Galnt1 (polypeptide N-acetylgalactosaminyltransferase 1) - Rat Genome Database

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Gene: Galnt1 (polypeptide N-acetylgalactosaminyltransferase 1) Chinchilla lanigera
Analyze
Symbol: Galnt1
Name: polypeptide N-acetylgalactosaminyltransferase 1
RGD ID: 8937444
Description: ENCODES a protein that exhibits manganese ion binding (ortholog); polypeptide N-acetylgalactosaminyltransferase activity (ortholog); INVOLVED IN protein O-linked glycosylation (ortholog); protein O-linked glycosylation via serine (ortholog); protein O-linked glycosylation via threonine (ortholog); ASSOCIATED WITH genetic disease (ortholog); heart valve disease (ortholog); intellectual disability (ortholog); FOUND IN Golgi apparatus (ortholog); perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540222,319,198 - 22,379,435 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540222,311,045 - 22,381,527 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Galnt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540222,319,198 - 22,379,435 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540222,311,045 - 22,381,527 (+)NCBIChiLan1.0ChiLan1.0
GALNT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381835,580,922 - 35,711,834 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1835,581,117 - 35,711,834 (+)EnsemblGRCh38hg38GRCh38
GRCh371833,160,886 - 33,291,798 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361831,488,594 - 31,545,792 (+)NCBINCBI36Build 36hg18NCBI36
Build 341831,488,593 - 31,545,792NCBI
Celera1830,042,460 - 30,099,740 (+)NCBICelera
Cytogenetic Map18q12.2NCBI
HuRef1830,094,210 - 30,151,471 (+)NCBIHuRef
CHM1_11833,161,549 - 33,218,839 (+)NCBICHM1_1
T2T-CHM13v2.01835,772,406 - 35,903,330 (+)NCBIT2T-CHM13v2.0
Galnt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391824,338,401 - 24,419,873 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1824,338,401 - 24,419,875 (+)EnsemblGRCm39 Ensembl
GRCm381824,205,321 - 24,286,816 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1824,205,344 - 24,286,818 (+)EnsemblGRCm38mm10GRCm38
MGSCv371824,363,845 - 24,445,317 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361824,348,451 - 24,428,655 (+)NCBIMGSCv36mm8
Celera1041,782,754 - 41,783,526 (-)NCBICelera
Cytogenetic Map18A2NCBI
cM Map1812.9NCBI
Galnt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81815,763,697 - 15,843,598 (+)NCBIGRCr8
mRatBN7.21815,489,015 - 15,568,849 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1815,489,020 - 15,568,245 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1815,704,035 - 15,746,775 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01816,486,744 - 16,529,484 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01815,783,163 - 15,825,912 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01816,141,062 - 16,187,271 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1816,146,447 - 16,185,496 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01815,902,801 - 15,947,610 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41816,013,372 - 16,052,099 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11816,040,017 - 16,078,745 (+)NCBI
Celera1815,467,563 - 15,506,269 (+)NCBICelera
Cytogenetic Map18p12NCBI
GALNT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21752,969,024 - 53,099,913 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11838,662,476 - 38,792,713 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01828,872,609 - 28,958,517 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11832,460,262 - 32,517,154 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1832,460,262 - 32,517,154 (+)Ensemblpanpan1.1panPan2
GALNT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1754,390,144 - 54,512,908 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl754,391,917 - 54,453,885 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha753,814,786 - 53,935,557 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0754,360,522 - 54,481,421 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl754,362,519 - 54,426,510 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1754,043,282 - 54,164,066 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0754,066,799 - 54,187,385 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0754,359,554 - 54,480,423 (-)NCBIUU_Cfam_GSD_1.0
Galnt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494450,118,859 - 50,203,510 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365179,443,559 - 9,530,898 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365179,446,115 - 9,530,915 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALNT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6119,310,421 - 119,493,883 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16119,295,896 - 119,493,901 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26111,908,185 - 112,008,956 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GALNT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11845,080,786 - 45,156,776 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1845,077,944 - 45,139,410 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605019,577,174 - 19,652,880 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Galnt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247799,958,974 - 10,044,284 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247799,952,387 - 10,044,273 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000020182   ⟹   ENSCLAP00000019989
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540222,319,198 - 22,379,435 (+)Ensembl
RefSeq Acc Id: XM_005415409   ⟹   XP_005415466
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540222,311,045 - 22,381,527 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005415466 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000019989
  ENSCLAP00000019989.1
Reference Protein Sequences
RefSeq Acc Id: XP_005415466   ⟸   XM_005415409
- UniProtKB: A0A8C2VUU2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000019989   ⟸   ENSCLAT00000020182
Protein Domains
Ricin B lectin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013698 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000020182 ENTREZGENE
  ENSCLAT00000020182.1 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
InterPro GalNAc-T UniProtKB/TrEMBL
  Glyco_trans_2-like UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
  Ricin_B-like_lectins UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
NCBI Gene Galnt1 ENTREZGENE
PANTHER N-ACETYLGALACTOSAMINYLTRANSFERASE UniProtKB/TrEMBL
  POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 1 UniProtKB/TrEMBL
Pfam Glycos_transf_2 UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
PROSITE RICIN_B_LECTIN UniProtKB/TrEMBL
SMART RICIN UniProtKB/TrEMBL
Superfamily-SCOP SSF50370 UniProtKB/TrEMBL
  SSF53448 UniProtKB/TrEMBL
UniProt A0A8C2VUU2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Galnt1  polypeptide N-acetylgalactosaminyltransferase 1    UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)  Symbol and/or name change 5135510 APPROVED