Ehd4 (EH-domain containing 4) - Rat Genome Database

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Gene: Ehd4 (EH-domain containing 4) Mus musculus
Analyze
Symbol: Ehd4
Name: EH-domain containing 4
RGD ID: 734141
MGI Page MGI
Description: Enables protein-macromolecule adaptor activity. Involved in cell migration involved in sprouting angiogenesis. Located in perinuclear region of cytoplasm. Is active in adherens junction. Is expressed in several structures, including Meckel's cartilage; appendicular skeleton; axial skeleton; hip; and neural tube. Orthologous to human EHD4 (EH domain containing 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2210022F10Rik; AI197390; AI846352; AV006278; EH domain containing protein MPAST2; EH domain-containing protein 4; mPAST2; PAST homolog 2; Past2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392119,919,958 - 119,985,028 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2119,919,656 - 119,985,087 (-)EnsemblGRCm39 Ensembl
GRCm382120,089,487 - 120,154,575 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2120,089,175 - 120,154,606 (-)EnsemblGRCm38mm10GRCm38
MGSCv372119,915,223 - 119,980,311 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362119,780,928 - 119,846,017 (-)NCBIMGSCv36mm8
Celera2121,247,550 - 121,315,043 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ehd4MouseBloom syndrome  ISOEHD4 (Homo sapiens)8554872ClinVar Annotator: match by term: Bloom syndromeClinVarPMID:28492532
Ehd4Mousecolorectal cancer  ISOEHD4 (Homo sapiens)8554872ClinVar Annotator: match by term: Familial colorectal cancerClinVarPMID:28492532

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ehd4Mouse(+)-schisandrin B multiple interactionsISOEhd4 (Rattus norvegicus)6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of EHD4 mRNA]CTDPMID:31150632
Ehd4Mouse(-)-demecolcine increases expressionISOEHD4 (Homo sapiens)6480464Demecolcine results in increased expression of EHD4 mRNACTDPMID:23649840
Ehd4Mouse(1->4)-beta-D-glucan multiple interactionsEXP 6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of EHD4 mRNACTDPMID:36331819
Ehd4Mouse1,2-dichloroethane increases expressionEXP 6480464ethylene dichloride results in increased expression of EHD4 mRNACTDPMID:28960355
Ehd4Mouse1,2-dimethylhydrazine multiple interactionsEXP 6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of EHD4 mRNACTDPMID:22206623
Ehd4Mouse17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of EHD4 mRNACTDPMID:17942748
Ehd4Mouse17alpha-ethynylestradiol multiple interactionsEXP 6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of EHD4 mRNACTDPMID:17942748
Ehd4Mouse17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of EHD4 mRNACTDPMID:19484750
Ehd4Mouse17beta-estradiol increases expressionISOEHD4 (Homo sapiens)6480464Estradiol results in increased expression of EHD4 mRNACTDPMID:31614463
Ehd4Mouse17beta-estradiol decreases expressionISOEhd4 (Rattus norvegicus)6480464Estradiol results in decreased expression of EHD4 proteinCTDPMID:32145629
Ehd4Mouse2,2',4,4'-Tetrabromodiphenyl ether affects expressionEXP 64804642 more ...CTDPMID:30294300
Ehd4Mouse2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISOEHD4 (Homo sapiens)64804642 more ...CTDPMID:31675489
Ehd4Mouse2,2',4,4'-Tetrabromodiphenyl ether multiple interactionsEXP 6480464[Flame Retardants results in increased abundance of 2 more ...CTDPMID:38995820
Ehd4Mouse2,3',4,4',5-Pentachlorobiphenyl increases expressionEXP 64804642 more ...CTDPMID:31388691
Ehd4Mouse2,3,7,8-tetrachlorodibenzodioxine multiple interactionsEXP 6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of EHD4 mRNA and [TIPARP gene mutant form results in increased susceptibility to Tetrachlorodibenzodioxin] which results in decreased expression of EHD4 mRNACTDPMID:17942748 and PMID:25975270
Ehd4Mouse2,3,7,8-tetrachlorodibenzodioxine increases expressionISOEhd4 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of EHD4 mRNACTDPMID:34747641
Ehd4Mouse2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOEhd4 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in decreased expression of EHD4 mRNACTDPMID:32109520
Ehd4Mouse2,3,7,8-tetrachlorodibenzodioxine increases expressionISOEHD4 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of EHD4 mRNACTDPMID:20106945 more ...
Ehd4Mouse2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of EHD4 mRNACTDPMID:21570461
Ehd4Mouse2,4-dinitrotoluene affects expressionISOEhd4 (Rattus norvegicus)64804642 and 4-dinitrotoluene affects the expression of EHD4 mRNACTDPMID:21346803

