Galnt1 (polypeptide N-acetylgalactosaminyltransferase 1) - Rat Genome Database

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Gene: Galnt1 (polypeptide N-acetylgalactosaminyltransferase 1) Mus musculus
Analyze
Symbol: Galnt1
Name: polypeptide N-acetylgalactosaminyltransferase 1
RGD ID: 733502
MGI Page MGI
Description: Enables polypeptide N-acetylgalactosaminyltransferase activity. Acts upstream of or within protein O-linked glycosylation. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in Golgi apparatus. Is expressed in several structures, including alimentary system; brain; respiratory system; sensory organ; and skeleton. Used to study heart valve disease. Orthologous to human GALNT1 (polypeptide N-acetylgalactosaminyltransferase 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: galNAc-T1; polypeptide GalNAc transferase 1; pp-GaNTase 1; ppGaNTase-T1; protein-UDP acetylgalactosaminyltransferase 1; UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 1; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm19223  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391824,338,401 - 24,419,873 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1824,338,401 - 24,419,875 (+)EnsemblGRCm39 Ensembl
GRCm381824,205,321 - 24,286,816 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1824,205,344 - 24,286,818 (+)EnsemblGRCm38mm10GRCm38
MGSCv371824,363,845 - 24,445,317 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361824,348,451 - 24,428,655 (+)NCBIMGSCv36mm8
Celera1041,782,754 - 41,783,526 (-)NCBICelera
Cytogenetic Map18A2NCBI
cM Map1812.9NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
2-methoxyethanol  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (EXP,ISO)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bisphenol A  (ISO)
buspirone  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
chromium(6+)  (ISO)
cobalt dichloride  (ISO)
cocaine  (ISO)
coumestrol  (ISO)
cycloheximide  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
dioxygen  (EXP)
disodium selenite  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
ethanol  (EXP)
flutamide  (ISO)
folic acid  (EXP)
fulvestrant  (ISO)
gentamycin  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
kojic acid  (ISO)
methimazole  (ISO)
methyl methanesulfonate  (ISO)
methylseleninic acid  (ISO)
NAD zwitterion  (ISO)
NAD(+)  (ISO)
NMN zwitterion  (ISO)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
selenium atom  (ISO)
Soman  (ISO)
succimer  (EXP)
sulfadimethoxine  (ISO)
T-2 toxin  (ISO)
tert-butyl hydroperoxide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trichloroethene  (EXP,ISO)
valproic acid  (EXP,ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Cloning and characterization of a ninth member of the UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase family, ppGaNTase-T9. Ten Hagen KG, etal., J Biol Chem 2001 May 18;276(20):17395-404.
8. Cloning and characterization of a new human UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase, designated pp-GalNAc-T13, that is specifically expressed in neurons and synthesizes GalNAc alpha-serine/threonine antigen. Zhang Y, etal., J Biol Chem 2003 Jan 3;278(1):573-84. Epub 2002 Oct 28.
Additional References at PubMed
PMID:9153242   PMID:9918813   PMID:10037781   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11159923   PMID:11217851   PMID:11544199   PMID:12477932   PMID:12651884  
PMID:14610273   PMID:14681479   PMID:15486088   PMID:15489334   PMID:15582152   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16783646   PMID:17923703   PMID:17967808   PMID:18799693  
PMID:18973680   PMID:19880513   PMID:20498016   PMID:21267068   PMID:21349845   PMID:21873635   PMID:22183981   PMID:22544932   PMID:22643896   PMID:25107907   PMID:25615642   PMID:26676748  
PMID:27629416   PMID:27965094   PMID:28378742   PMID:30550785   PMID:31740596   PMID:31882545   PMID:34321999  


Genomics

Comparative Map Data
Galnt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391824,338,401 - 24,419,873 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1824,338,401 - 24,419,875 (+)EnsemblGRCm39 Ensembl
GRCm381824,205,321 - 24,286,816 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1824,205,344 - 24,286,818 (+)EnsemblGRCm38mm10GRCm38
MGSCv371824,363,845 - 24,445,317 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361824,348,451 - 24,428,655 (+)NCBIMGSCv36mm8
Celera1041,782,754 - 41,783,526 (-)NCBICelera
Cytogenetic Map18A2NCBI
cM Map1812.9NCBI
GALNT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381835,580,922 - 35,711,834 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1835,581,117 - 35,711,834 (+)EnsemblGRCh38hg38GRCh38
