Ugdh (UDP-glucose dehydrogenase) - Rat Genome Database

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Gene: Ugdh (UDP-glucose dehydrogenase) Mus musculus
Analyze
Symbol: Ugdh
Name: UDP-glucose dehydrogenase
RGD ID: 734074
MGI Page MGI
Description: Exhibits UDP-glucose 6-dehydrogenase activity. Involved in chondroitin sulfate biosynthetic process; gastrulation with mouth forming second; and heparan sulfate proteoglycan biosynthetic process. Predicted to localize to cytosol and nucleoplasm. Is expressed in several structures, including alimentary system; brain; integumental system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in early infantile epileptic encephalopathy. Orthologous to human UGDH (UDP-glucose 6-dehydrogenase); PARTICIPATES IN congenital sucrase-isomaltase deficiency pathway; galactokinase deficiency pathway; GALE deficiency pathway; INTERACTS WITH 1,2-dimethylhydrazine; 1-benzofuran; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: UDP-Glc dehydrogenase; UDP-GlcDH; UDP-glucose 6-dehydrogenase; Udpgd; Udpgdh
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39565,570,550 - 65,593,185 (-)NCBIGRCm39mm39
GRCm39 Ensembl565,570,564 - 65,593,292 (-)Ensembl
GRCm38565,413,207 - 65,435,842 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl565,413,221 - 65,435,949 (-)EnsemblGRCm38mm10GRCm38
MGSCv37565,804,460 - 65,827,081 (-)NCBIGRCm37mm9NCBIm37
MGSCv36565,692,356 - 65,714,977 (-)NCBImm8
Celera562,689,905 - 62,712,959 (-)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map533.67NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (EXP)
1-benzofuran  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-hydroxyethyl methacrylate  (ISO)
2-methylcholine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-chloropropane-1,2-diol  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4-amino-2,6-dinitrotoluene  (ISO)
5-fluorouracil  (ISO)
9-cis-retinoic acid  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aldrin  (EXP)
ammonium chloride  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (ISO)
bromobenzene  (ISO)
butanal  (ISO)
cadmium atom  (EXP)
cadmium sulfate  (ISO)
captan  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
celastrol  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (EXP)
cyclosporin A  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dichloroacetic acid  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
ethanol  (EXP,ISO)
eugenol  (ISO)
felbamate  (ISO)
finasteride  (ISO)
flutamide  (ISO)
folic acid  (EXP)
folpet  (EXP)
fumonisin B1  (EXP)
furan  (EXP,ISO)
gabapentin  (ISO)
gedunin  (ISO)
genistein  (ISO)
gentamycin  (ISO)
griseofulvin  (EXP)
isoflavones  (ISO)
isoprenaline  (EXP)
ketamine  (ISO)
lead(II) chloride  (ISO)
leflunomide  (ISO)
mercury dichloride  (ISO)
methylisothiazolinone  (ISO)
methylseleninic acid  (ISO)
microcystin-LR  (EXP)
N-acetyl-L-cysteine  (ISO)
N-ethyl-N-nitrosourea  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-methylformamide  (EXP)
N-nitrosodiethylamine  (EXP,ISO)
naphthalene-1,5-diamine  (EXP)
nefazodone  (ISO)
nimesulide  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (EXP)
perfluorooctanoic acid  (ISO)
permethrin  (EXP)
phenformin  (ISO)
phenobarbital  (EXP,ISO)
phenytoin  (ISO)
piperine  (ISO)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (EXP)
pyrogallol  (EXP)
quercetin  (ISO)
rifampicin  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sulforaphane  (ISO)
tanespimycin  (ISO)
tert-butyl ethyl ether  (ISO)
tetrachloromethane  (EXP,ISO)
thiabendazole  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
tolbutamide  (ISO)
topotecan  (ISO)
troglitazone  (EXP)
tunicamycin  (ISO)
valdecoxib  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IBA,ISO)
nucleoplasm  (ISO)
nucleus  (IBA)