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Biological Process
1 to 20 of 21 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
Ehd4Mousecell migration involved in sprouting angiogenesis acts_upstream_of_or_withinIDA 2290270 PMID:33972531UniProtPMID:33972531
Ehd4Mousecell migration involved in sprouting angiogenesis involved_inIDA 2290270 PMID:33972531UniProtPMID:33972531
Ehd4Mousecellular response to growth factor stimulus involved_inIEAUniProtKB:F7F1H3 more ...2290270 EnsemblGO_REF:0000107
Ehd4Mousecellular response to growth factor stimulus involved_inISOEhd4 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Ehd4Mousecellular response to growth factor stimulus  ISOEhd4 (Rattus norvegicus)9068941nerve growth factorRGDPMID:12011113 and REF_RGD_ID:632501
Ehd4Mousecilium assembly involved_inIBAPANTHER:PTN000131009 more ...2290270 GO_CentralGO_REF:0000033
Ehd4Mouseendocytic recycling involved_inISOUniProtKB:Q9H2232290270 GO_CentralGO_REF:0000119
Ehd4Mouseendocytic recycling involved_inISSUniProtKB:Q9H2232290270 UniProtGO_REF:0000024
Ehd4Mouseendocytic recycling involved_inIBAPANTHER:PTN000131009 more ...2290270 GO_CentralGO_REF:0000033
Ehd4Mouseendocytosis involved_inIBAPANTHER:PTN000130974 more ...2290270 GO_CentralGO_REF:0000033
Ehd4Mousepinocytosis involved_inIEAUniProtKB:F7F1H3 more ...2290270 EnsemblGO_REF:0000107
Ehd4Mousepinocytosis involved_inISOEhd4 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Ehd4Mousepinocytosis  ISOEhd4 (Rattus norvegicus)9068941 RGDPMID:12011113 and REF_RGD_ID:632501
Ehd4Mousepositive regulation of peptidyl-tyrosine phosphorylation involved_inISOEhd4 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Ehd4Mousepositive regulation of peptidyl-tyrosine phosphorylation  ISOEhd4 (Rattus norvegicus)9068941 RGDPMID:12011113 and REF_RGD_ID:632501
Ehd4Mouseprotein homooligomerization involved_inISOUniProtKB:Q9H2232290270 GO_CentralGO_REF:0000119
Ehd4Mouseprotein homooligomerization involved_inISSUniProtKB:Q9H2232290270 UniProtGO_REF:0000024
Ehd4Mouseprotein localization to plasma membrane involved_inIBAPANTHER:PTN000131009 more ...2290270 GO_CentralGO_REF:0000033
Ehd4Mouseregulation of endocytosis involved_inIEAUniProtKB:F7F1H3 more ...2290270 EnsemblGO_REF:0000107
Ehd4Mouseregulation of endocytosis involved_inISOEhd4 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
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Cellular Component
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ehd4Mouseadherens junction is_active_inIDA 2290270 PMID:33972531UniProtPMID:33972531
Ehd4Mousecytoplasm is_active_inIBAPANTHER:PTN000130974 more ...2290270 GO_CentralGO_REF:0000033
Ehd4Mouseearly endosome is_active_inIBAPANTHER:PTN000131009 more ...2290270 GO_CentralGO_REF:0000033
Ehd4Mouseearly endosome membrane located_inIEAUniProtKB-SubCell:SL-00932290270 UniProtGO_REF:0000044
Ehd4Mouseendocytic vesicle is_active_inIBAPANTHER:PTN000131009 more ...2290270 GO_CentralGO_REF:0000033
Ehd4Mouseendoplasmic reticulum located_inIEAUniProtKB:Q9H223 and ensembl:ENSP000002203252290270 EnsemblGO_REF:0000107
Ehd4Mouseendoplasmic reticulum located_inISOUniProtKB:Q9H2232290270 GO_CentralGO_REF:0000119
Ehd4Mouseperinuclear region of cytoplasm is_active_inIBAPANTHER:PTN000131009 more ...2290270 GO_CentralGO_REF:0000033
Ehd4Mouseperinuclear region of cytoplasm located_inIDA 2290270 PMID:20489164MGIPMID:20489164
Ehd4Mouseplasma membrane located_inIEAUniProtKB-SubCell:SL-00392290270 UniProtGO_REF:0000044
Ehd4Mouseplasma membrane is_active_inIBAPANTHER:PTN000130974 more ...2290270 GO_CentralGO_REF:0000033
Ehd4Mouserecycling endosome membrane is_active_inIBAPANTHER:PTN000131009 more ...2290270 GO_CentralGO_REF:0000033
Ehd4Mouserecycling endosome membrane located_inISSUniProtKB:Q9H2232290270 UniProtGO_REF:0000024
Ehd4Mouserecycling endosome membrane located_inISOUniProtKB:Q9H2232290270 GO_CentralGO_REF:0000119
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Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
Ehd4MouseATP binding enablesIEAUniProtKB-KW:KW-00672290270 UniProtGO_REF:0000043
Ehd4Mousecalcium ion binding enablesIEAInterPro:IPR0020482290270 InterProGO_REF:0000002
Ehd4MouseGTP binding enablesIEAInterPro:IPR0303812290270 InterProGO_REF:0000002
Ehd4Mouseprotein binding enablesIPIPR:Q8C8R32290270 PMID:20489164MGIPMID:20489164
Ehd4Mouseprotein binding enablesIPIUniProtKB:Q9QY17 and UniProtKB:Q9Z2P62290270 PMID:15371016IntActPMID:15371016
Ehd4Mouseprotein-macromolecule adaptor activity enablesIDA 2290270 PMID:33972531UniProtPMID:33972531