GRCh371833,160,886 - 33,291,798 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361831,488,594 - 31,545,792 (+)NCBINCBI36Build 36hg18NCBI36
Build 341831,488,593 - 31,545,792NCBI
Celera1830,042,460 - 30,099,740 (+)NCBICelera
Cytogenetic Map18q12.2NCBI
HuRef1830,094,210 - 30,151,471 (+)NCBIHuRef
CHM1_11833,161,549 - 33,218,839 (+)NCBICHM1_1
T2T-CHM13v2.01835,772,406 - 35,903,330 (+)NCBIT2T-CHM13v2.0
Galnt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81815,763,697 - 15,843,598 (+)NCBIGRCr8
mRatBN7.21815,489,015 - 15,568,849 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1815,489,020 - 15,568,245 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1815,704,035 - 15,746,775 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01816,486,744 - 16,529,484 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01815,783,163 - 15,825,912 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01816,141,062 - 16,187,271 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1816,146,447 - 16,185,496 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01815,902,801 - 15,947,610 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41816,013,372 - 16,052,099 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11816,040,017 - 16,078,745 (+)NCBI
Celera1815,467,563 - 15,506,269 (+)NCBICelera
Cytogenetic Map18p12NCBI
Galnt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540222,319,198 - 22,379,435 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540222,311,045 - 22,381,527 (+)NCBIChiLan1.0ChiLan1.0
GALNT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21752,969,024 - 53,099,913 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11838,662,476 - 38,792,713 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01828,872,609 - 28,958,517 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11832,460,262 - 32,517,154 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1832,460,262 - 32,517,154 (+)Ensemblpanpan1.1panPan2
GALNT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1754,390,144 - 54,512,908 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl754,391,917 - 54,453,885 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha753,814,786 - 53,935,557 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0754,360,522 - 54,481,421 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl754,362,519 - 54,426,510 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1754,043,282 - 54,164,066 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0754,066,799 - 54,187,385 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0754,359,554 - 54,480,423 (-)NCBIUU_Cfam_GSD_1.0
Galnt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494450,118,859 - 50,203,510 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365179,443,559 - 9,530,898 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365179,446,115 - 9,530,915 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALNT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6119,310,421 - 119,493,883 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16119,295,896 - 119,493,901 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26111,908,185 - 112,008,956 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GALNT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11845,080,786 - 45,156,776 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1845,077,944 - 45,139,410 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605019,577,174 - 19,652,880 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Galnt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247799,958,974 - 10,044,284 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247799,952,387 - 10,044,273 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Galnt1
2614 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2523
Count of miRNA genes:639
Interacting mature miRNAs:796
Transcripts:ENSMUST00000000430, ENSMUST00000164066, ENSMUST00000164998, ENSMUST00000169474, ENSMUST00000170191, ENSMUST00000170243, ENSMUST00000171583, ENSMUST00000178605
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558743Kcal1_mkilocalorie 1 (mouse)Not determined181901887453018992Mouse
11532716Sluc41c_msusceptibility to lung cancer 41c (mouse)182261991456620127Mouse
11532715Sluc41b_msusceptibility to lung cancer 41b (mouse)182261991456620127Mouse
12910787Pwbwq18_mpost-weaning body weight QTL 18 (mouse)181826552930570819Mouse
11532710Sluc41a_msusceptibility to lung cancer 41a (mouse)182261991456620127Mouse
11532709Sluc41_msusceptibility to lung cancer 41 (mouse)182095369457590708Mouse
1300638Im7_mimmunoregulatory 7 (mouse)Not determined181901887453018992Mouse
1558873Hrtfm7_mheart failure modifier 7 (mouse)Not determined18808696442087106Mouse