References

Additional References at PubMed
PMID:9753608   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14505572   PMID:14610273   PMID:14681479   PMID:15489334   PMID:15755804  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17967808   PMID:18267097   PMID:18307411   PMID:18799693   PMID:21267068   PMID:21873635   PMID:22745308   PMID:22815472  
PMID:24859727   PMID:26295701   PMID:26336360   PMID:27829154   PMID:28378742   PMID:29530978   PMID:29791855   PMID:30550785   PMID:32325033  


Genomics

Comparative Map Data
Ugdh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39565,570,550 - 65,593,185 (-)NCBIGRCm39mm39
GRCm39 Ensembl565,570,564 - 65,593,292 (-)Ensembl
GRCm38565,413,207 - 65,435,842 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl565,413,221 - 65,435,949 (-)EnsemblGRCm38mm10GRCm38
MGSCv37565,804,460 - 65,827,081 (-)NCBIGRCm37mm9NCBIm37
MGSCv36565,692,356 - 65,714,977 (-)NCBImm8
Celera562,689,905 - 62,712,959 (-)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map533.67NCBI
UGDH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl439,498,755 - 39,528,311 (-)EnsemblGRCh38hg38GRCh38
GRCh38439,498,755 - 39,527,439 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37439,500,375 - 39,529,059 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36439,176,770 - 39,205,606 (-)NCBINCBI36hg18NCBI36
Build 34439,322,945 - 39,351,539NCBI
Celera439,938,164 - 39,967,004 (-)NCBI
Cytogenetic Map4p14NCBI
HuRef438,825,375 - 38,854,230 (-)NCBIHuRef
CHM1_1439,499,802 - 39,528,655 (-)NCBICHM1_1
Ugdh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21442,848,704 - 42,872,351 (+)NCBI
Rnor_6.0 Ensembl1444,479,614 - 44,502,845 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01444,479,614 - 44,502,845 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01444,299,226 - 44,322,226 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41445,542,781 - 45,570,961 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11445,545,171 - 45,573,352 (+)NCBI
Celera1441,999,555 - 42,023,022 (+)NCBICelera
Cytogenetic Map14p11NCBI
Ugdh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554437,868,893 - 7,882,129 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554437,868,893 - 7,882,136 (+)NCBIChiLan1.0ChiLan1.0
UGDH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1439,679,915 - 39,708,215 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl439,681,300 - 39,708,215 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0433,827,532 - 33,856,204 (-)NCBIMhudiblu_PPA_v0panPan3
UGDH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1372,935,532 - 72,964,151 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl372,839,920 - 72,963,208 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha375,481,824 - 75,511,112 (+)NCBI
ROS_Cfam_1.0373,708,348 - 73,737,653 (+)NCBI
UMICH_Zoey_3.1372,974,965 - 73,004,279 (+)NCBI
UNSW_CanFamBas_1.0373,121,242 - 73,150,553 (+)NCBI
UU_Cfam_GSD_1.0373,507,747 - 73,537,066 (+)NCBI
Ugdh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528539,179,915 - 39,207,994 (+)NCBI
SpeTri2.0NW_0049364827,090,241 - 7,118,315 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UGDH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl830,725,288 - 30,759,326 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1830,725,281 - 30,759,359 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2832,340,313 - 32,374,310 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UGDH
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12710,781,324 - 10,810,595 (+)NCBI
ChlSab1.1 Ensembl2710,781,502 - 10,810,817 (+)Ensembl
Ugdh
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248704,768,307 - 4,801,333 (+)NCBI

