Ereg (epiregulin) - Rat Genome Database

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Gene: Ereg (epiregulin) Mus musculus
Analyze
Symbol: Ereg
Name: epiregulin
RGD ID: 730899
MGI Page MGI
Description: Enables epidermal growth factor receptor binding activity; receptor ligand activity; and transmembrane receptor protein tyrosine kinase activator activity. Involved in several processes, including epidermal growth factor receptor signaling pathway; positive regulation of macromolecule metabolic process; and positive regulation of mitotic nuclear division. Located in extracellular space. Is expressed in several structures, including extraembryonic component; heart; lung; ovary; and skin. Human ortholog(s) of this gene implicated in extrapulmonary tuberculosis; pulmonary tuberculosis; and tuberculosis. Orthologous to human EREG (epiregulin).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: E; EPR; MGC36144; proepiregulin
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39591,222,476 - 91,241,508 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl591,222,481 - 91,241,505 (+)EnsemblGRCm39 Ensembl
GRCm38591,074,617 - 91,093,649 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl591,074,622 - 91,093,646 (+)EnsemblGRCm38mm10GRCm38
MGSCv37591,503,643 - 91,522,675 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36592,149,822 - 92,168,846 (+)NCBIMGSCv36mm8
Celera589,212,781 - 89,230,978 (+)NCBICelera
Cytogenetic Map5E1NCBI
cM Map544.78NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
EregMousecholesteatoma  ISOEREG (Homo sapiens)39457690mRNA:increased expression:external acoustic meatus (human)RGD 
EregMouseExperimental Colitis  IEP 39457688protein:increased expression:colonic mucosa (mouse)RGD 
EregMouseextrapulmonary tuberculosis susceptibilityISOEREG (Homo sapiens)39457687DNA:SNP:exon 4: (rs2367707) (human)RGD 
EregMousepulmonary tuberculosis susceptibilityISOEREG (Homo sapiens)39457687DNA:SNP:exon 4: (rs2367707) (human)RGD 
EregMousetuberculosis susceptibilityISOEREG (Homo sapiens)39457686DNA:SNP:intron: (rs7675690) (human)RGD 
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
EregMouseerythropoietic protoporphyria  ISOEREG (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19267999
EregMousehepatocellular carcinoma  ISOEREG (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:35776891
EregMouseOvarian Neoplasms  ISOEREG (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:15313392

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Original Reference(s)
EregMouse1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane decreases expressionISOEreg (Rattus norvegicus)6480464o and p'-DDT results in decreased expression of EREG mRNACTDPMID:23209616
EregMouse1,2,4-trimethylbenzene increases expressionISOEreg (Rattus norvegicus)6480464pseudocumene results in increased expression of EREG proteinCTDPMID:17337753
EregMouse1,2-dimethylhydrazine multiple interactionsISOEreg (Rattus norvegicus)6480464[APC protein affects the susceptibility to 1 and 2-Dimethylhydrazine] which results in increased expression of EREG mRNACTDPMID:27840820
EregMouse1,2-dimethylhydrazine increases expressionEXP 64804641 and 2-Dimethylhydrazine results in increased expression of EREG mRNACTDPMID:22206623
EregMouse1,8-Dinitropyrene increases expressionISOEREG (Homo sapiens)64804641 and 8-dinitropyrene results in increased expression of EREG mRNACTDPMID:21887816
EregMouse1-nitropyrene increases expressionISOEREG (Homo sapiens)64804641-nitropyrene results in increased expression of EREG mRNACTDPMID:21887816
EregMouse15-acetyldeoxynivalenol increases expressionISOEREG (Homo sapiens)648046415-acetyldeoxynivalenol results in increased expression of EREG mRNACTDPMID:23792671
EregMouse17beta-estradiol increases expressionISOEREG (Homo sapiens)6480464Estradiol results in increased expression of EREG mRNACTDPMID:20106945 and PMID:21632981
EregMouse17beta-estradiol multiple interactionsISOEREG (Homo sapiens)6480464[Estradiol co-treated with TGFB1 protein] results in decreased expression of EREG mRNACTDPMID:30165855
EregMouse17beta-estradiol decreases expressionISOEreg (Rattus norvegicus)6480464Estradiol results in decreased expression of EREG mRNACTDPMID:23209616
EregMouse17beta-estradiol multiple interactionsISOEreg (Rattus norvegicus)6480464fulvestrant inhibits the reaction [Estradiol results in decreased expression of EREG mRNA]CTDPMID:23209616
EregMouse2,3,4,7,8-Pentachlorodibenzofuran increases expressionISOEreg (Rattus norvegicus)64804642 more ...CTDPMID:24046277
EregMouse2,3,7,8-tetrachlorodibenzodioxine multiple interactionsEXP 6480464[Tetrachlorodibenzodioxin results in increased activity of AHR protein] which results in increased expression of EREG mRNA more ...CTDPMID:16192470 and PMID:25975270
EregMouse2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of EREG mRNACTDPMID:37854252
EregMouse2,3,7,8-tetrachlorodibenzodioxine increases secretionISOEREG (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased secretion of EREG proteinCTDPMID:23625689 and PMID:27117977
EregMouse2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of EREG mRNACTDPMID:16962184 and PMID:26377647
EregMouse2,3,7,8-tetrachlorodibenzodioxine increases expressionISOEREG (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of EREG mRNACTDPMID:16704738 more ...
EregMouse2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOEREG (Homo sapiens)64804642-methyl-2H-pyrazole-3-carboxylic acid (2-methyl-4-o-tolylazophenyl)amide inhibits the reaction [[Tetrachlorodibenzodioxin co-treated with IL1B protein] results in increased expression of EREG mRNA] more ...CTDPMID:23625689 and PMID:27117977
EregMouse2,3,7,8-tetrachlorodibenzodioxine increases expressionISOEreg (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of EREG mRNACTDPMID:20558275 more ...
EregMouse2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of EREG mRNACTDPMID:16192470 more ...

