,179 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555155,060,176 - 5,105,298 (+)NCBIChiLan1.0ChiLan1.0
BICD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21146,660,629 - 46,717,041 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1946,663,017 - 46,719,493 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0963,834,515 - 63,890,904 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1991,905,982 - 91,959,186 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl991,909,771 - 91,959,131 (-)Ensemblpanpan1.1panPan2
BICD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1198,697,050 - 98,736,296 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl198,697,075 - 98,734,240 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha199,091,059 - 99,130,138 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0199,313,974 - 99,353,079 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl199,313,980 - 99,353,078 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1198,927,112 - 98,966,197 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0198,662,724 - 98,701,758 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0199,418,306 - 99,457,372 (+)NCBIUU_Cfam_GSD_1.0
Bicd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049448,071,268 - 8,119,191 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364872,255,882 - 2,335,731 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364872,287,736 - 2,335,674 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BICD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl342,393,277 - 42,456,782 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1342,393,270 - 42,456,821 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2343,627,163 - 43,647,661 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BICD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112103,232,602 - 103,281,317 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12103,232,327 - 103,281,288 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603891,504,437 - 91,553,420 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000026007   ⟹   ENSHGLP00000025778
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248683,598,688 - 3,650,731 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000026008   ⟹   ENSHGLP00000025779
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248683,598,688 - 3,650,731 (+)Ensembl
RefSeq Acc Id: XM_004870074   ⟹   XP_004870131
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248683,598,523 - 3,649,641 (+)NCBI
RefSeq Acc Id: XM_004870075   ⟹   XP_004870132
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248683,598,525 - 3,649,641 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004870131 (Get FASTA)   NCBI Sequence Viewer  
  XP_004870132 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000025778
  ENSHGLP00000025779
GenBank Protein JAO00368 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004870131   ⟸   XM_004870074
- Peptide Label: isoform X1
- UniProtKB: A0A0P6K5F9 (UniProtKB/TrEMBL),   G5BQK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004870132   ⟸   XM_004870075
- Peptide Label: isoform X2
- UniProtKB: G5BQK3 (UniProtKB/TrEMBL),   A0AAX6QCE9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000025778   ⟸   ENSHGLT00000026007
Ensembl Acc Id: ENSHGLP00000025779   ⟸   ENSHGLT00000026008


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018347 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000026007 ENTREZGENE
  ENSHGLT00000026008 ENTREZGENE
Gene3D-CATH 1.10.287.1490 UniProtKB/TrEMBL
  6.10.250.2470 UniProtKB/TrEMBL
InterPro BICD UniProtKB/TrEMBL
KEGG Report hgl:101726404 UniProtKB/TrEMBL
NCBI Gene Bicd2 ENTREZGENE
PANTHER PROTEIN BICAUDAL D HOMOLOG 2 UniProtKB/TrEMBL
  PTHR31233 UniProtKB/TrEMBL
Pfam BicD UniProtKB/TrEMBL
UniProt A0A0P6K5F9 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QCE9 ENTREZGENE, UniProtKB/TrEMBL
  G5BQK3 ENTREZGENE, UniProtKB/TrEMBL