LINC00964 (long intergenic non-protein coding RNA 964) - Rat Genome Database

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Gene: LINC00964 (long intergenic non-protein coding RNA 964) Homo sapiens
Analyze
Symbol: LINC00964
Name: long intergenic non-protein coding RNA 964
RGD ID: 7246439
HGNC Page HGNC
Description: INTERACTS WITH benzo[a]pyrene; cisplatin; cyclosporin A
Type: ncrna
RefSeq Status: VALIDATED
Also known as: RP11-6D1.6
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl8124,823,702 - 124,962,531 (+)EnsemblGRCh38hg38GRCh38
GRCh388124,942,008 - 124,951,095 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh378125,954,250 - 125,963,337 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera8122,142,610 - 122,151,694 (+)NCBI
Cytogenetic Map8q24.13NCBI
HuRef8121,277,710 - 121,286,794 (+)NCBIHuRef
CHM1_18125,994,524 - 126,003,611 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14702039   PMID:16344560   PMID:16751776  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:646
Count of miRNA genes:442
Interacting mature miRNAs:463
Transcripts:ENST00000504665, ENST00000510897, ENST00000525292, ENST00000528090, ENST00000529135, ENST00000529478, ENST00000530549, ENST00000532713, ENST00000533286
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 320 1
Low 74 164 47 113 27 1 1269 72 65 63 441 309 114 9 673 1
Below cutoff 1778 1801 1471 387 781 340 2433 1764 3397 298 492 1121 54 994 1690 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000504665
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,944,179 - 124,951,095 (+)Ensembl
RefSeq Acc Id: ENST00000510897
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,055 - 124,951,099 (+)Ensembl
RefSeq Acc Id: ENST00000525292
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,848,620 - 124,850,696 (+)Ensembl
RefSeq Acc Id: ENST00000528090
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,848,766 - 124,944,612 (+)Ensembl
RefSeq Acc Id: ENST00000529135
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,940,074 - 124,954,859 (+)Ensembl
RefSeq Acc Id: ENST00000529478
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,940,272 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000530549
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,940,294 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000532713
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,940,528 - 124,951,095 (+)Ensembl
RefSeq Acc Id: ENST00000533286
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,941,965 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000653724
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,938,325 - 124,954,854 (+)Ensembl
RefSeq Acc Id: ENST00000653797
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,205 - 124,951,095 (+)Ensembl
RefSeq Acc Id: ENST00000654275
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,008 - 124,954,853 (+)Ensembl
RefSeq Acc Id: ENST00000654344
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,503 - 124,951,094 (+)Ensembl
RefSeq Acc Id: ENST00000654805
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,848,671 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000655319
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,941,980 - 124,951,097 (+)Ensembl
RefSeq Acc Id: ENST00000655637
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,848,620 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000655947
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,943,912 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000656062
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,940,313 - 124,951,097 (+)Ensembl
RefSeq Acc Id: ENST00000656094
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,025 - 124,962,531 (+)Ensembl
RefSeq Acc Id: ENST00000656280
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,940,325 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000656339
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,941,946 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000656467
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,941,990 - 124,951,095 (+)Ensembl
RefSeq Acc Id: ENST00000656616
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,941,791 - 124,951,514 (+)Ensembl
RefSeq Acc Id: ENST00000656869
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,940,523 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000657296
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,849,044 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000657463