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ehd4Mouseendocytosis pathway  IEA 6907045 KEGGmmu:04144
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ehd4Mouseabnormal glomerular capillary endothelium morphology  IAGP 5509061 MGIPMID:21408024
Ehd4Mouseabnormal glomerular capillary morphology  IAGP 5509061 MGIPMID:21408024
Ehd4Mouseabnormal kidney vasculature morphology  IAGP 5509061 MGIPMID:21408024
Ehd4Mouseabnormal pancreatic islet morphology  IAGP 5509061 MGIPMID:20213691
Ehd4Mouseabnormal proximal convoluted tubule morphology  IAGP 5509061 MGIPMID:21408024
Ehd4Mouseabnormal renal glomerulus basement membrane morphology  IAGP 5509061 MGIPMID:21408024
Ehd4Mouseabnormal renal glomerulus morphology  IAGP 5509061 MGIPMID:21408024
Ehd4Mouseabnormal seminiferous tubule size  IAGP 5509061 MGIPMID:20213691
Ehd4Mouseabnormal spermatid morphology  IAGP 5509061 MGIPMID:20213691
Ehd4Mouseabnormal spermatogenesis  IAGP 5509061 MGIPMID:20213691
Ehd4Mouseabnormal spermiogenesis  IAGP 5509061 MGIPMID:20213691
Ehd4Mouseabsent glomerular endothelium fenestra  IAGP 5509061 MGIPMID:21408024
Ehd4Mousedecreased body size  IAGP 5509061 MGIPMID:21408024
Ehd4Mousedecreased kidney weight  IAGP 5509061 MGIPMID:21408024
Ehd4Mousedecreased male germ cell number  IAGP 5509061 MGIPMID:20213691
Ehd4Mousedecreased testis weight  IAGP 5509061 MGIPMID:20213691
Ehd4Mousedilated renal tubule  IAGP 5509061 MGIPMID:21408024
Ehd4Mouseenlarged seminiferous tubules  IAGP 5509061 MGIPMID:20213691
Ehd4Mouseexpanded mesangial matrix  IAGP 5509061 MGIPMID:21408024
Ehd4Mouseincreased cell proliferation  IAGP 5509061 MGIPMID:20213691
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#
Reference Title
Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12904583   PMID:15155807   PMID:15371016   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16155252   PMID:16602821   PMID:17097635   PMID:19487694   PMID:20213691   PMID:20489164   PMID:21267068   PMID:21308776   PMID:21408024   PMID:21677750   PMID:21873635  
PMID:22083510   PMID:26455409   PMID:26465331   PMID:26884322   PMID:28378742   PMID:28778975   PMID:28943089   PMID:29199018   PMID:29212907   PMID:32325033   PMID:32554809   PMID:33972531  
PMID:35670107  



