Ugdh (UDP-glucose dehydrogenase) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Ugdh (UDP-glucose dehydrogenase) Mus musculus
Analyze
Symbol: Ugdh
Name: UDP-glucose dehydrogenase
RGD ID: 734074
MGI Page MGI
Description: Enables UDP-glucose 6-dehydrogenase activity. Involved in UDP-glucuronate biosynthetic process; gastrulation with mouth forming second; and proteoglycan biosynthetic process. Predicted to be located in nucleoplasm. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including alimentary system; brain; heart; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 84. Orthologous to human UGDH (UDP-glucose 6-dehydrogenase).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: UDP-Glc dehydrogenase; UDP-GlcDH; UDP-glucose 6-dehydrogenase; Udpgd; Udpgdh
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39565,570,550 - 65,593,185 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl565,570,564 - 65,593,292 (-)EnsemblGRCm39 Ensembl
GRCm38565,413,207 - 65,435,842 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl565,413,221 - 65,435,949 (-)EnsemblGRCm38mm10GRCm38
MGSCv37565,804,460 - 65,827,081 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36565,692,356 - 65,714,977 (-)NCBIMGSCv36mm8
Celera562,689,905 - 62,712,959 (-)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map533.67NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
1-benzofuran  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-hydroxyethyl methacrylate  (ISO)
2-methylcholine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-chloropropane-1,2-diol  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (ISO)
5-fluorouracil  (ISO)
9-cis-retinoic acid  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
aldrin  (EXP)
amitrole  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenous acid  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bromobenzene  (ISO)
butanal  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (ISO)
cadmium sulfate  (ISO)
caffeine  (ISO)
captan  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
celastrol  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (EXP)
cyclosporin A  (ISO)
DDE  (ISO)
deguelin  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dichloroacetic acid  (EXP)
dioxygen  (ISO)
diquat  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP,ISO)
eugenol  (ISO)
felbamate  (ISO)
finasteride  (ISO)
flutamide  (ISO)
folic acid  (EXP)
folpet  (EXP)
fumonisin B1  (EXP)
furan  (EXP,ISO)
gabapentin  (ISO)
gedunin  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glyphosate  (EXP)
griseofulvin  (EXP)
inulin  (EXP)
isoflavones  (ISO)
isoprenaline  (EXP)
ivermectin  (ISO)
ketamine  (ISO)
lead diacetate  (ISO)
lead(II) chloride  (ISO)
leflunomide  (ISO)
mercury dichloride  (ISO)
methylisothiazolinone  (ISO)
methylseleninic acid  (ISO)
microcystin-LR  (EXP)
N(4)-hydroxycytidine  (EXP)
N-acetyl-L-cysteine  (ISO)
N-ethyl-N-nitrosourea  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-methylformamide  (EXP)
N-nitrosodiethylamine  (EXP,ISO)
naphthalene-1,5-diamine  (EXP)
nefazodone  (ISO)
nimesulide  (ISO)
Nutlin-3  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
pentachlorophenol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
permethrin  (EXP)
phenformin  (ISO)
phenobarbital  (EXP,ISO)
phenytoin  (ISO)
piperine  (ISO)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (EXP)
pyrogallol  (EXP)
quercetin  (ISO)
rifampicin  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sulforaphane  (ISO)
tanespimycin  (ISO)
tert-butyl ethyl ether  (ISO)
tetrachloromethane  (EXP,ISO)
thiabendazole  (ISO)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
tolbutamide  (ISO)
topotecan  (ISO)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (EXP)
tunicamycin  (ISO)
valdecoxib  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Molecular cloning and characterization of the human and mouse UDP-glucose dehydrogenase genes. Spicer AP, etal., J Biol Chem 1998 Sep 25;273(39):25117-24.