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Biological Process
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Object Symbol
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Original Reference(s)
EregMouseanatomical structure morphogenesis involved_inTAS 2290270 PMID:9337852UniProtPMID:9337852
EregMouseangiogenesis involved_inIEAUniProtKB-KW:KW-00372290270 UniProtGO_REF:0000043
EregMouseanimal organ morphogenesis involved_inTAS 2290270 PMID:9337852UniProtPMID:9337852
EregMousecell-cell signaling involved_inISSUniProtKB:O149442290270 UniProtGO_REF:0000024
EregMousecell-cell signaling involved_inISOUniProtKB:O149442290270 GO_CentralGO_REF:0000119
EregMousecytokine-mediated signaling pathway involved_inISSUniProtKB:O149442290270 PMID:9419975UniProtPMID:9419975
EregMousecytokine-mediated signaling pathway involved_inISOUniProtKB:O149442290270 GO_CentralGO_REF:0000119
EregMouseepidermal growth factor receptor signaling pathway involved_inISOEreg (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
EregMouseepidermal growth factor receptor signaling pathway involved_inIDA 2290270 PMID:7706296MGIPMID:7706296
EregMouseepidermal growth factor receptor signaling pathway involved_inISOUniProtKB:O149442290270 PMID:28783046 and PMID:9556621MGIPMID:28783046 and PMID:9556621
EregMouseepidermal growth factor receptor signaling pathway involved_inIGIMGI:952942290270 PMID:28783046MGIPMID:28783046
EregMouseepidermal growth factor receptor signaling pathway involved_inIBAPANTHER:PTN001643577 more ...2290270 GO_CentralGO_REF:0000033
EregMouseepidermal growth factor receptor signaling pathway involved_inISSUniProtKB:Q9Z0L52290270 PMID:9990076UniProtPMID:9990076
EregMouseERBB2-EGFR signaling pathway involved_inISOUniProtKB:O149442290270 PMID:9556621MGIPMID:9556621
EregMouseERBB2-ERBB4 signaling pathway involved_inISOUniProtKB:O149442290270 PMID:9556621MGIPMID:9556621
EregMouseERBB4-ERBB4 signaling pathway involved_inISOUniProtKB:O149442290270 PMID:9556621MGIPMID:9556621
EregMousefemale meiotic nuclear division involved_inISSUniProtKB:Q9Z0L52290270 UniProtGO_REF:0000024
EregMousefemale meiotic nuclear division involved_inISOEreg (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
EregMousekeratinocyte proliferation involved_inISOUniProtKB:O149442290270 GO_CentralGO_REF:0000119
EregMousekeratinocyte proliferation involved_inISSUniProtKB:O149442290270 UniProtGO_REF:0000024
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Cellular Component
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Original Reference(s)
EregMouseextracellular space located_inIDA 2290270 PMID:9337852UniProtPMID:9337852
EregMouseextracellular space is_active_inIGIMGI:952942290270 PMID:28783046MGIPMID:28783046
EregMouseextracellular space located_inISOUniProtKB:O149442290270 GO_CentralGO_REF:0000119
EregMouseextracellular space located_inISSUniProtKB:O149442290270 UniProtGO_REF:0000024
EregMouseextracellular space is_active_inISOUniProtKB:O149442290270 PMID:28783046 and PMID:9556621MGIPMID:28783046 and PMID:9556621
EregMouseextracellular space is_active_inIBAPANTHER:PTN000077690 more ...2290270 GO_CentralGO_REF:0000033
EregMouseextracellular space  ISOEreg (Rattus norvegicus)9068941 RGDPMID:14570897 and REF_RGD_ID:2316285
EregMouseextracellular space located_inISOEreg (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
EregMouseplasma membrane located_inIEAUniProtKB-SubCell:SL-00392290270 UniProtGO_REF:0000044
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Molecular Function
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Object Symbol
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Original Reference(s)
EregMouseepidermal growth factor receptor binding enablesIDA 2290270 PMID:7706296UniProtPMID:7706296
EregMouseepidermal growth factor receptor binding enablesIBAPANTHER:PTN000077690 more ...2290270 GO_CentralGO_REF:0000033
EregMousegrowth factor activity  ISOEreg (Rattus norvegicus)9068941 RGDPMID:9990076 and REF_RGD_ID:632743
EregMousegrowth factor activity enablesISOEreg (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
EregMousegrowth factor activity enablesIEAUniProtKB:Q9Z0L5 and ensembl:ENSRNOP000000037162290270 EnsemblGO_REF:0000107
EregMousegrowth factor activity enablesIBAPANTHER:PTN000077690 more ...2290270 GO_CentralGO_REF:0000033
EregMouseprotein binding enablesISOUniProtKB:P00533 and UniProtKB:Q153039068941 PMID:9419975UniProtPMID:9419975
EregMouseprotein binding enablesISOUniProtKB:Q07325 more ...9068941 PMID:32296183IntActPMID:32296183
EregMouseprotein binding enablesISOUniProtKB:P005339068941 PMID:28988771IntActPMID:28988771
EregMousereceptor ligand activity enablesIGIMGI:952942290270 PMID:28783046MGIPMID:28783046
EregMousereceptor ligand activity enablesISOUniProtKB:O149442290270 PMID:28783046 and PMID:9556621MGIPMID:28783046 and PMID:9556621
EregMousereceptor ligand activity enablesIDA 2290270 PMID:7706296MGIPMID:7706296
EregMousetransmembrane receptor protein tyrosine kinase activator activity enablesISOUniProtKB:O149442290270 PMID:28783046 and PMID:9556621MGIPMID:28783046 and PMID:9556621
EregMousetransmembrane receptor protein tyrosine kinase activator activity enablesIGIMGI:952942290270 PMID:28783046MGIPMID:28783046
EregMousetransmembrane receptor protein tyrosine kinase activator activity enablesIDA 2290270 PMID:7706296MGIPMID:7706296
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RGD Manual Annotations