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,823,702 - 124,951,095 (+)Ensembl
RefSeq Acc Id: ENST00000657718
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,044 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000657752
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,847,714 - 124,910,326 (+)Ensembl
RefSeq Acc Id: ENST00000657807
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,788 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000658039
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,937,500 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000658171
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,941,946 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000658422
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,941,908 - 124,954,855 (+)Ensembl
RefSeq Acc Id: ENST00000659472
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,068 - 124,951,095 (+)Ensembl
RefSeq Acc Id: ENST00000659706
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,940,330 - 124,954,854 (+)Ensembl
RefSeq Acc Id: ENST00000660004
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,008 - 124,951,097 (+)Ensembl
RefSeq Acc Id: ENST00000660300
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,848,742 - 124,951,173 (+)Ensembl
RefSeq Acc Id: ENST00000660364
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,014 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000660517
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,941,980 - 124,951,097 (+)Ensembl
RefSeq Acc Id: ENST00000661165
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,848,598 - 124,951,176 (+)Ensembl
RefSeq Acc Id: ENST00000661407
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,934 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000661433
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,943,355 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000661949
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,944,141 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000662253
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,940,508 - 124,951,093 (+)Ensembl
RefSeq Acc Id: ENST00000662376
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,015 - 124,951,097 (+)Ensembl
RefSeq Acc Id: ENST00000662419
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,943,204 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000662674
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,941,976 - 124,954,851 (+)Ensembl
RefSeq Acc Id: ENST00000663062
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,008 - 124,954,854 (+)Ensembl
RefSeq Acc Id: ENST00000663141
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,941,945 - 124,954,859 (+)Ensembl
RefSeq Acc Id: ENST00000663195
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,847,701 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000663231
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,014 - 124,954,855 (+)Ensembl
RefSeq Acc Id: ENST00000663450
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,943,183 - 124,951,094 (+)Ensembl
RefSeq Acc Id: ENST00000663475
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,626 - 124,951,095 (+)Ensembl
RefSeq Acc Id: ENST00000663642
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,278 - 124,951,095 (+)Ensembl
RefSeq Acc Id: ENST00000663765
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,023 - 124,951,096 (+)Ensembl
RefSeq Acc Id: ENST00000663920
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,941,960 - 124,951,175 (+)Ensembl
RefSeq Acc Id: ENST00000663922
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,008 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000663940
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,848,735 - 124,951,173 (+)Ensembl
RefSeq Acc Id: ENST00000663965
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,848,645 - 124,951,176 (+)Ensembl
RefSeq Acc Id: ENST00000664110
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,503 - 124,951,097 (+)Ensembl
RefSeq Acc Id: ENST00000664218
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,847,889 - 124,850,692 (+)Ensembl
RefSeq Acc Id: ENST00000664707
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,941,872 - 124,951,097 (+)Ensembl
RefSeq Acc Id: ENST00000664851
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,982 - 124,951,094 (+)Ensembl
RefSeq Acc Id: ENST00000665263
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,044 - 124,951,093 (+)Ensembl