Additional References at PubMed
PMID:9753608   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14505572   PMID:14610273   PMID:14681479   PMID:15489334   PMID:15755804  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17967808   PMID:18267097   PMID:18307411   PMID:18799693   PMID:21267068   PMID:21873635   PMID:22745308   PMID:22815472  
PMID:24859727   PMID:26295701   PMID:26336360   PMID:27829154   PMID:28378742   PMID:29530978   PMID:29791855   PMID:30550785   PMID:31162944   PMID:32325033   PMID:32768525   PMID:36107941  
PMID:36114006   PMID:37169760   PMID:37858159   PMID:38367236   PMID:38374152  


Genomics

Comparative Map Data
Ugdh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39565,570,550 - 65,593,185 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl565,570,564 - 65,593,292 (-)EnsemblGRCm39 Ensembl
GRCm38565,413,207 - 65,435,842 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl565,413,221 - 65,435,949 (-)EnsemblGRCm38mm10GRCm38
MGSCv37565,804,460 - 65,827,081 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36565,692,356 - 65,714,977 (-)NCBIMGSCv36mm8
Celera562,689,905 - 62,712,959 (-)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map533.67NCBI
UGDH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38439,498,755 - 39,527,439 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl439,498,755 - 39,528,311 (-)EnsemblGRCh38hg38GRCh38
GRCh37439,500,375 - 39,529,059 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36439,176,770 - 39,205,606 (-)NCBINCBI36Build 36hg18NCBI36
Build 34439,322,945 - 39,351,539NCBI
Celera439,938,164 - 39,967,004 (-)NCBICelera
Cytogenetic Map4p14NCBI
HuRef438,825,375 - 38,854,230 (-)NCBIHuRef
CHM1_1439,499,802 - 39,528,655 (-)NCBICHM1_1
T2T-CHM13v2.0439,468,409 - 39,497,229 (-)NCBIT2T-CHM13v2.0
Ugdh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81443,202,480 - 43,226,002 (+)NCBIGRCr8
mRatBN7.21442,848,704 - 42,872,351 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1442,848,854 - 42,872,354 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1443,202,670 - 43,226,148 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01444,502,588 - 44,526,066 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01442,982,708 - 43,006,181 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01444,479,614 - 44,502,845 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1444,479,614 - 44,502,845 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01444,299,226 - 44,322,226 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41445,542,781 - 45,570,961 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11445,545,171 - 45,573,352 (+)NCBI
Celera1441,999,555 - 42,023,022 (+)NCBICelera
Cytogenetic Map14p11NCBI
Ugdh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554437,868,893 - 7,882,129 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554437,868,893 - 7,882,136 (+)NCBIChiLan1.0ChiLan1.0
UGDH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2339,688,142 - 39,716,993 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1439,880,751 - 39,909,008 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0433,827,532 - 33,856,204 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1439,679,915 - 39,708,215 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl439,681,300 - 39,708,215 (-)Ensemblpanpan1.1panPan2
UGDH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1372,935,532 - 72,964,151 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl372,839,920 - 72,963,208 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha375,481,824 - 75,511,112 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0373,708,348 - 73,737,653 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl373,553,586 - 73,737,645 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1372,974,965 - 73,004,279 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0373,121,242 - 73,150,553 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0373,507,747 - 73,537,066 (+)NCBIUU_Cfam_GSD_1.0
Ugdh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528539,179,915 - 39,207,994 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364827,089,621 - 7,118,284 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364827,090,241 - 7,118,315 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UGDH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl830,725,288 - 30,759,326 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1830,725,281 - 30,759,359 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2832,340,313 - 32,374,310 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UGDH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12710,781,324 - 10,810,595 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2710,781,502 - 10,810,817 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604757,174,192 - 57,202,679 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ugdh
