Ddx24 (DEAD-box helicase 24) - Rat Genome Database

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Gene: Ddx24 (DEAD-box helicase 24) Rattus norvegicus
Analyze
Symbol: Ddx24
Name: DEAD-box helicase 24
RGD ID: 727929
Description: Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Predicted to be active in nucleolus. Orthologous to human DDX24 (DEAD-box helicase 24); PARTICIPATES IN ribosome biogenesis pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ATP-dependent RNA helicase DDX24; ATP-dependent RNA helicase DDX24-like; DEAD (Asp-Glu-Ala-Asp) box helicase 24; DEAD (Asp-Glu-Ala-Asp) box polypeptide 24; LOC100909476
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86128,329,554 - 128,346,818 (-)NCBIGRCr8
mRatBN7.26122,564,767 - 122,582,032 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6122,564,767 - 122,581,927 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6122,705,614 - 122,722,897 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06123,000,876 - 123,018,159 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06122,335,418 - 122,352,763 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06127,302,201 - 127,319,382 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6127,302,201 - 127,319,362 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl6128,996,616 - 129,001,614 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06136,522,732 - 136,539,906 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46127,699,436 - 127,716,597 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16127,703,182 - 127,720,344 (-)NCBI
Celera6120,045,460 - 120,062,621 (-)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ddx24Ratachondrogenesis type IA  ISODDX24 (Homo sapiens)8554872ClinVar Annotator: match by term: Achondrogenesis and type IAClinVarPMID:28492532
Ddx24RatDICER1 syndrome  ISODDX24 (Homo sapiens)8554872ClinVar Annotator: match by term: DICER1 syndromeClinVarPMID:26545620 more ...
Ddx24Ratpleuropulmonary blastoma  ISODDX24 (Homo sapiens)8554872ClinVar Annotator: match by term: DICER1-related pleuropulmonary blastoma cancer predisposition syndromeClinVarPMID:26545620 more ...

1 to 20 of 77 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ddx24Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of DDX24 mRNA]CTDPMID:31150632
Ddx24Rat(1->4)-beta-D-glucan multiple interactionsISODdx24 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of DDX24 mRNACTDPMID:36331819
Ddx24Rat1,2-dimethylhydrazine increases expressionISODdx24 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of DDX24 mRNACTDPMID:22206623
Ddx24Rat17alpha-ethynylestradiol increases expressionISODdx24 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of DDX24 mRNACTDPMID:17942748
Ddx24Rat17alpha-ethynylestradiol multiple interactionsISODdx24 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of DDX24 mRNACTDPMID:17942748
Ddx24Rat17beta-estradiol affects expressionISODdx24 (Mus musculus)6480464Estradiol affects the expression of DDX24 mRNACTDPMID:15598610
Ddx24Rat17beta-estradiol increases expressionISODDX24 (Homo sapiens)6480464Estradiol results in increased expression of DDX24 mRNACTDPMID:31614463
Ddx24Rat17beta-estradiol decreases expressionISODdx24 (Mus musculus)6480464Estradiol results in decreased expression of DDX24 mRNACTDPMID:39298647
Ddx24Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISODdx24 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of DDX24 mRNA and Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to DDX24 promoter]CTDPMID:17942748 and PMID:19654925
Ddx24Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of DDX24 mRNACTDPMID:33387578
Ddx24Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of DDX24 mRNACTDPMID:34747641
Ddx24Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISODDX24 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of DDX24 mRNACTDPMID:22903824
Ddx24Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISODdx24 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of DDX24 mRNACTDPMID:21570461
Ddx24Rat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of DDX24 mRNACTDPMID:21346803
Ddx24Rat2,6-dinitrotoluene affects expressionEXP 64804642 and 6-dinitrotoluene affects the expression of DDX24 mRNACTDPMID:21346803
Ddx24Rat2-methylcholine affects expressionISODDX24 (Homo sapiens)6480464beta-methylcholine affects the expression of DDX24 mRNACTDPMID:21179406
Ddx24Rat3,4-methylenedioxymethamphetamine decreases expressionISODdx24 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of DDX24 mRNACTDPMID:26251327
Ddx24Rat4,4'-sulfonyldiphenol increases expressionISODdx24 (Mus musculus)6480464bisphenol S results in increased expression of DDX24 mRNACTDPMID:39298647
Ddx24Rat4-amino-2,6-dinitrotoluene affects expressionEXP 64804644-amino-2 and 6-dinitrotoluene affects the expression of DDX24 mRNACTDPMID:21346803
Ddx24Ratarachidonic acid decreases expressionISODDX24 (Homo sapiens)6480464Arachidonic Acid results in decreased expression of DDX24 mRNACTDPMID:16704987