RefSeq Acc Id: ENST00000665293
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,008 - 124,951,095 (+)Ensembl
RefSeq Acc Id: ENST00000665389
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,941,990 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000665494
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,068 - 124,954,852 (+)Ensembl
RefSeq Acc Id: ENST00000666477
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,847,680 - 124,869,335 (+)Ensembl
RefSeq Acc Id: ENST00000666508
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,838,980 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000666745
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,940,369 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000667269
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,868,012 - 124,951,097 (+)Ensembl
RefSeq Acc Id: ENST00000667605
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,008 - 124,951,095 (+)Ensembl
RefSeq Acc Id: ENST00000668837
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,941,364 - 124,954,851 (+)Ensembl
RefSeq Acc Id: ENST00000669297
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,847,680 - 124,850,696 (+)Ensembl
RefSeq Acc Id: ENST00000669524
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,941,994 - 124,951,093 (+)Ensembl
RefSeq Acc Id: ENST00000670035
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,035 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000670165
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,173 - 124,951,094 (+)Ensembl
RefSeq Acc Id: ENST00000670200
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,941,942 - 124,951,517 (+)Ensembl
RefSeq Acc Id: ENST00000670322
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,933 - 124,954,853 (+)Ensembl
RefSeq Acc Id: ENST00000670566
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,941,938 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000670706
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,008 - 124,951,097 (+)Ensembl
RefSeq Acc Id: ENST00000670950
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,025 - 124,951,096 (+)Ensembl
RefSeq Acc Id: ENST00000671263
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,941,985 - 124,951,177 (+)Ensembl
RefSeq Acc Id: ENST00000671628
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8124,942,850 - 124,951,095 (+)Ensembl
RefSeq Acc Id: NR_027321
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388124,942,008 - 124,951,095 (+)NCBI
GRCh378125,954,250 - 125,963,337 (+)NCBI
HuRef8121,277,710 - 121,286,794 (+)NCBI
CHM1_18125,994,524 - 126,003,611 (+)NCBI
Sequence:

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 8q24.13-24.21(chr8:122454392-128513076)x3 copy number gain See cases [RCV000133620] Chr8:122454392..128513076 [GRCh38]
Chr8:123466631..129525322 [GRCh37]
Chr8:123535812..129594504 [NCBI36]
Chr8:8q24.13-24.21
pathogenic
GRCh38/hg38 8q22.1-24.3(chr8:94682154-145068656)x3 copy number gain See cases [RCV000134353] Chr8:94682154..145068656 [GRCh38]
Chr8:95694382..146294042 [GRCh37]
Chr8:95763558..146264846 [NCBI36]
Chr8:8q22.1-24.3
pathogenic
GRCh38/hg38 8q24.13(chr8:124895891-125399814)x3 copy number gain See cases [RCV000134345] Chr8:124895891..125399814 [GRCh38]
Chr8:125908133..126412056 [GRCh37]
Chr8:125977314..126481238 [NCBI36]
Chr8:8q24.13
uncertain significance
GRCh38/hg38 8q21.3-24.23(chr8:86300584-137022587)x3 copy number gain See cases [RCV000135621] Chr8:86300584..137022587 [GRCh38]
Chr8:87312813..138034830 [GRCh37]
Chr8:87381929..138104012 [NCBI36]
Chr8:8q21.3-24.23
pathogenic|likely pathogenic
GRCh38/hg38 8q24.13-24.3(chr8:124498498-145068712)x3 copy number gain See cases [RCV000137346] Chr8:124498498..145068712 [GRCh38]
Chr8:125510739..146294098 [GRCh37]
Chr8:125579920..146264902 [NCBI36]
Chr8:8q24.13-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241605-145054781)x3 copy number gain See cases [RCV000138643] Chr8:241605..145054781 [GRCh38]
Chr8:191605..146280167 [GRCh37]
Chr8:181605..146250971 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q21.3-24.3(chr8:87931152-145068712)x3 copy number gain See cases [RCV000138551] Chr8:87931152..145068712 [GRCh38]
Chr8:88943380..146294098 [GRCh37]
Chr8:89012496..146264902 [NCBI36]
Chr8:8q21.3-24.3
pathogenic
GRCh38/hg38 8q21.13-24.3(chr8:77480050-145068712)x3 copy number gain See cases [RCV000139036] Chr8:77480050..145068712 [GRCh38]
Chr8:78392286..146294098 [GRCh37]
Chr8:78554841..146264902 [NCBI36]
Chr8:8q21.13-24.3
pathogenic