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248704,782,252 - 4,799,703 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248704,768,307 - 4,801,333 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1041
Count of miRNA genes:532
Interacting mature miRNAs:648
Transcripts:ENSMUST00000031103, ENSMUST00000117542, ENSMUST00000125375, ENSMUST00000131263, ENSMUST00000134123, ENSMUST00000139402
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301843Listr1_mlisteriosis resistance 1 (mouse)Not determined56024608194246203Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56265056896650688Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53348866767488876Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552694462107321041Mouse
1300951Gbvq1_mgallstone bladder volume QTL 1 (mouse)Not determined53811168172111798Mouse
14746981Manh57_mmandible shape 57 (mouse)54716974281169742Mouse
1301845Lxw4_mlupus BXSB x NZW 4 (mouse)Not determined53569446269694594Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563705442104387065Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
1301698Pcfm4_mperiosteal circumference and femur length 4 (mouse)Not determined54458584378585965Mouse
4142317Rgcs1_mretinal ganglion cell susceptible 1 (mouse)Not determined55388334108762627Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
1301170Lith13_mlithogenic gene 13 (mouse)Not determined53649448670494598Mouse
10043962Obq27_mobesity QTL 27 (mouse)Not determined55628565590285655Mouse
4142428Modvl1_mmodifier of vacuolated lens 1 (mouse)Not determined6265056896650688Mouse
11040589Lmr3a_mleishmaniasis resistance 3a (mouse)55960280193602980Mouse
11040590Lmr3b_mleishmaniasis resistance 3b (mouse)55960280193602980Mouse
11040591Lmr3c_mleishmaniasis resistance 3c (mouse)55960280193602980Mouse
1301243Bmd2_mbone mineral density 2 (mouse)Not determined555388334100455525Mouse
13207584Mwmlpt4_mMorris water maze latency to platform, training, 4 (mouse)54632260680322606Mouse
11041665Lmr24_mleishmaniasis resistance 24 (mouse)552694462107321041Mouse
13207588Mwmlpa4_mMorris water maze latency to platform, all, 4 (mouse)54632260680322606Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
4141647Hrvhf1_mheart rate variability, high frequency 1 (mouse)Not determined3643342370433423Mouse
11049560Lmr24d_mleishmaniasis resistance 24d (mouse)56437487798374996Mouse
11049561Lmr24e_mleishmaniasis resistance 24e (mouse)53569446269694594Mouse
13464252Ahl10_mage related hearing loss, early onset 10 (mouse)53585456869854714Mouse
1301223Hdlq7_mHDL QTL 7 (mouse)Not determined53585456869854714Mouse
13464248Ahl13_mage related hearing loss, early onset 13 (mouse)55564587489645995Mouse
11252124Modvl6_mmodifier of vacuolated lens 6 (mouse)56265056896650688Mouse
13464250Ahl15_mage related hearing loss, early onset 15 (mouse)56265056896650688Mouse
13464245Ahl12_mage related hearing loss, early onset 12 (mouse)53811168172111798Mouse
11040592Lmr3d_mleishmaniasis resistance 3d (mouse)55960280193602980Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
13464247Ahl14_mage related hearing loss, early onset 14 (mouse)56040306294403160Mouse
13464246Ahl11_mage related hearing loss, early onset 11 (mouse)53764377771643896Mouse
10044005Ahl7_mage related hearing loss 7 (mouse)Not determined55833050292330641Mouse
11049558Lmr24b_mleishmaniasis resistance 24b (mouse)53569446269694594Mouse
11049559Lmr24c_mleishmaniasis resistance 24c (mouse)53569446269694594Mouse

Markers in Region
Ugdh  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5C3.1UniSTS
cM Map538.0UniSTS
D5Mit15  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38565,422,974 - 65,423,122UniSTSGRCm38
MGSCv37565,814,213 - 65,814,361UniSTSGRCm37
Celera562,699,651 - 62,699,797UniSTS
Cytogenetic Map5C3.1UniSTS
cM Map539.0UniSTS
Whitehead Genetic526.2UniSTS
Whitehead_YAC5 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_009466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC136513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF061017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000031103   ⟹   ENSMUSP00000031103
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,570,564 - 65,593,292 (-)Ensembl
GRCm38.p6 Ensembl565,413,221 - 65,435,949 (-)Ensembl
Ensembl Acc Id: ENSMUST00000125375
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,570,567 - 65,582,817 (-)Ensembl
GRCm38.p6 Ensembl565,413,224 - 65,425,474 (-)Ensembl
Ensembl Acc Id: ENSMUST00000131263   ⟹   ENSMUSP00000118999
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,580,697 - 65,585,730 (-)Ensembl
GRCm38.p6 Ensembl565,423,354 - 65,428,387 (-)Ensembl
Ensembl Acc Id: ENSMUST00000139402
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,574,861 - 65,580,149 (-)Ensembl