  
Object Symbol
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Reference
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Original Reference(s)
EregMouseepidermal growth factor/neuregulin signaling pathway   ISOEREG (Homo sapiens)2317963 RGD 

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
EregMouseepidermal growth factor/neuregulin signaling pathway   IEA 6907045 KEGGmmu:04012

Imported Annotations - PID (archival)

Object Symbol
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Term
Qualifier
Evidence
With
Reference
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Source
Original Reference(s)
EregMouseepidermal growth factor/neuregulin signaling pathway   ISOEREG (Homo sapiens)6484113 PIDPID:200159

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#
Reference Title
Reference Citation
1. Polymorphism in the EREG gene confers susceptibility to tuberculosis. Cao W, etal., BMC Med Genet. 2019 Jan 11;20(1):7. doi: 10.1186/s12881-018-0729-z.
2. Toll-like receptor 4 differentially regulates epidermal growth factor-related growth factors in response to intestinal mucosal injury. Hsu D, etal., Lab Invest. 2010 Sep;90(9):1295-305. doi: 10.1038/labinvest.2010.100. Epub 2010 May 24.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Autocrine, paracrine and juxtacrine signaling by EGFR ligands. Singh AB and Harris RC, Cell Signal. 2005 Oct;17(10):1183-93.
13. Expression of the epidermal growth factor system in human middle ear cholesteatoma. Thorup MB, etal., Acta Otolaryngol. 2014 Feb;134(2):124-34. doi: 10.3109/00016489.2013.847282. Epub 2013 Nov 21.
14. Epiregulin (EREG) variation is associated with susceptibility to tuberculosis. Thuong NT, etal., Genes Immun. 2012 Apr;13(3):275-81. doi: 10.1038/gene.2011.83. Epub 2011 Dec 15.
15. Intestine-Specific Mttp Deletion Increases the Severity of Experimental Colitis and Leads to Greater Tumor Burden in a Model of Colitis Associated Cancer. Xie Y, etal., PLoS One. 2013 Jun 21;8(6):e67819. doi: 10.1371/journal.pone.0067819. Print 2013.
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PMID:7706296   PMID:8549764   PMID:9337852   PMID:9344537   PMID:9419975   PMID:9556621   PMID:9990076   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12573256  
PMID:14726596   PMID:15365177   PMID:15456865   PMID:15489334   PMID:15651060   PMID:16141072   PMID:16141073   PMID:16182244   PMID:16338791   PMID:16857964   PMID:17194751   PMID:18069687  
PMID:19267999   PMID:19321658   PMID:19330024   PMID:19884258   PMID:21041656   PMID:21123517   PMID:21233255   PMID:21237132   PMID:21512138   PMID:21738714   PMID:21873635   PMID:21946538  
PMID:22427548   PMID:22682244   PMID:22951731   PMID:23549083   PMID:24043783   PMID:24488930   PMID:24812054   PMID:24825892   PMID:24952961   PMID:26627827   PMID:26764350   PMID:26894620  
PMID:28360101   PMID:28472347   PMID:28492365   PMID:28783046   PMID:28898113   PMID:29129684   PMID:30400011   PMID:31761787   PMID:31889361   PMID:32700456   PMID:34292881   PMID:36915679  
PMID:37070602   PMID:38514807  



Ereg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39591,222,476 - 91,241,508 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl591,222,481 - 91,241,505 (+)EnsemblGRCm39 Ensembl
GRCm38591,074,617 - 91,093,649 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl591,074,622 - 91,093,646 (+)EnsemblGRCm38mm10GRCm38
MGSCv37591,503,643 - 91,522,675 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36592,149,822 - 92,168,846 (+)NCBIMGSCv36mm8
Celera589,212,781 - 89,230,978 (+)NCBICelera
Cytogenetic Map5E1NCBI
cM Map544.78NCBI
EREG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38474,365,145 - 74,388,749 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl474,365,145 - 74,388,749 (+)EnsemblGRCh38hg38GRCh38