1 to 20 of 77 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ddx24Ratbiological_process  ND 159840701/2016: no relevant rat dataRGD 

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ddx24Ratnucleolus located_inISODDX24 (Homo sapiens)1624291 RGDGO_REF:0000054
Ddx24Ratnucleolus is_active_inIBAPANTHER:PTN002772908 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ddx24Ratnucleolus located_inIEAUniProtKB:Q9GZR7 and ensembl:ENSP000004814951600115GO_REF:0000107EnsemblGO_REF:0000107

Molecular Function
1 to 12 of 12 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ddx24RatATP binding enablesIEAUniProtKB-KW:KW-00671600115GO_REF:0000043UniProtGO_REF:0000043
Ddx24RatATP binding enablesIEAInterPro:IPR0115451600115GO_REF:0000002InterProGO_REF:0000002
Ddx24RatATP binding enablesIEAUniRule:UR0009957791600115GO_REF:0000104UniProtGO_REF:0000104
Ddx24Rathelicase activity enablesIEAUniProtKB-KW:KW-03471600115GO_REF:0000043UniProtGO_REF:0000043
Ddx24Rathydrolase activity enablesIEAUniProtKB-KW:KW-03781600115GO_REF:0000043UniProtGO_REF:0000043
Ddx24Ratnucleic acid binding enablesIEAInterPro:IPR0115451600115GO_REF:0000002InterProGO_REF:0000002
Ddx24Ratnucleotide binding enablesIEAUniProtKB-KW:KW-05471600115GO_REF:0000043UniProtGO_REF:0000043
Ddx24Ratprotein binding enablesISODDX24 (Homo sapiens)1624291UniProtKB:P68400 more ...RGDPMID:22113938 more ...
Ddx24RatRNA binding enablesIEAUniRule:UR0009957791600115GO_REF:0000104UniProtGO_REF:0000104
Ddx24RatRNA binding enablesIEAUniProtKB-KW:KW-06941600115GO_REF:0000043UniProtGO_REF:0000043
Ddx24RatRNA helicase activity enablesIEAEC:3.6.4.131600115GO_REF:0000003UniProtGO_REF:0000003
Ddx24RatRNA helicase activity enablesIEAInterPro:IPR0140141600115GO_REF:0000002InterProGO_REF:0000002
1 to 12 of 12 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ddx24Ratribosome biogenesis pathway   ISODDX24 (Homo sapiens)10002738 RGD 

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. DExD/H-box RNA helicases in ribosome biogenesis. Martin R, etal., RNA Biol. 2013 Jan;10(1):4-18. doi: 10.4161/rna.21879. Epub 2012 Aug 24.
4. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
PMID:12477932   PMID:19946888   PMID:22658674   PMID:22681889  