GRCm38.p6 Ensembl565,417,518 - 65,422,806 (-)Ensembl
RefSeq Acc Id: NM_009466   ⟹   NP_033492
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39565,570,564 - 65,593,185 (-)NCBI
GRCm38565,413,221 - 65,435,842 (-)NCBI
MGSCv37565,804,460 - 65,827,081 (-)RGD
Celera562,689,905 - 62,712,959 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006503862   ⟹   XP_006503925
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39565,570,550 - 65,585,710 (-)NCBI
GRCm38565,413,207 - 65,428,377 (-)NCBI
Sequence:
RefSeq Acc Id: NP_033492   ⟸   NM_009466
- UniProtKB: O70475 (UniProtKB/Swiss-Prot),   Q3TS38 (UniProtKB/TrEMBL),   Q3TJ71 (UniProtKB/TrEMBL),   Q3TJE8 (UniProtKB/TrEMBL),   Q3UIZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006503925   ⟸   XM_006503862
- Peptide Label: isoform X1
- UniProtKB: O70475 (UniProtKB/Swiss-Prot),   Q3TS38 (UniProtKB/TrEMBL),   Q3TJ71 (UniProtKB/TrEMBL),   Q3TJE8 (UniProtKB/TrEMBL),   Q3UIZ1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000031103   ⟸   ENSMUST00000031103
Ensembl Acc Id: ENSMUSP00000118999   ⟸   ENSMUST00000131263
Protein Domains
UDP-glucose/GDP-mannose dehydrogenase C-terminal   UDP-glucose/GDP-mannose dehydrogenase N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O70475-F1-model_v2 AlphaFold O70475 1-493 view protein structure

Promoters
RGD ID:6886770
Promoter ID:EPDNEW_M6836
Type:multiple initiation site
Name:Ugdh_2
Description:Mus musculus UDP-glucose dehydrogenase , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6837  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38565,435,725 - 65,435,785EPDNEW
RGD ID:6886814
Promoter ID:EPDNEW_M6837
Type:initiation region
Name:Ugdh_1
Description:Mus musculus UDP-glucose dehydrogenase , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6836  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38565,435,889 - 65,435,949EPDNEW
RGD ID:6838581
Promoter ID:MM_KWN:42383
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000070366
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36565,812,151 - 65,812,651 (-)MPROMDB
RGD ID:6838585
Promoter ID:MM_KWN:42384
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000070365,   OTTMUST00000070368
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36565,815,401 - 65,815,901 (-)MPROMDB
RGD ID:6838583
Promoter ID:MM_KWN:42385
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:OTTMUST00000070367
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36565,819,656 - 65,820,156 (-)MPROMDB
RGD ID:6838579
Promoter ID:MM_KWN:42386
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000117542,   OTTMUST00000070363
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36565,826,916 - 65,827,727 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1306785 AgrOrtholog
Ensembl Genes ENSMUSG00000029201 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000031103 ENTREZGENE
  ENSMUST00000031103.14 UniProtKB/Swiss-Prot
  ENSMUST00000131263.3 UniProtKB/TrEMBL
Gene3D-CATH Cytochrome c1, transmembrane anchor, C-terminal UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD(P)-binding Rossmann-like Domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro 6-PGluconate_DH-like_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UDP-Glc/GDP-Man UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UDP-Glc/GDP-Man_DH_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UDP-Glc/GDP-Man_DH_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UDP-Glc/GDP-Man_DH_dimer UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UDP-Glc/GDP-Man_DH_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UDPglc_DH_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22235 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1306785 ENTREZGENE
NCBI Gene 22235 ENTREZGENE
PANTHER PTHR11374 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UDP-GLUCOSE 6-DEHYDROGENASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam UDPG_MGDP_dh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UDPG_MGDP_dh_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UDPG_MGDP_dh_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ugdh PhenoGen
PIRSF UDPglc_DH_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UDPglc_GDPman_dh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART UDPG_MGDP_dh_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48179 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF51735 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52413 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YXP9_MOUSE UniProtKB/TrEMBL
  O70475 ENTREZGENE
  Q3TI06_MOUSE UniProtKB/TrEMBL
  Q3TJ71 ENTREZGENE, UniProtKB/TrEMBL
  Q3TJE8 ENTREZGENE, UniProtKB/TrEMBL
  Q3TS38 ENTREZGENE, UniProtKB/TrEMBL
  Q3UIZ1 ENTREZGENE, UniProtKB/TrEMBL
  UGDH_MOUSE UniProtKB/Swiss-Prot