GRCh37475,230,862 - 75,254,466 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36475,449,724 - 75,473,341 (+)NCBINCBI36Build 36hg18NCBI36
Build 34475,595,894 - 75,619,512NCBI
Celera472,591,116 - 72,614,730 (+)NCBICelera
Cytogenetic Map4q13.3NCBI
HuRef471,041,824 - 71,065,447 (+)NCBIHuRef
CHM1_1475,266,712 - 75,290,347 (+)NCBICHM1_1
T2T-CHM13v2.0477,708,788 - 77,732,398 (+)NCBIT2T-CHM13v2.0
Ereg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81417,311,485 - 17,325,260 (-)NCBIGRCr8
mRatBN7.21417,027,287 - 17,041,062 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1417,027,287 - 17,041,062 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1417,029,016 - 17,042,901 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01418,347,942 - 18,361,825 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01417,040,063 - 17,053,944 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01418,577,620 - 18,591,395 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1418,576,355 - 18,591,394 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01418,486,956 - 18,500,731 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41418,521,069 - 18,534,844 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11418,521,068 - 18,534,844 (-)NCBI
Celera1416,405,096 - 16,418,803 (-)NCBICelera
Cytogenetic Map14p22NCBI
Ereg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955474612,440 - 627,606 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955474612,440 - 627,606 (+)NCBIChiLan1.0ChiLan1.0
EREG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2355,672,126 - 55,720,786 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1455,861,183 - 55,909,825 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0449,806,505 - 49,827,961 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1455,641,014 - 55,660,568 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl455,641,014 - 55,660,568 (-)Ensemblpanpan1.1panPan2
EREG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11362,857,325 - 62,877,831 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1362,856,709 - 62,877,760 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1362,545,018 - 62,568,011 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01363,687,189 - 63,710,239 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1363,687,115 - 63,707,828 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11363,301,985 - 63,325,016 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01362,783,802 - 62,806,817 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01363,926,759 - 63,949,788 (+)NCBIUU_Cfam_GSD_1.0
Ereg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528512,874,664 - 12,893,710 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365981,328,803 - 1,344,360 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365981,328,803 - 1,336,141 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EREG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl870,351,311 - 70,372,569 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1870,351,316 - 70,372,530 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2874,502,143 - 74,521,363 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EREG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1722,898,998 - 22,924,922 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl722,901,862 - 22,920,678 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660371,191,580 - 1,214,724 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ereg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247301,339,518 - 1,353,429 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247301,339,017 - 1,353,869 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Ereg
1035 total Variants