Ehd4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392119,919,958 - 119,985,028 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2119,919,656 - 119,985,087 (-)EnsemblGRCm39 Ensembl
GRCm382120,089,487 - 120,154,575 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2120,089,175 - 120,154,606 (-)EnsemblGRCm38mm10GRCm38
MGSCv372119,915,223 - 119,980,311 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362119,780,928 - 119,846,017 (-)NCBIMGSCv36mm8
Celera2121,247,550 - 121,315,043 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.16NCBI
EHD4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381541,895,933 - 41,972,557 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1541,895,933 - 41,972,557 (-)EnsemblGRCh38hg38GRCh38
GRCh371542,188,131 - 42,264,755 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361539,978,930 - 40,052,034 (-)NCBINCBI36Build 36hg18NCBI36
Build 341539,978,932 - 40,052,034NCBI
Celera1518,959,279 - 19,032,401 (-)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1519,040,062 - 19,112,734 (-)NCBIHuRef
CHM1_11542,310,118 - 42,383,225 (-)NCBICHM1_1
T2T-CHM13v2.01539,701,891 - 39,778,529 (-)NCBIT2T-CHM13v2.0
Ehd4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83127,511,973 - 127,575,856 (-)NCBIGRCr8
mRatBN7.23107,058,191 - 107,121,985 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3107,058,958 - 107,122,002 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3110,733,330 - 110,797,125 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03119,328,884 - 119,392,677 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03116,989,277 - 117,053,073 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03111,877,853 - 111,941,841 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3111,877,853 - 111,941,841 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03118,425,620 - 118,489,608 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43106,594,931 - 106,658,722 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13106,491,358 - 106,555,150 (-)NCBI
Celera3105,967,084 - 106,030,732 (-)NCBICelera
Cytogenetic Map3q35NCBI
Ehd4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554168,686,709 - 8,739,400 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554168,686,709 - 8,758,096 (-)NCBIChiLan1.0ChiLan1.0
EHD4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21631,137,520 - 31,216,467 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11535,292,150 - 35,369,007 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01520,840,517 - 20,926,900 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11539,010,302 - 39,086,713 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1539,010,302 - 39,086,713 (-)Ensemblpanpan1.1panPan2
EHD4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1308,926,119 - 9,007,207 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl308,929,411 - 9,007,094 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha308,985,219 - 9,066,118 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0309,061,348 - 9,142,314 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl309,062,300 - 9,142,399 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1308,982,300 - 9,063,077 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0309,086,292 - 9,167,405 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0309,221,076 - 9,302,003 (-)NCBIUU_Cfam_GSD_1.0
Ehd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864087,357,122 - 87,446,445 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364715,205,183 - 5,294,557 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364715,205,185 - 5,294,507 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EHD4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1129,374,613 - 129,458,686 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11129,374,515 - 129,460,206 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21144,621,574 - 144,641,532 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EHD4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12641,012,296 - 41,085,738 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2641,012,991 - 41,089,182 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604899,916,538 - 99,989,971 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ehd4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248049,053,321 - 9,128,281 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248049,052,857 - 9,128,141 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Ehd4
2723 total Variants