14928307Manh83_mmandible shape 83 (mouse)18126902168Mouse
12910805Pwbwq17_mpost-weaning body weight QTL 17 (mouse)181826552930570819Mouse
1300994Pvcan3_mprotection against vaginal candidiasis 3 (mouse)Not determined181619964050199776Mouse
1301570Sluc14_msusceptibility to lung cancer 14 (mouse)Not determined182261991456620127Mouse
13504732Cath6_mcarotid atherosclerosis 6 (mouse)181363712647637126Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961272643Mouse
1300877Adip8_madiposity 8 (mouse)Not determined182261991456620127Mouse
11354953Mom21_mmodifier of Min 21 (mouse)18128893823Mouse
12910819Ogrq6_moverall growth rate QTL 6 (mouse)181826552930570819Mouse
13207585Mwmlpt3_mMorris water maze latency to platform, training, 3 (mouse)18133547739Mouse
1301307Phospq1_mphospholipid QTL 1 (mouse)Not determined181813970452139859Mouse
13207589Mwmlpa3_mMorris water maze latency to platform, all, 3 (mouse)18133547739Mouse
1301950Otx2m1_morthodenticle homolog 2 (Drosophila) modifier 1 (mouse)Not determined182156868236187740Mouse
4142031Moen1_mmodifier of engrailed QTL 1 (mouse)Not determined182411556058115730Mouse
12801458Intmrm3_mintima/media ratio modifier 3 (mouse)18131720756Mouse
12801462Intim3_mintima modifier 3 (mouse)18131720756Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
13463476Hctq8_mhematocrit QTL 8 (mouse)182121758055217727Mouse
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060933072Mouse

Markers in Region
Galnt1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18B1UniSTS
cM Map18 UniSTS
RH124327  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381824,257,917 - 24,258,101UniSTSGRCm38
GRCm381910,900,187 - 10,900,770UniSTSGRCm38
MGSCv371824,416,418 - 24,416,602UniSTSGRCm37
MGSCv371910,974,677 - 10,975,260UniSTSGRCm37
Celera1911,593,178 - 11,593,761UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map18A2UniSTS
cM Map196.0UniSTS
RH124871  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381824,259,062 - 24,259,383UniSTSGRCm38
GRCm381910,905,339 - 10,905,477UniSTSGRCm38
MGSCv371910,979,829 - 10,979,967UniSTSGRCm37
MGSCv371824,417,563 - 24,417,884UniSTSGRCm37
Celera1911,598,331 - 11,598,469UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map18A2UniSTS
cM Map196.0UniSTS
RH125532  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381824,259,068 - 24,259,401UniSTSGRCm38
GRCm381910,905,345 - 10,905,495UniSTSGRCm38
MGSCv371910,979,835 - 10,979,985UniSTSGRCm37
MGSCv371824,417,569 - 24,417,902UniSTSGRCm37
Celera1911,598,337 - 11,598,487UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map18A2UniSTS
cM Map196.0UniSTS
D19Wsu55e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381910,905,254 - 10,905,503UniSTSGRCm38
GRCm381824,258,977 - 24,259,409UniSTSGRCm38
MGSCv371910,979,744 - 10,979,993UniSTSGRCm37
MGSCv371824,417,478 - 24,417,910UniSTSGRCm37
Celera1911,598,246 - 11,598,495UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map18A2UniSTS
cM Map196.0UniSTS
RH131344  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381824,257,770 - 24,259,089UniSTSGRCm38
MGSCv371824,416,271 - 24,417,590UniSTSGRCm37
Cytogenetic Map18B1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map19AUniSTS
cM Map196.0UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000000430   ⟹   ENSMUSP00000000430
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1824,338,401 - 24,419,875 (+)Ensembl
GRCm38.p6 Ensembl1824,205,344 - 24,286,818 (+)Ensembl
Ensembl Acc Id: ENSMUST00000164066   ⟹   ENSMUSP00000130238
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1824,379,143 - 24,404,726 (+)Ensembl
GRCm38.p6 Ensembl1824,246,086 - 24,271,669 (+)Ensembl
Ensembl Acc Id: ENSMUST00000164998   ⟹   ENSMUSP00000132411
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1824,339,016 - 24,387,687 (+)Ensembl
GRCm38.p6 Ensembl1824,205,959 - 24,254,630 (+)Ensembl
Ensembl Acc Id: ENSMUST00000169474
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1824,413,052 - 24,415,928 (+)Ensembl
GRCm38.p6 Ensembl1824,279,995 - 24,282,871 (+)Ensembl
Ensembl Acc Id: ENSMUST00000170191
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1824,413,090 - 24,416,248 (+)Ensembl
GRCm38.p6 Ensembl1824,280,033 - 24,283,191 (+)Ensembl
Ensembl Acc Id: ENSMUST00000170243   ⟹   ENSMUSP00000132142
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1824,338,824 - 24,419,867 (+)Ensembl
GRCm38.p6 Ensembl1824,205,767 - 24,286,810 (+)Ensembl
Ensembl Acc Id: ENSMUST00000171583   ⟹   ENSMUSP00000131755
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1824,371,380 - 24,400,724 (+)Ensembl
GRCm38.p6 Ensembl1824,238,323 - 24,267,667 (+)Ensembl
Ensembl Acc Id: ENSMUST00000178605   ⟹   ENSMUSP00000137427