GRCh38/hg38 8q22.1-24.3(chr8:97382873-145070385)x3 copy number gain See cases [RCV000140447] Chr8:97382873..145070385 [GRCh38]
Chr8:98395101..146295771 [GRCh37]
Chr8:98464277..146266575 [NCBI36]
Chr8:8q22.1-24.3
pathogenic
GRCh38/hg38 8q11.1-24.3(chr8:46031340-139285494)x3 copy number gain See cases [RCV000139539] Chr8:46031340..139285494 [GRCh38]
Chr8:46942962..140297737 [GRCh37]
Chr8:47062127..140366919 [NCBI36]
Chr8:8q11.1-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:208048-145070385)x3 copy number gain See cases [RCV000141808] Chr8:208048..145070385 [GRCh38]
Chr8:158048..146295771 [GRCh37]
Chr8:148048..146266575 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q22.3-24.3(chr8:100867343-145070385)x3 copy number gain See cases [RCV000141694] Chr8:100867343..145070385 [GRCh38]
Chr8:101879571..146295771 [GRCh37]
Chr8:101948747..146266575 [NCBI36]
Chr8:8q22.3-24.3
pathogenic
GRCh38/hg38 8p21.3-q24.3(chr8:21291522-145070385)x3 copy number gain See cases [RCV000142021] Chr8:21291522..145070385 [GRCh38]
Chr8:21149033..146295771 [GRCh37]
Chr8:21193313..146266575 [NCBI36]
Chr8:8p21.3-q24.3
pathogenic
GRCh38/hg38 8q22.3-24.3(chr8:103306336-145068712)x3 copy number gain See cases [RCV000142810] Chr8:103306336..145068712 [GRCh38]
Chr8:104318564..146294098 [GRCh37]
Chr8:104387740..146264902 [NCBI36]
Chr8:8q22.3-24.3
pathogenic|likely pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:226452-145068712)x3 copy number gain See cases [RCV000142858] Chr8:226452..145068712 [GRCh38]
Chr8:176452..146294098 [GRCh37]
Chr8:166452..146264902 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q21.13-24.3(chr8:78614077-145054634)x3 copy number gain See cases [RCV000142597] Chr8:78614077..145054634 [GRCh38]
Chr8:79526312..146280020 [GRCh37]
Chr8:79688867..146250824 [NCBI36]
Chr8:8q21.13-24.3
pathogenic
GRCh38/hg38 8q21.2-24.3(chr8:85765999-145070385)x3 copy number gain See cases [RCV000143659] Chr8:85765999..145070385 [GRCh38]
Chr8:86778228..146295771 [GRCh37]
Chr8:86863079..146266575 [NCBI36]
Chr8:8q21.2-24.3
pathogenic
GRCh38/hg38 8q24.13-24.3(chr8:124514090-145054634)x3 copy number gain See cases [RCV000148117] Chr8:124514090..145054634 [GRCh38]
Chr8:125526331..146280020 [GRCh37]
Chr8:125595512..146250824 [NCBI36]
Chr8:8q24.13-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000148092] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q23.3-24.3(chr8:113580402-145054634)x3 copy number gain See cases [RCV000050638] Chr8:113580402..145054634 [GRCh38]
Chr8:114592631..146280020 [GRCh37]
Chr8:114661807..146250824 [NCBI36]
Chr8:8q23.3-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145049449)x3 copy number gain See cases [RCV000051206] Chr8:241530..145049449 [GRCh38]
Chr8:191530..146274835 [GRCh37]
Chr8:181530..146245639 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q24.13(chr8:124125245-125337217)x3 copy number gain See cases [RCV000050762] Chr8:124125245..125337217 [GRCh38]
Chr8:125137486..126349459 [GRCh37]
Chr8:125206667..126418641 [NCBI36]
Chr8:8q24.13
pathogenic
GRCh38/hg38 8q22.1-24.3(chr8:95606052-145054775)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053677]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053677]|See cases [RCV000053677] Chr8:95606052..145054775 [GRCh38]
Chr8:96618280..146280161 [GRCh37]
Chr8:96687456..146250965 [NCBI36]
Chr8:8q22.1-24.3
pathogenic
GRCh38/hg38 8q24.13-24.3(chr8:124514090-145054634)x3 copy number gain See cases [RCV000053678] Chr8:124514090..145054634 [GRCh38]
Chr8:125526331..146280020 [GRCh37]
Chr8:125595512..146250824 [NCBI36]
Chr8:8q24.13-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000053602] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:244417-145054775)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|See cases [RCV000053604] Chr8:244417..145054775 [GRCh38]
Chr8:194417..146280161 [GRCh37]
Chr8:184417..146250965 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q23.3-24.21(chr8:113288454-126716087)x1 copy number loss See cases [RCV000054301] Chr8:113288454..126716087 [GRCh38]
Chr8:114300683..127728332 [GRCh37]
Chr8:114369859..127797514 [NCBI36]
Chr8:8q23.3-24.21
pathogenic

Additional Information

Database Acc Id Source(s)
COSMIC LINC00964 COSMIC
Ensembl Genes ENSG00000249816 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000510897 ENTREZGENE
GTEx ENSG00000249816 GTEx
HGNC ID HGNC:27226 ENTREZGENE
Human Proteome Map LINC00964 Human Proteome Map
NCBI Gene LINC00964 ENTREZGENE
RNAcentral URS000075AC1C RNACentral