Predicted Target Of
Summary Value
Count of predictions:1329
Count of miRNA genes:646
Interacting mature miRNAs:807
Transcripts:ENSMUST00000028755, ENSMUST00000148073, ENSMUST00000150240, ENSMUST00000152366
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 58 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1301905Lgth2_mbody length 2 (mouse)Not determined2111173704145173821Mouse
1302033Nsv1_mNeuroadapted Sindbis viral RNA level 1 (mouse)Not determined2111623386145623526Mouse
12904007Cfq7_mconditioned fear QTL 7 (mouse)2118356772125048872Mouse
13506762Tbvq2_mtrabecular bone volume QTL 2 (mouse)2115430481124741920Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
1301909Smdq2_msegregation of mitochondrial DNA QTL 2 (mouse)Not determined292778465126778607Mouse
11039520Ltpr2h_mLeishmania tropica response 2h (mouse)2112212746146213005Mouse
11039521Ltpr2g_mLeishmania tropica response 2g (mouse)2115212857149212994Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse

1 to 10 of 58 rows
RH135958  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382120,090,371 - 120,090,568UniSTSGRCm38
MGSCv372119,916,107 - 119,916,304UniSTSGRCm37
Celera2121,248,434 - 121,248,631UniSTS
Cytogenetic Map2E5UniSTS
AI846352  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382120,089,627 - 120,089,742UniSTSGRCm38
MGSCv372119,915,363 - 119,915,478UniSTSGRCm37
Celera2121,247,690 - 121,247,805UniSTS
Cytogenetic Map2E5UniSTS
Whitehead/MRC_RH21519.24UniSTS
AV006278  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382120,090,504 - 120,090,625UniSTSGRCm38
MGSCv372119,916,240 - 119,916,361UniSTSGRCm37
Celera2121,248,567 - 121,248,688UniSTS
Cytogenetic Map2E5UniSTS
Whitehead/MRC_RH21522.33UniSTS
UniSTS:225362  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382120,139,326 - 120,139,477UniSTSGRCm38
MGSCv372119,965,062 - 119,965,213UniSTSGRCm37
Celera2121,299,763 - 121,299,914UniSTS
Cytogenetic Map2E5UniSTS
BB371349  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382120,089,295 - 120,089,398UniSTSGRCm38
MGSCv372119,915,031 - 119,915,134UniSTSGRCm37
Celera2121,247,358 - 121,247,461UniSTS
Cytogenetic Map2E5UniSTS
Whitehead/MRC_RH21520.76UniSTS






1 to 29 of 29 rows
RefSeq Transcripts NM_001418914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001418915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_133838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_184851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_184852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB239915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB239916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF173639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 29 of 29 rows

Ensembl Acc Id: ENSMUST00000028755   ⟹   ENSMUSP00000028755
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2119,919,656 - 119,985,087 (-)Ensembl
GRCm38.p6 Ensembl2120,089,175 - 120,154,606 (-)Ensembl
Ensembl Acc Id: ENSMUST00000148073
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2119,952,928 - 119,984,943 (-)Ensembl
GRCm38.p6 Ensembl2120,122,447 - 120,154,462 (-)Ensembl
Ensembl Acc Id: ENSMUST00000150240
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2119,932,701 - 119,960,206 (-)Ensembl
GRCm38.p6 Ensembl2120,102,220 - 120,129,725 (-)Ensembl
Ensembl Acc Id: ENSMUST00000152366
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2119,932,886 - 119,968,041 (-)Ensembl
GRCm38.p6 Ensembl2120,102,405 - 120,137,560 (-)Ensembl
RefSeq Acc Id: NM_001418914   ⟹   NP_001405843
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392119,930,030 - 119,985,028 (-)NCBI
RefSeq Acc Id: NM_001418915   ⟹   NP_001405844
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392119,955,950 - 119,985,028 (-)NCBI
RefSeq Acc Id: NM_133838   ⟹   NP_598599
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392119,919,968 - 119,985,028 (-)NCBI
GRCm382120,089,487 - 120,154,575 (-)ENTREZGENE
MGSCv372119,915,223 - 119,980,311 (-)RGD
Celera2121,247,550 - 121,315,043 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_184851
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392119,919,968 - 119,985,028 (-)NCBI
RefSeq Acc Id: NR_184852
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392119,926,436 - 119,985,028 (-)NCBI
RefSeq Acc Id: XM_017319352   ⟹   XP_017174841
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392119,919,958 - 119,968,085 (-)NCBI
GRCm382120,089,487 - 120,137,604 (-)NCBI
Sequence:
RefSeq Acc Id: NP_598599   ⟸   NM_133838
- Peptide Label: isoform 1
- UniProtKB: Q9EQP2 (UniProtKB/Swiss-Prot),   Q3TM70 (UniProtKB/TrEMBL),   Q3TWP9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017174841   ⟸   XM_017319352
- Peptide Label: isoform X1
- UniProtKB: Q3TWP9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000028755   ⟸   ENSMUST00000028755
RefSeq Acc Id: NP_001405843   ⟸   NM_001418914
- Peptide Label: isoform 2
- UniProtKB: Q3TQ74 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001405844   ⟸   NM_001418915
- Peptide Label: isoform 3
Dynamin-type G   EF-hand   EH