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1824,365,654 - 24,419,867 (+)Ensembl
GRCm38.p6 Ensembl1824,232,597 - 24,286,810 (+)Ensembl
RefSeq Acc Id: NM_001160404   ⟹   NP_001153876
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391824,339,051 - 24,419,873 (+)NCBI
GRCm381824,205,994 - 24,286,816 (+)NCBI
MGSCv371824,363,845 - 24,445,317 (+)RGD
Celera1824,696,921 - 24,778,158 (+)ENTREZGENE
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001361200   ⟹   NP_001348129
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391824,339,016 - 24,419,873 (+)NCBI
GRCm381824,205,959 - 24,286,816 (+)NCBI
Sequence:
RefSeq Acc Id: NM_013814   ⟹   NP_038842
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391824,338,401 - 24,419,873 (+)NCBI
GRCm381824,205,344 - 24,286,816 (+)ENTREZGENE
MGSCv371824,363,845 - 24,445,317 (+)RGD
Celera1824,696,921 - 24,778,158 (+)ENTREZGENE
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_038842   ⟸   NM_013814
- UniProtKB: Q5BKS3 (UniProtKB/Swiss-Prot),   Q7TND1 (UniProtKB/Swiss-Prot),   O08912 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001153876   ⟸   NM_001160404
- UniProtKB: Q5BKS3 (UniProtKB/Swiss-Prot),   Q7TND1 (UniProtKB/Swiss-Prot),   O08912 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001348129   ⟸   NM_001361200
- UniProtKB: Q5BKS3 (UniProtKB/Swiss-Prot),   O08912 (UniProtKB/Swiss-Prot),   Q7TND1 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSMUSP00000132411   ⟸   ENSMUST00000164998
Ensembl Acc Id: ENSMUSP00000132142   ⟸   ENSMUST00000170243
Ensembl Acc Id: ENSMUSP00000130238   ⟸   ENSMUST00000164066
Ensembl Acc Id: ENSMUSP00000137427   ⟸   ENSMUST00000178605
Ensembl Acc Id: ENSMUSP00000131755   ⟸   ENSMUST00000171583
Ensembl Acc Id: ENSMUSP00000000430   ⟸   ENSMUST00000000430
Protein Domains
Ricin B lectin   Ricin B-type lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O08912-F1-model_v2 AlphaFold O08912 1-559 view protein structure

Promoters
RGD ID:13677260
Promoter ID:EPDNEW_M22779
Type:initiation region
Name:Galnt1_2
Description:Mus musculus polypeptide N-acetylgalactosaminyltransferase 1, transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22780  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381824,205,343 - 24,205,403EPDNEW
RGD ID:13677262
Promoter ID:EPDNEW_M22780
Type:initiation region
Name:Galnt1_1
Description:Mus musculus polypeptide N-acetylgalactosaminyltransferase 1, transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22779  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381824,205,959 - 24,206,019EPDNEW
RGD ID:6829240
Promoter ID:MM_KWN:24772
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Lung
Transcripts:NM_001160404,   NM_013814
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361824,363,361 - 24,364,452 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:894693 AgrOrtholog
Ensembl Genes ENSMUSG00000000420 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000000430 ENTREZGENE
  ENSMUST00000000430.14 UniProtKB/Swiss-Prot
  ENSMUST00000164066.2 UniProtKB/TrEMBL
  ENSMUST00000164998.8 UniProtKB/TrEMBL
  ENSMUST00000170243 ENTREZGENE
  ENSMUST00000170243.8 UniProtKB/Swiss-Prot
  ENSMUST00000171583.2 UniProtKB/TrEMBL
  ENSMUST00000178605.2 UniProtKB/Swiss-Prot
Gene3D-CATH 2.80.10.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ppGaNTase-T1 linker domain-like UniProtKB/TrEMBL
InterPro Galactosyl_T_C UniProtKB/TrEMBL
  GalNAc-T UniProtKB/Swiss-Prot
  Glyco_trans_2-like UniProtKB/Swiss-Prot
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ricin_B-like_lectins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14423 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:894693 ENTREZGENE
NCBI Gene 14423 ENTREZGENE
PANTHER N-ACETYLGALACTOSAMINYLTRANSFERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Glyco_transf_7C UniProtKB/TrEMBL
  Glycos_transf_2 UniProtKB/Swiss-Prot
  Ricin_B_lectin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Galnt1 PhenoGen
PROSITE RICIN_B_LECTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RICIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50370 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF53448 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E9PVK6_MOUSE UniProtKB/TrEMBL
  E9Q0U0_MOUSE UniProtKB/TrEMBL
  F6PYE1_MOUSE UniProtKB/TrEMBL
  GALT1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UFE4_MOUSE UniProtKB/TrEMBL
  Q5BKS3 ENTREZGENE
  Q7TND1 ENTREZGENE
UniProt Secondary Q5BKS3 UniProtKB/Swiss-Prot
  Q7TND1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-08-22 Galnt1  polypeptide N-acetylgalactosaminyltransferase 1    UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1  Symbol and/or name change 5135510 APPROVED