Ddx24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86128,329,554 - 128,346,818 (-)NCBIGRCr8
mRatBN7.26122,564,767 - 122,582,032 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6122,564,767 - 122,581,927 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6122,705,614 - 122,722,897 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06123,000,876 - 123,018,159 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06122,335,418 - 122,352,763 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06127,302,201 - 127,319,382 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6127,302,201 - 127,319,362 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl6128,996,616 - 129,001,614 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06136,522,732 - 136,539,906 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46127,699,436 - 127,716,597 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16127,703,182 - 127,720,344 (-)NCBI
Celera6120,045,460 - 120,062,621 (-)NCBICelera
Cytogenetic Map6q32NCBI
DDX24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381494,048,287 - 94,081,202 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1494,048,287 - 94,081,202 (-)EnsemblGRCh38hg38GRCh38
GRCh371494,514,633 - 94,547,548 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361493,587,021 - 93,617,311 (-)NCBINCBI36Build 36hg18NCBI36
Build 341493,587,021 - 93,617,311NCBI
Celera1474,571,013 - 74,601,331 (-)NCBICelera
Cytogenetic Map14q32.12NCBI
HuRef1474,697,258 - 74,727,325 (-)NCBIHuRef
CHM1_11494,455,281 - 94,485,555 (-)NCBICHM1_1
T2T-CHM13v2.01488,275,602 - 88,308,519 (-)NCBIT2T-CHM13v2.0
Ddx24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912103,374,235 - 103,392,106 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12103,374,241 - 103,392,089 (-)EnsemblGRCm39 Ensembl
GRCm3812103,407,976 - 103,425,847 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12103,407,982 - 103,425,830 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712104,646,186 - 104,664,077 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612103,809,033 - 103,826,830 (-)NCBIMGSCv36mm8
Celera12104,624,733 - 104,642,624 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1252.92NCBI
Ddx24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543816,100,594 - 16,114,657 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543816,100,345 - 16,116,377 (-)NCBIChiLan1.0ChiLan1.0
DDX24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21595,208,308 - 95,241,312 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11494,424,813 - 94,457,787 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01474,683,068 - 74,713,394 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11494,016,438 - 94,046,635 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1494,016,438 - 94,046,635 (-)Ensemblpanpan1.1panPan2
DDX24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1863,115,740 - 63,136,402 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl863,115,746 - 63,165,905 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha862,692,199 - 62,712,845 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0863,386,682 - 63,407,257 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl863,386,683 - 63,406,313 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1863,064,220 - 63,084,820 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0863,115,645 - 63,136,269 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0863,445,847 - 63,466,503 (-)NCBIUU_Cfam_GSD_1.0
Ddx24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864011,534,965 - 11,553,604 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367331,913,437 - 1,932,869 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367331,913,439 - 1,932,027 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DDX24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7115,328,121 - 115,352,929 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17115,328,122 - 115,347,355 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27122,186,509 - 122,207,174 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DDX24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12471,808,721 - 71,838,268 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2471,808,995 - 71,838,262 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605359,048,089 - 59,078,195 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ddx24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473410,405,656 - 10,422,101 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Ddx24
102 total Variants

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:38
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000012256
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 26 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6104085867128713626Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat

1 to 10 of 26 rows
RH143701  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26122,580,353 - 122,580,454 (+)MAPPERmRatBN7.2
Rnor_6.06127,317,788 - 127,317,888NCBIRnor6.0
Rnor_5.06136,538,319 - 136,538,419UniSTSRnor5.0
RGSC_v3.46127,715,023 - 127,715,123UniSTSRGSC3.4
Celera6120,061,047 - 120,061,147UniSTS
RH 3.4 Map6836.5UniSTS
Cytogenetic Map6q32UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000012256   ⟹   ENSRNOP00000012256
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6122,564,768 - 122,581,927 (-)Ensembl
Rnor_6.0 Ensembl6127,302,201 - 127,319,362 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl6128,996,616 - 129,001,614 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000091301
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl6128,996,616 - 129,001,614 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109592   ⟹   ENSRNOP00000092622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6122,564,767 - 122,581,143 (-)Ensembl
RefSeq Acc Id: NM_199119   ⟹   NP_954550
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86128,329,554 - 128,346,715 (-)NCBI
mRatBN7.26122,564,767 - 122,581,928 (-)NCBI
Rnor_6.06127,302,201 - 127,319,362 (-)NCBI
Rnor_5.06136,522,732 - 136,539,906 (-)NCBI
RGSC_v3.46127,699,436 - 127,716,597 (-)RGD
Celera6120,045,460 - 120,062,621 (-)RGD
Sequence:
RefSeq Acc Id: XM_006240483   ⟹   XP_006240545
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86128,329,554 - 128,346,754 (-)NCBI
mRatBN7.26122,564,767 - 122,581,931 (-)NCBI
Rnor_6.06127,302,201 - 127,319,310 (-)NCBI
Rnor_5.06136,522,732 - 136,539,906 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006240484   ⟹   XP_006240546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86128,329,554 - 128,346,718 (-)NCBI
mRatBN7.26122,564,767 - 122,581,931 (-)NCBI
Rnor_6.06127,302,201 - 127,319,382 (-)NCBI
Rnor_5.06136,522,732 - 136,539,906 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063262243   ⟹   XP_063118313
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86128,329,554 - 128,346,732 (-)NCBI
RefSeq Acc Id: XM_063262244   ⟹   XP_063118314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86128,329,554 - 128,346,718 (-)NCBI
RefSeq Acc Id: XM_063262245   ⟹   XP_063118315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86128,329,554 - 128,346,718 (-)NCBI
RefSeq Acc Id: XM_063262246   ⟹   XP_063118316
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86128,332,595 - 128,346,818 (-)NCBI
RefSeq Acc Id: NP_954550   ⟸   NM_199119
- UniProtKB: Q6VEU8 (UniProtKB/TrEMBL),   A6JEM9 (UniProtKB/TrEMBL),   A0A8I6AFW4 (UniProtKB/TrEMBL),   F7ETB4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240546   ⟸   XM_006240484
- Peptide Label: isoform X1
- UniProtKB: Q6VEU8 (UniProtKB/TrEMBL),   A6JEM9 (UniProtKB/TrEMBL),   A0A8I6AFW4 (UniProtKB/TrEMBL),   F7ETB4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240545   ⟸   XM_006240483
- Peptide Label: isoform X1
- UniProtKB: Q6VEU8 (UniProtKB/TrEMBL),   A6JEM9 (UniProtKB/TrEMBL),   A0A8I6AFW4 (UniProtKB/TrEMBL),   F7ETB4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012256   ⟸   ENSRNOT00000012256
Ensembl Acc Id: ENSRNOP00000092622   ⟸   ENSRNOT00000109592
Name Modeler Protein Id AA Range Protein Structure
AF-Q6VEU8-F1-model_v2 AlphaFold Q6VEU8 1-851 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13694793
Promoter ID:EPDNEW_R5317
Type:initiation region
Name:Ddx24_1
Description:DEAD-box helicase 24
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06127,319,368 - 127,319,428EPDNEW