Position Markers
Ugdh  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5C3.1UniSTS
cM Map538.0UniSTS
D5Mit15  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38565,422,974 - 65,423,122UniSTSGRCm38
MGSCv37565,814,213 - 65,814,361UniSTSGRCm37
Celera562,699,651 - 62,699,797UniSTS
Cytogenetic Map5C3.1UniSTS
cM Map539.0UniSTS
Whitehead Genetic526.2UniSTS
Whitehead_YAC5 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5884069387693978Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526236236138457140Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined31975890100630065Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined31975890100630065Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53333132567331534Mouse
1301845Lxw4_mlupus BXSB x NZW 4 (mouse)Not determined53553712069537252Mouse
11049558Lmr24b_mleishmaniasis resistance 24b (mouse)53553712069537252Mouse
11049559Lmr24c_mleishmaniasis resistance 24c (mouse)53553712069537252Mouse
11049561Lmr24e_mleishmaniasis resistance 24e (mouse)53553712069537252Mouse
1301223Hdlq7_mHDL QTL 7 (mouse)Not determined53569722669697372Mouse
13464252Ahl10_mage related hearing loss, early onset 10 (mouse)53569722669697372Mouse
4141647Hrvhf1_mheart rate variability, high frequency 1 (mouse)Not determined3627608170276081Mouse
1301170Lith13_mlithogenic gene 13 (mouse)Not determined53633714470337256Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537424144112317856Mouse
13464246Ahl11_mage related hearing loss, early onset 11 (mouse)53748643571486554Mouse
1300951Gbvq1_mgallstone bladder volume QTL 1 (mouse)Not determined53795433971954456Mouse
13464245Ahl12_mage related hearing loss, early onset 12 (mouse)53795433971954456Mouse
1301698Pcfm4_mperiosteal circumference and femur length 4 (mouse)Not determined54442850078428622Mouse
13207584Mwmlpt4_mMorris water maze latency to platform, training, 4 (mouse)54616526380165263Mouse
13207588Mwmlpa4_mMorris water maze latency to platform, all, 4 (mouse)54616526380165263Mouse
14746981Manh57_mmandible shape 57 (mouse)54701239981012399Mouse
1300854Lmr3_mleishmaniasis resistance 3 (mouse)Not determined55253712081227149Mouse
11041665Lmr24_mleishmaniasis resistance 24 (mouse)552537120107173175Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552537120107173175Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554342835126924008Mouse
1301243Bmd2_mbone mineral density 2 (mouse)Not determined555230992100307666Mouse
4142317Rgcs1_mretinal ganglion cell susceptible 1 (mouse)Not determined55230992108614761Mouse
13464248Ahl13_mage related hearing loss, early onset 13 (mouse)55548853189488652Mouse
10043962Obq27_mobesity QTL 27 (mouse)Not determined55612831290128312Mouse
10044005Ahl7_mage related hearing loss 7 (mouse)Not determined55816984192169980Mouse
11040589Lmr3a_mleishmaniasis resistance 3a (mouse)55945495493455133Mouse
11040590Lmr3b_mleishmaniasis resistance 3b (mouse)55945495493455133Mouse
11040591Lmr3c_mleishmaniasis resistance 3c (mouse)55945495493455133Mouse
11040592Lmr3d_mleishmaniasis resistance 3d (mouse)55945495493455133Mouse
1301843Listr1_mlisteriosis resistance 1 (mouse)Not determined56009823494098356Mouse
13464247Ahl14_mage related hearing loss, early onset 14 (mouse)56025521594255313Mouse
4142428Modvl1_mmodifier of vacuolated lens 1 (mouse)Not determined6250272196502841Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56250272196502841Mouse
11252124Modvl6_mmodifier of vacuolated lens 6 (mouse)56250272196502841Mouse
13464250Ahl15_mage related hearing loss, early onset 15 (mouse)56250272196502841Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563548099104239199Mouse
11049560Lmr24d_mleishmaniasis resistance 24d (mouse)56422703098227149Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1041
Count of miRNA genes:532
Interacting mature miRNAs:648
Transcripts:ENSMUST00000031103, ENSMUST00000117542, ENSMUST00000125375, ENSMUST00000131263, ENSMUST00000134123, ENSMUST00000139402
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_009466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC136513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF061017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000031103   ⟹   ENSMUSP00000031103
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl565,413,221 - 65,435,949 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125375
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl565,413,224 - 65,425,474 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131263   ⟹   ENSMUSP00000118999
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl565,423,354 - 65,428,387 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139402
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl565,417,518 - 65,422,806 (-)Ensembl
RefSeq Acc Id: NM_009466   ⟹   NP_033492
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39565,570,564 - 65,593,185 (-)NCBI
GRCm38565,413,221 - 65,435,842 (-)NCBI
MGSCv37565,804,460 - 65,827,081 (-)RGD
Celera562,689,905 - 62,712,959 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006503862   ⟹   XP_006503925
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39565,570,550 - 65,585,710 (-)NCBI
GRCm38565,413,207 - 65,428,377 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_033492   ⟸   NM_009466
- UniProtKB: O70475 (UniProtKB/Swiss-Prot),   Q3TS38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006503925   ⟸   XM_006503862
- Peptide Label: isoform X1
- UniProtKB: O70475 (UniProtKB/Swiss-Prot),   Q3TS38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000031103   ⟸   ENSMUST00000031103
RefSeq Acc Id: ENSMUSP00000118999   ⟸   ENSMUST00000131263
Protein Domains
UDPG_MGDP_dh_C   UDPG_MGDP_dh_N

