Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Parkinson's disease | | ISO | DEFA4 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:25475535 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Parkinson's disease | | ISO | DEFA4 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:25475535 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | NCBI rat LocusLink and RefSeq merged data October 15, 2003 | NCBI rat LocusLink and RefSeq merged data October 15, 2003 |
3. | GOA pipeline | RGD automated data pipeline |
4. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
5. | Rat neutrophil defensins. Precursor structures and expression during neutrophilic myelopoiesis. | Yount NY, etal., J Immunol 1995 Nov 1;155(9):4476-84. |
Np4 (Rattus norvegicus - Norway rat) |
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DEFA4 (Homo sapiens - human) |
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Defa31 (Mus musculus - house mouse) |
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DEFA4 (Pan paniscus - bonobo/pygmy chimpanzee) |
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DEFA4 (Chlorocebus sabaeus - green monkey) |
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Variants in Np4
19 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
D16Wox27 |
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D16Wox28 |
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PMC96815P3 |
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PMC96815P4 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 23 | 18 | 13 | 18 | |||||||||
Low | 1 | 7 | 11 | 7 | 6 | 7 | 1 | 2 | 13 | 17 | 1 | ||
Below cutoff | 1 | 12 | 7 | 5 | 5 | 5 | 6 | 24 | 11 | 11 | 5 | 5 |
RefSeq Transcripts | NM_173299 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006253366 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC114391 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
CH473970 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000016 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
U16684 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
U50355 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000029297 ⟹ ENSRNOP00000037267 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000035128 ⟹ ENSRNOP00000036962 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000088257 ⟹ ENSRNOP00000072461 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_173299 ⟹ NP_775421 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006253366 ⟹ XP_006253428 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_775421 | (Get FASTA) | NCBI Sequence Viewer |
XP_006253428 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAA91972 | (Get FASTA) | NCBI Sequence Viewer |
AAC99552 | (Get FASTA) | NCBI Sequence Viewer | |
EDM08973 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000036962 | ||
ENSRNOP00000036962.3 | |||
GenBank Protein | Q62714 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_775421 ⟸ NM_173299 |
- Peptide Label: | precursor |
- UniProtKB: | Q62714 (UniProtKB/Swiss-Prot), A6IW99 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006253428 ⟸ XM_006253366 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8L2QLB0 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000037267 ⟸ ENSRNOT00000029297 |
RefSeq Acc Id: | ENSRNOP00000036962 ⟸ ENSRNOT00000035128 |
RefSeq Acc Id: | ENSRNOP00000072461 ⟸ ENSRNOT00000088257 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q62714-F1-model_v2 | AlphaFold | Q62714 | 1-93 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13700208 | ||||||||
Promoter ID: | EPDNEW_R10732 | ||||||||
Type: | single initiation site | ||||||||
Name: | Np4_1 | ||||||||
Description: | defensin NP-4 precursor | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:727857 | AgrOrtholog |
BioCyc Gene | G2FUF-10828 | BioCyc |
Ensembl Genes | ENSRNOG00000028707 | Ensembl |
ENSRNOG00000069755 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL | |
Ensembl Transcript | ENSRNOT00000035128.5 | UniProtKB/TrEMBL |
InterPro | Alpha-defensin | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Alpha-defensin_pro | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Defensin_beta/alpha | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Defensin_propep | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | rno:286958 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
NCBI Gene | 286958 | ENTREZGENE |
PANTHER | DEFENSIN ALPHA 10-RELATED | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PTHR11876 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | Defensin_1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Defensin_propep | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Np4 | PhenoGen |
PIRSF | Alpha-defensin | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PROSITE | DEFENSIN | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000028707 | RatGTEx |
ENSRNOG00000069755 | RatGTEx | |
SMART | Defensin_propep | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
DEFSN | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Superfamily-SCOP | Defensin-like | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A0A8L2QLB0 | ENTREZGENE, UniProtKB/TrEMBL |
A6IW99 | ENTREZGENE, UniProtKB/TrEMBL | |
DEF4_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2005-07-08 | Np4 | defensin NP-4 precursor | Symbol and Name status set to approved | 1299863 | APPROVED |