1 to 35 of 35 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-36414 BioCyc
Ensembl Genes ENSRNOG00000009166 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000060974 Ensembl
Ensembl Transcript ENSRNOT00000012256 ENTREZGENE
  ENSRNOT00000012256.4 UniProtKB/TrEMBL
  ENSRNOT00000109592.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7442976 IMAGE-MGC_LOAD
InterPro DEAD-like_N UniProtKB/TrEMBL
  DNA/RNA_helicase_C UniProtKB/TrEMBL
  DNA/RNA_helicase_DEAD/DEAH_N UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  RNA-helicase_DEAD-box_CS UniProtKB/TrEMBL
  RNA_helicase_DEAD_Q_motif UniProtKB/TrEMBL
KEGG Report rno:373065 UniProtKB/TrEMBL
MGC_CLONE MGC:114231 IMAGE-MGC_LOAD
NCBI Gene 373065 ENTREZGENE
PANTHER RNA HELICASE UniProtKB/TrEMBL
Pfam DEAD UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
PhenoGen Ddx24 PhenoGen
PROSITE DEAD_ATP_HELICASE UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  Q_MOTIF UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009166 RatGTEx
  ENSRNOG00000060974 RatGTEx
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8I6AFW4 ENTREZGENE, UniProtKB/TrEMBL
  A6JEM9 ENTREZGENE
  F7ETB4 ENTREZGENE, UniProtKB/TrEMBL
  Q6VEU8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A6JEM9 UniProtKB/TrEMBL
1 to 35 of 35 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Ddx24  DEAD-box helicase 24  LOC100909476  ATP-dependent RNA helicase DDX24-like  Data merged from RGD:6503178 737654 PROVISIONAL
2016-01-13 Ddx24  DEAD-box helicase 24  Ddx24  DEAD (Asp-Glu-Ala-Asp) box helicase 24  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-01 Ddx24  DEAD (Asp-Glu-Ala-Asp) box helicase 24  Ddx24  DEAD (Asp-Glu-Ala-Asp) box polypeptide 24  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100909476  ATP-dependent RNA helicase DDX24-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-07-08 Ddx24  DEAD (Asp-Glu-Ala-Asp) box polypeptide 24      Symbol and Name status set to approved 1299863 APPROVED