Promoters
RGD ID:6886770
Promoter ID:EPDNEW_M6836
Type:multiple initiation site
Name:Ugdh_2
Description:Mus musculus UDP-glucose dehydrogenase , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6837  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38565,435,725 - 65,435,785EPDNEW
RGD ID:6886814
Promoter ID:EPDNEW_M6837
Type:initiation region
Name:Ugdh_1
Description:Mus musculus UDP-glucose dehydrogenase , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6836  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38565,435,889 - 65,435,949EPDNEW
RGD ID:6838581
Promoter ID:MM_KWN:42383
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000070366
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36565,812,151 - 65,812,651 (-)MPROMDB
RGD ID:6838585
Promoter ID:MM_KWN:42384
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000070365,   OTTMUST00000070368
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36565,815,401 - 65,815,901 (-)MPROMDB
RGD ID:6838583
Promoter ID:MM_KWN:42385
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:OTTMUST00000070367
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36565,819,656 - 65,820,156 (-)MPROMDB
RGD ID:6838579
Promoter ID:MM_KWN:42386
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000117542,   OTTMUST00000070363
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36565,826,916 - 65,827,727 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1306785 AgrOrtholog
Ensembl Genes ENSMUSG00000029201 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000031103 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000118999 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000031103 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000131263 UniProtKB/TrEMBL
InterPro 6-PGluconate_DH-like_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UDP-Glc/GDP-Man UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UDP-Glc/GDP-Man_DH_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UDP-Glc/GDP-Man_DH_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UDP-Glc/GDP-Man_DH_dimer UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UDP-Glc/GDP-Man_DH_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UDPglc_DH_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22235 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1306785 ENTREZGENE
NCBI Gene 22235 ENTREZGENE
PANTHER PTHR11374 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam UDPG_MGDP_dh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UDPG_MGDP_dh_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UDPG_MGDP_dh_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ugdh PhenoGen
PIRSF UDPglc_DH_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UDPglc_GDPman_dh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART UDPG_MGDP_dh_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48179 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF51735 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52413 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs NDP-sugDHase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YXP9_MOUSE UniProtKB/TrEMBL
  O70475 ENTREZGENE
  Q3TI06_MOUSE UniProtKB/TrEMBL
  Q3TJ71_MOUSE UniProtKB/TrEMBL
  Q3TJE8_MOUSE UniProtKB/TrEMBL
  Q3TS38 ENTREZGENE, UniProtKB/TrEMBL
  Q3UIZ1_MOUSE UniProtKB/TrEMBL
  UGDH_MOUSE UniProtKB/Swiss-Prot