Predicted Target Of
Summary Value
Count of predictions:1005
Count of miRNA genes:558
Interacting mature miRNAs:686
Transcripts:ENSMUST00000031324
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 57 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56265056896650688Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
12910784Pwgrq15_mpost-weaning growth rate QTL 15 (mouse)57717582397658215Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563705442104387065Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse

1 to 10 of 57 rows
Ereg  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5E1UniSTS
cM Map5 UniSTS







Ensembl Acc Id: ENSMUST00000031324   ⟹   ENSMUSP00000031324
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl591,222,481 - 91,241,505 (+)Ensembl
GRCm38.p6 Ensembl591,074,622 - 91,093,646 (+)Ensembl
RefSeq Acc Id: NM_007950   ⟹   NP_031976
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39591,222,476 - 91,241,508 (+)NCBI
GRCm38591,074,617 - 91,093,649 (+)ENTREZGENE
MGSCv37591,503,643 - 91,522,675 (+)RGD
Celera589,212,781 - 89,230,978 (+)RGD
cM Map5 ENTREZGENE
Sequence:
Protein RefSeqs NP_031976 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH27838 (Get FASTA)   NCBI Sequence Viewer  
  BAA06446 (Get FASTA)   NCBI Sequence Viewer  
  EDL05296 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000031324
  ENSMUSP00000031324.5
GenBank Protein Q61521 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_031976   ⟸   NM_007950
- Peptide Label: preproprotein
- UniProtKB: Q7M0A8 (UniProtKB/Swiss-Prot),   Q61521 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000031324   ⟸   ENSMUST00000031324
EGF-like

Name Modeler Protein Id AA Range Protein Structure
AF-Q61521-F1-model_v2 AlphaFold Q61521 1-162 view protein structure

RGD ID:6887136
Promoter ID:EPDNEW_M7019
Type:multiple initiation site
Name:Ereg_1
Description:Mus musculus epiregulin , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38591,074,622 - 91,074,682EPDNEW
RGD ID:6837467
Promoter ID:MM_KWN:42854
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B4,   MEF_B6
Transcripts:NM_007950
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36591,503,051 - 91,503,722 (+)MPROMDB
RGD ID:6837015
Promoter ID:MM_KWN:42855
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   MEF_B4
Transcripts:UC008YBR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36591,503,509 - 91,504,009 (-)MPROMDB


1 to 20 of 20 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000029377 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000031324 ENTREZGENE
  ENSMUST00000031324.6 UniProtKB/Swiss-Prot
Gene3D-CATH Laminin UniProtKB/Swiss-Prot
InterPro EGF-like_dom UniProtKB/Swiss-Prot
KEGG Report mmu:13874 UniProtKB/Swiss-Prot
MGD MGI:107508 ENTREZGENE
NCBI Gene 13874 ENTREZGENE
PANTHER PROEPIREGULIN UniProtKB/Swiss-Prot
  PTHR10740 UniProtKB/Swiss-Prot
PharmGKB EREG RGD
PhenoGen Ereg PhenoGen
PRINTS EGFTGF UniProtKB/Swiss-Prot
PROSITE EGF_1 UniProtKB/Swiss-Prot
  EGF_2 UniProtKB/Swiss-Prot
  EGF_3 UniProtKB/Swiss-Prot
Superfamily-SCOP EGF/Laminin UniProtKB/Swiss-Prot
UniProt EREG_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q7M0A8 ENTREZGENE
UniProt Secondary Q7M0A8 UniProtKB/Swiss-Prot
1 to 20 of 20 rows