Name Modeler Protein Id AA Range Protein Structure
AF-Q9EQP2-F1-model_v2 AlphaFold Q9EQP2 1-541 view protein structure

RGD ID:6847650
Promoter ID:MM_ACW:29479
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:EHD4.DSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362119,916,926 - 119,917,426 (-)MPROMDB
RGD ID:6831226
Promoter ID:MM_KWN:31292
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Lung
Transcripts:OTTMUST00000036246
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362119,955,326 - 119,956,027 (-)MPROMDB
RGD ID:6831225
Promoter ID:MM_KWN:31293
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Lung
Transcripts:OTTMUST00000036245
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362119,963,824 - 119,964,324 (-)MPROMDB
RGD ID:6831228
Promoter ID:MM_KWN:31294
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000036244,   OTTMUST00000036247
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362119,980,066 - 119,980,587 (-)MPROMDB
RGD ID:6878398
Promoter ID:EPDNEW_M2650
Type:initiation region
Name:Ehd4_1
Description:Mus musculus EH-domain containing 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382120,154,521 - 120,154,581EPDNEW


1 to 40 of 40 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000027293 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000028755 ENTREZGENE
  ENSMUST00000028755.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.268.20 UniProtKB/Swiss-Prot
  3.40.50.300 UniProtKB/Swiss-Prot
  EF-hand UniProtKB/Swiss-Prot
InterPro DUF5600 UniProtKB/Swiss-Prot
  Dynamin_N UniProtKB/Swiss-Prot
  EF-hand-dom_pair UniProtKB/Swiss-Prot
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot
  EF_hand_dom UniProtKB/Swiss-Prot
  EH_dom UniProtKB/Swiss-Prot
  EHD_N UniProtKB/Swiss-Prot
  G_DYNAMIN_dom UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
KEGG Report mmu:98878 UniProtKB/Swiss-Prot
MGD MGI:1919619 ENTREZGENE
NCBI Gene Ehd4 ENTREZGENE
PANTHER DYNAMIN ASSOCIATED PROTEIN 160, ISOFORM D UniProtKB/Swiss-Prot
  EH DOMAIN UniProtKB/Swiss-Prot
Pfam DUF5600 UniProtKB/Swiss-Prot
  Dynamin_N UniProtKB/Swiss-Prot
  EF-hand_4 UniProtKB/Swiss-Prot
  EHD_N UniProtKB/Swiss-Prot
PhenoGen Ehd4 PhenoGen
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot
  EF_HAND_2 UniProtKB/Swiss-Prot
  G_DYNAMIN_2 UniProtKB/Swiss-Prot
  PS50031 UniProtKB/Swiss-Prot
SMART SM00027 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot
  SSF52540 UniProtKB/Swiss-Prot
UniProt EHD4_MOUSE UniProtKB/Swiss-Prot
  Q1MWP8_MOUSE UniProtKB/TrEMBL
  Q1MWP9_MOUSE UniProtKB/TrEMBL
  Q3TM70 ENTREZGENE, UniProtKB/TrEMBL
  Q3TQ74 ENTREZGENE, UniProtKB/TrEMBL
  Q3TWP9 ENTREZGENE, UniProtKB/TrEMBL
  Q91VL7_MOUSE UniProtKB/TrEMBL
  Q9EQP2 ENTREZGENE
1 to 40 of 40 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Ehd4  EH-domain containing 4  2210022F10Rik  RIKEN cDNA 2210022F10 gene  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 2210022F10Rik  RIKEN cDNA 2210022F10 gene  Ehd4  EH-domain containing 4  Symbol and/or name change 5135510 APPROVED